mRNA_P-littoralis_Contig911.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig911.8.1
Unique NamemRNA_P-littoralis_Contig911.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.580e-14
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 3 
Query:    3 RCNRMPVETFEKLVELLRPSLERNAHMTCVRTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVA 197
            R  RM   +F+KL ELLRP LERN +   +RT SG + V IR+AVA+RM AG SYID+ALLFG+A
Sbjct:   86 RMYRMEEHSFDKLAELLRPILERNDYSARLRTSSGAVPVKIRLAVALRMFAGASYIDVALLFGIA 150
[Close]
BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.020e-13
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 3 
Query:    3 RCNRMPVETFEKLVELLRPSLERNAHMTCVRTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIP 203
            R  RMP   FEKL ELL P L  N H   +RT +G ISV IR+AVA+R+LAG SY+D+A++FG+ +P
Sbjct:   85 RMYRMPRHAFEKLAELLAPLLTVNKHFAELRTLNGAISVQIRLAVALRILAGASYLDVAVMFGLGLP 151
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BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5K347_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K347_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.510e-13
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 3 
Query:   15 MPVETFEKLVELLRPSLERNAHMTCVRTK-SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIP 203
            M   TF+KLVELLRPSL  NA    +R+  +G I+V +RVAVA+R+LAG SY D+AL+FG+++P
Sbjct:    1 MEKATFDKLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGASYWDVALMFGLSVP 64
[Close]
BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 8.710e-13
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 3 
Query:    3 RCNRMPVETFEKLVELLRPSLERNAHMTCVRTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVA 197
            R  RM   +F KL ELLRP LE N      RT+SG + V IR+AVA+RMLAG SY+D+A+LFG+A
Sbjct:   87 RMYRMEEHSFNKLAELLRPFLESNDFYARKRTRSGAVPVKIRLAVALRMLAGASYLDVAVLFGIA 151
[Close]
BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5JMK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.490e-12
Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 3 
Query:   27 TFEKLVELLRPSLERNAHMTCVRT-KSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIP 203
            +F KLVELLRPSLE NA    +R+ ++G I+V +RVAVA+R+LAG SY D+ L+FG+++P
Sbjct:    5 SFHKLVELLRPSLEVNAFFGALRSPRNGAIAVEVRVAVALRILAGASYWDVTLMFGLSVP 64
[Close]
BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5KJ44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ44_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.180e-11
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:    3 RCNRMPVETFEKLVELLRPSLERNAHMTCVRTK-SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIP 203
            R  RM   +F KLVELLRPSL  NA    +R+  +G I+V +RVAVA+R+LAG SY D+AL+FG+++P
Sbjct:  115 RSYRMEKASFYKLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGTSYWDVALMFGLSVP 182
[Close]
BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5KBP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.390e-11
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 3 
Query:    3 RCNRMPVETFEKLVELLRPSLERNAHMTCVRTKS-GVISVHIRVAVAIRMLAGGSYIDIALLFGVA 197
            R  RM   +F KLVELLRPSLE NA    +R+ + G I+V +RVA A+R+LAGGSY D+AL+FG++
Sbjct:  129 RSYRMEKGSFHKLVELLRPSLEVNAFFGALRSPTNGAIAVEVRVAAALRILAGGSYWDVALMFGLS 194
[Close]
BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5KUP3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP3_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.940e-11
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 3 
Query:    3 RCNRMPVETFEKLVELLRPSLERNAHMTCVRTK-SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIP 203
            R  RM   +F KLVELLRPSL  NA    +R+  +G I+V +RVAVA+R+LAG  Y D+AL+FG+++P
Sbjct:   42 RSYRMEKASFHKLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGARYWDVALMFGLSVP 109
[Close]
BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5JMM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 3 
Query:    3 RCNRMPVETFEKLVELLRPSLERNAHMTCVRTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVA 197
            R  RM   +F KL +LLRP LE N      RT SG + V I +AVA+RMLAG SY+D+A+LFG+A
Sbjct:   87 RMYRMEEHSFNKLAQLLRPFLESNDFYARKRTGSGAVPVKISLAVALRMLAGASYLDVAVLFGIA 151
[Close]
BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Match: A0A6H5JT08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT08_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.980e-11
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:    3 RCNRMPVETFEKLVELLRPSLERNAHMTCVRTK-SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIP 203
            R  RM   +F +LVELLRPSL  NA    +R+  +G I+V +RVAVA+R+LAG SY D+AL+FG+++P
Sbjct:  268 RSYRMVKASFHRLVELLRPSLAVNAFFGALRSPINGAIAVEVRVAVALRILAGASYWDVALMFGLSVP 335
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig911.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JDE6_9PHAE1.580e-1460.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L386_9PHAE1.020e-1355.22DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K347_9PHAE3.510e-1356.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHK3_9PHAE8.710e-1356.92DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMK6_9PHAE6.490e-1256.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ44_9PHAE1.180e-1154.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBP1_9PHAE1.390e-1156.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP3_9PHAE1.940e-1152.94DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMM2_9PHAE2.400e-1153.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT08_9PHAE2.980e-1152.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig911contigP-littoralis_Contig911:54621..58411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size203
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791822.4797719-CDS-P-littoralis_Contig911:54620..547361680791822.4797719-CDS-P-littoralis_Contig911:54620..54736Pylaiella littoralis U1_48CDSP-littoralis_Contig911 54621..54736 -
