mRNA_P-littoralis_Contig908.6.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig908.6.2
Unique NamemRNA_P-littoralis_Contig908.6.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: D7FKS5_ECTSI (WD repeat, SAM and U-box domain containing 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS5_ECTSI)

HSP 1 Score: 894 bits (2311), Expect = 4.220e-316
Identity = 483/610 (79.18%), Postives = 505/610 (82.79%), Query Frame = 1
Query:  334 MLNGPILVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDEDPREVPGERGQAEGRRWERYKEENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQLEVTEVSPTDTLVDTVDADGDAIMAEDKGGGDASRSRPPRPVD--SQGARSNGLAGDAHAGSAAGVKEGAATDQEEGGG--GQRNRGRATSTQSGKPSWS-KVEEELSVLRIGGM-MGADGVSSGGDG---------VDHRGRQDSSRSPLPHDNGAGGEDDASVLDTPLQEKHRGEGEGGVSDDEKELEGLEKSFEAGVKLAKGHRRLCLECFAPEGTPIQGSRFFVGRKGATLGRRQTNTIAFSHESGGNVMGIDASISGEHARIVYDEDGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGSEILIGTVRFSVTLETMVVEKELTPDNRNHFMALARDHGRRASPPLGANIEFSGHDRRVQGAGLS 2118
            MLNGP+LVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLL EGGEGLY++  DSD +G                     R KE NREYRFALV EQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGI+FDKEEKQFSLCDFGSAGGTFVRLASG  TPLYPSMMIMLGKHQLE+T   P D  V  VDADG +I AEDKGG DASRSRP RP D  S  ARS G AG         VKEGA TDQEE GG  GQR R R TS QS K S S KVEEELSVLRIGG   GADGVSS GDG         V+HR RQDSSRSPLPH+N AGGEDDASVLDTPLQ+KH GEGEGG S DEKELEGLE+SFEAG+KLA+GHRR+CLECFAPEGTPIQGSRFFVGR+GATLGRRQTNTIAFSHESGG VMGIDASISGEHARIVYDE+GDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNG+EILIGTVRFSVTLE+MVVEKELT DNRNHFM+LA+D  RR+SPP GA  +      RV  A  S
Sbjct:    1 MLNGPLLVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLAEGGEGLYVYRVDSDEEGXXXXXXXXXXXXXXXXXXXG-REKEGNREYRFALVTEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIIFDKEEKQFSLCDFGSAGGTFVRLASGVPTPLYPSMMIMLGKHQLEITNACPEDVDVKAVDADGASIAAEDKGGDDASRSRPSRPGDNASAAARSRGTAG---------VKEGATTDQEESGGRGGQRERARPTSAQSAKSSSSSKVEEELSVLRIGGAGTGADGVSSAGDGPAGGLLLDSVEHRVRQDSSRSPLPHENAAGGEDDASVLDTPLQDKH-GEGEGGASGDEKELEGLERSFEAGLKLARGHRRVCLECFAPEGTPIQGSRFFVGREGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEEGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGAEILIGTVRFSVTLESMVVEKELTVDNRNHFMSLAKDQDRRSSPPWGAGRQSGSRGGRVDQANRS 599          
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: A0A6H5KH40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH40_9PHAE)

