prot_P-littoralis_Contig911.1.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig911.1.1
Unique Nameprot_P-littoralis_Contig911.1.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length215
Homology
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BLAST of mRNA_P-littoralis_Contig911.1.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 9.880e-56
Identity = 97/129 (75.19%), Postives = 110/129 (85.27%), Query Frame = 0 
Query:   74 GGELPAGAAADVPVFDLSDKAIEDMWMRVKKQLFSVGKGGVKPSHVRSLNTLIAAHTLVKVKINIPNADLEEVGLELAGKGGAAAATLGGGVEDESSSGVDISVVTVKPNQKTILFANTEFLTAQARGE 202
            GGE+   +AA VP FDL++K +E++WMRVKKQL SVGKGG+KPSHVRSLN+LIAAHTLVKVK+NIPNADLEEVGLELAGKGG A   LGGG  DE+S  V +SVVTV PNQK ILFANTEFL +QARGE
Sbjct:    4 GGEV---SAAAVPEFDLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGGLA---LGGGDGDEASPAVGVSVVTVNPNQKVILFANTEFLASQARGE 126
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BLAST of mRNA_P-littoralis_Contig911.1.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.590e-54
Identity = 101/151 (66.89%), Postives = 117/151 (77.48%), Query Frame = 0 
Query:   52 LRETLGGRARTRGFGFFGMGGEGGELPAGAAADVPVFDLSDKAIEDMWMRVKKQLFSVGKGGVKPSHVRSLNTLIAAHTLVKVKINIPNADLEEVGLELAGKGGAAAATLGGGVEDESSSGVDISVVTVKPNQKTILFANTEFLTAQARGE 202
            L   +GGRA  RG    GM   GGE+   + A VP FDL++K +E++WMRVKKQL SVGKGG+KPSHVRSLN+LIAAHTLVKVK+NIPNADLEEVGLEL GKGG  +   GGG  DE+S  V +SVVTV PNQK ILFANT+FL +QARGE
Sbjct:   60 LSREMGGRATRRGCLAVGMN-TGGEV---STATVPEFDLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGKGGLKS---GGGDGDEASRAVGVSVVTVNPNQKVILFANTDFLASQARGE 203
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig911.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K1_ECTSI9.880e-5675.19CRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JP08_9PHAE4.590e-5466.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 104..156
e-value: 9.6E-5
score: 22.5
IPR035920YhbY-like superfamilySUPERFAMILY75471YhbY-likecoord: 104..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig911contigP-littoralis_Contig911:10..2480 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig911.1.1mRNA_P-littoralis_Contig911.1.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig911 2..3788 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig911.1.1 ID=prot_P-littoralis_Contig911.1.1|Name=mRNA_P-littoralis_Contig911.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp
MVLPVEPAVGRGPSCCSSSYSHAALPRPHAVRGCTCGTCPAVTSAAAVAG
LLRETLGGRARTRGFGFFGMGGEGGELPAGAAADVPVFDLSDKAIEDMWM
RVKKQLFSVGKGGVKPSHVRSLNTLIAAHTLVKVKINIPNADLEEVGLEL
AGKGGAAAATLGGGVEDESSSGVDISVVTVKPNQKTILFANTEFLTAQAR
GEVFNNERPTAVPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001890RNA-binding_CRM
IPR035920YhbY-like_sf