1680791822.4901288-CDS-P-littoralis_Contig911:58324..583971680791822.4901288-CDS-P-littoralis_Contig911:58324..58397Pylaiella littoralis U1_48CDSP-littoralis_Contig911 58325..58397 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791822.5037878-UTR-P-littoralis_Contig911:58397..584111680791822.5037878-UTR-P-littoralis_Contig911:58397..58411Pylaiella littoralis U1_48UTRP-littoralis_Contig911 58398..58411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig911.8.1prot_P-littoralis_Contig911.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig911 54621..58397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig911.8.1

>prot_P-littoralis_Contig911.8.1 ID=prot_P-littoralis_Contig911.8.1|Name=mRNA_P-littoralis_Contig911.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
MPVETFEKLVELLRPSLERNAHMTCVRTKSGVISVHIRVAVAIRMLAGGS
YIDIALLFGVAIP
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mRNA from alignment at P-littoralis_Contig911:54621..58411-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig911.8.1 ID=mRNA_P-littoralis_Contig911.8.1|Name=mRNA_P-littoralis_Contig911.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3791bp|location=Sequence derived from alignment at P-littoralis_Contig911:54621..58411- (Pylaiella littoralis U1_48)
CGCGCTGCAACAGGATGCCGGTCGAGACTTTCGAGAAGCTTGTCGAGCTG
CTTCGCCCTTCCTTGGAAAGGAACGCACACATGACATGTGAGAGAGTCAC
TGCTGGTTTTTTGGTTGCACATTTAATTTTCCCTCAGGGACAACAGCAGC
AGTAGTGCACACATACTTCGAAGTACACGGTCATACGCTGTACTGCAGCG
CAGCCAAACAGCGGCACCAGTCGAACATCAAAACGCACGCGTACGCACAT
ATTTAGCATCATCAGCTATACTTGAAAGCACAGCGCAACAGGACATACTT
CACAAACTTTTTTCCTGGTTGTATATATGATACGAAGATTTTCGTTTTGT
CACTGCTGTACACTCTGTACACGGGCTGTCTCCTCCTACATGTGGTACAC
ACCGATACTTCGTGTGTGAAAACCACCACCTCTTCAGTTGTTTTTTGTGC
GCGTGAGGATGACGAACACAGCAGTAGCAGCAGCAGAAAGGCGTAAACAC
ATACTTCGAGTATACTCCGGAGTATATCATACCAGCGGCAAAAATATAGA
AACACACGTACATCAAATCTTGACGTACTCGCACACAAGCTTTTTTATTC
ATTGCAAGGTACACGACATGTTTAGGGCGACATCATCACCAGCGTCGCAA
GGACGGCATGGAGACACCATCCTCGACAACATCTGATGATACGTGTGTGT
TTTTGTGTTTTTTCTTTTCCTGTCTTCTCCGATTACCGGGGCTACTTGTA
CGTTGCAGGCAGCACTCCAGCAACTATTAATAGCTGAGTCTGCAGCTACC
TACTGACTGCTTGTGAGCAGTACCAGGTGGTAGTGGTTATTAGTTACAAG
TGGGGCGGGAGGAGACTGAACACGATGCTGTAGTCAAATGAACGACGCTG
AAAGTACGTTTGATGTTGGTACTGCTGTGACTTCTGTAGTTCAGTGATGC
ACACCGCGTAGGAAGGTGTATCTTCTTCGGTCTTTCTTTTGTATTCCCTT
GTAGTTTTTTTCTGTGTTTCGGATCTTCCTAGGGCTCAGCACTTTTTGTG
ACCACGGGCTTAGATTTTGGCGATGAGCTAATGTGAGAATCAACAACAAC
AACACAAGCCACACAGGAGGAGGAGTTCCACGCAGCAGGCGTAGTGATAC
CACACCATGTACACGTCGCACAGAATTCGAACACCTCCCGACTTTTATTA
CGCGTACGCACATATTATTATTATTAGACAGTTTCGGTGGTTTCCATTTC
GGCCCCCCGAAATGGCTCGGAAGTTTGCTCGGAATTTTGCTCGGATTTTT
TGCCCGGATTTTTGCTTGATACAAAAAAAAGAGATTTTGCTCAGATTTTT
TGAGGCGGCGAGACTAAAATGACGTGTTCAGCAGGGACGCTGAGATTGGC
GTAGAGTTTCGCCGCGTTTCCCAAGAGACTCGCCGCGTTTCTTAACCACG
TCTACGATTATTGGATTTTCCACGATGTGGGGATGGGCAACGTAGTAGCG
TGCCCCCTCTCTGCACGACGCAAGGCGGCGCTTTTGTTTCAGTCACGCGG
CTGTGTTATCATGGCACGGCTACGATTGAAGGAGAGGATCGCACGCAAAA
ACAGTGCGGGACGGACCTACAGCAAAATCAGGAACGGGGTGACAAAAATA
TATTGCAAGACACAGCAGCGGTCAGGTCGAGTGCTGCTGCTGTAGACACC
GATGCGGACAACCAAATATCCCAATTCTGTTAAACAACGCGCAACATGTT
GACCCCACCAACATTCTTACGAACACTACCTGTGTGGAAACCGTAGGTGC
CTGGCCCCGAACCTCGGCCTACTCTCGCACTACAGCAGTAAGTACTTAAA
TCAAAGTCGAGCAGTATATCTATAGTCTACTCCGGTCGGATCCTTTTGGC
GGCAACATATCCTATACCTATCATCCACTACTAGTCACGCAACACTGTGT
GGAGCTTGTCGCTGTATAACAAGTTACCAGCGCTGTCGAGGTCCGGGTTT
GGAAGCCTTATAGGAGCATAACATACTCAACATATAGACACAGAGCACAA
GCATATACACATATCTTGGAGGTCTGCAGCAGTGCTGCTGTAGCTGCCAG
GTGACGACGTGTGTGTGTGAGAGAGAAGAGAGAGAGAGAGACATGAGAGA
GAGAGATCTCGAAAAAGTGGTTATCATAAAAAAAAACATGCAAAACAAAT
GAACCGCACAGCAGTAGAGTGTGCTGCGCTCAGTTTTCACGACTGCACAG
AGAGAGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGC
TACGCTGAAGGTGTGCACATCCAACACCCGCAAGCATGACCAGCATACGG
AACACAGCGGGGACAACGCACAGACACGCACACAGCCGTAGGTGTAAGCC
TCATGCCTGTATCTCCACGTCCGGCGTGTTGTCCCCTTCGACGCTGCTAG
CATCTGCGTCGATAGGCGTAAGGCTGCTACCATCCTCCCCCCCCAGCTGT
TCGGTCAAGCTCTATTTCATCCGGACCATCTCCTGAAAAGAGGCCGCTTC
ACCCACTTTTTCGTCTGAACCCTCGGTGGCGACCGAGGTATCACTAGGCC
AGCTTCCTGCGCCTTCTGGGACGGCTTCACGCTCCTTTGAGGACGAGACG
GCTGCGCCATCGGTGTGCTTGTGCTATGTTCCCGCTCAAAAATATGAGCC
AGGCGAACCGGAACGAGTGTGCTCTCCTTTGCTCATAAGAAACGAGATTA
TTTCACGATTTCTTCGGAGCAAACGAAAAATCCGAGGCATTTGGGTCCGC
CCAAAAAACCGTTTGCCGGCTAGTTTTTCCAAAATCCGAGCCAGAAAAAT
TCCGAGCCATTTCGGGGGGCCGAAAAAAAACCACCGAAACTGTGTATTTA
GCATCAGCCACACTTGGAAGCACAGCGCATCGCAACAGGACGTAGTCTAC
TCCACAAACTTTTTCCTTCCCTGGTCGTATATGATAACGAAGATTTGCGT
TTGTGACTGCTGTACACGGCCTGCTCTTCCTACAACATATGATACCGATA
CTTCGTGCTTGTTACATGATGAAAACCACCACCTCTGCAGTTTTTTTGTT
CCCGTGATAATGACGAACACAGCAGCAGCAGCAGCAGCAGAAAGGCGCAC
ACATATCAGCGGCAAAAATATCAGAAAAATATAGAAACACACGTATATCA
AATCTTGACGTACTCGCACACAAGAATGAGGTTTTTTTCTAGCACCGCAC
GAACAGCAGTACAAGGTACGAGCCACCACAGGAGGATTTATTTCCACTCA
GGCGTAGTGATACCATACCATGCACTCTTCGTACAGACATGCGAACACCT
CTCAACTTTTTCTCCCTGCTGGTATGCGTTGTGTGTGTTTCTCTTGCTGT
GTGTGTCCCCGTGTGATCTGCTGCTGTGGGGTCTGGAGGGTTCTTTATTT
TCTTGTGGGGGGCTCCCGAGGCGTTTCGTGACCTGCTCAAACACGCAAAT
GCGTTGTGCGTATGGGGTTCCCCGACGTTCCACATGCTTCCCTTTCTTTG
AATTTACCATGTGCTTACCTCGGCACACTTTCTAGCGCCTACAATGCTCG
TTGCTTCGAATATCGCGTAAAGCTGCTTTGCTGACCTCGATTCCTTCCTC
TTTCTATTGCGATGATGTCCTTCAGGTGTGCGCACTAAGAGCGGCGTTAT
CAGTGTTCACATACGTGTTGCTGTGGCTATCCGGATGCTTGCTGGCGGCT
CCTACATCGACATTGCGCTGCTCTTTGGCGTTGCAATCCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig911:54621..58411-

>mRNA_P-littoralis_Contig911.8.1 ID=mRNA_P-littoralis_Contig911.8.1|Name=mRNA_P-littoralis_Contig911.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig911:54621..58411- (Pylaiella littoralis U1_48)
ATGCCGGTCGAGACTTTCGAGAAGCTTGTCGAGCTGCTTCGCCCTTCCTT
GGAAAGGAACGCACACATGACATGTGTGCGCACTAAGAGCGGCGTTATCA
GTGTTCACATACGTGTTGCTGTGGCTATCCGGATGCTTGCTGGCGGCTCC
TACATCGACATTGCGCTGCTCTTTGGCGTTGCAATCCCG
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