HSP 1 Score: 609 bits (1571), Expect = 3.560e-206
Identity = 351/509 (68.96%), Postives = 372/509 (73.08%), Query Frame = 1
Query:  490 SPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDEDPREVPGERGQAEGRRWERYKEENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQLEVTEVSPTDTLVDTVDADGDAIMAEDKGGGDASRSRPPRPVD--SQGARSNGLAGDAHAGSA-------AGVKEGAATDQEEGGG--GQRNRGRATSTQSGKPSWSKVEEELSVLRIGGM-MGADGVSSGGDG---------VDHRGRQDSSRSPLPHDNGAGGEDDASVLDTPLQEKHRGEGEGGVSDDEKELEGLEKSFEAGVKLAKGHRRLCLECFAPEGTPIQGSRFFVGRKGATLGRRQTNTIAFSHESGGNVMGIDASISGEHARIVYDEDGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGSEILIGTVRF 1953
            S +TGQPMEQLSLVPNLNLRRLIKDLL EGGEGLY++  +SD +G  + P                R KE +REYRFALV EQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAML GADFMQFSDATVSRRHFGI+FDKEEKQFSLCDFGSAGGTFVRLASG  TPLYPSMMIMLGKHQLE+T   P D  V  VDADG +I AEDKGG +ASRSRP RP D  S  ARS G A               AGVKEGA TDQEE GG  GQR R R TS QS K S SKVEEELSVLRIGG   GA+GVSS GDG         ++HR RQDSSRSPLPH+N AGGEDDASVLDTPLQ+K                                   + L C +       GSRFFVGR+GATLGRRQTNTIAFSHESGG VMGIDASISGEHARIVYDE+GDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNG+EILIGTVR 
Sbjct:   15 SSQTGQPMEQLSLVPNLNLRRLIKDLLAEGGEGLYVYRVESDEEG--DGPXXXXXXXXXXXXXXXGREKEGDREYRFALVTEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLDGADFMQFSDATVSRRHFGIIFDKEEKQFSLCDFGSAGGTFVRLASGVPTPLYPSMMIMLGKHQLEITNACPEDVDVKAVDADGASIAAEDKGGDNASRSRPSRPGDIASAAARSRGTAXXXXXXXXXXXXXXXAGVKEGATTDQEESGGRGGQRERARPTSAQSAKSSSSKVEEELSVLRIGGTGTGAEGVSSAGDGPAGGLLLDSMEHRVRQDSSRSPLPHENAAGGEDDASVLDTPLQDK-----------------------------------VLLFCGS-------GSRFFVGREGATLGRRQTNTIAFSHESGGTVMGIDASISGEHARIVYDEEGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGAEILIGTVRI 479          
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: A0A835Z8M7_9STRA (WD repeat, SAM and U-box domain-containing 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M7_9STRA)

HSP 1 Score: 475 bits (1222), Expect = 4.520e-154
Identity = 290/579 (50.09%), Postives = 341/579 (58.89%), Query Frame = 1
Query:  334 MLNGPILVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDEDPREVPGERGQAEGRRWERYKEENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQLEVTEVS---------PTDTLVDTVDADGDAIMAEDKGGGDASRSRPPRPVDSQGARSNGLAGDAHAGSAAGVKEGAATDQEEGGGGQRNRGRATSTQSGKPSWSKVEEELSVLRIGGMMGADGVSSGGDGVDHRGRQDSSRSPLPHDNGAGGEDDASVLDTP---LQEKHRGEGEGGVSDDEKELEGLEKSF----EAGVKLAKGHRRLCLECFAPEGTPIQGSRFFVGRKGATLGRRQTNTIAFSHESGGNVMGIDASISGEHARIVYDEDGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGSEILIGTVRFSVTLETMVVEKEL-TPDNRNHFM 2019
            M+  P+LV+G  LRDEF+CPITRELMRDPVIAADGHTYDREAIEMWLR HDTSPK GQPM+ L LVPN NL+RLIKDL+ EGGEGLY+       +G D  P + P                    YRFALV E +L+LKCLGP +SDWN K+FRVTERGCVGGRK PA L GADFM FSDATVSR+HF + FDK +K F + D GSAGGTFVR+  G   PLYP +MIMLGKHQL VTE +         P  +  D +  D    MA D   G    SRP  PV                             Q  GG G R RG    T  G  +        +   +GG+  A                      L  +   GG DD SV DTP   +  + + +G     D     EG E+SF    E   KLA+GHR L LECFAPEGTPIQG ++ VGR GATLGR+Q+N+IAFSH + G +MGID+SISGEHAR+ Y    D L ++DGTP KPSTNGTWFRLS MH  S P+ L +G E+L+GTVRFS   E MVVE EL TP +   +M
Sbjct:    1 MITRPVLVKGHRLRDEFACPITRELMRDPVIAADGHTYDREAIEMWLRTHDTSPKAGQPMDHLFLVPNHNLKRLIKDLIYEGGEGLYVKE-----EGADCGP-DAP--------------------YRFALVPEHVLILKCLGPVESDWNGKTFRVTERGCVGGRKMPAELHGADFMHFSDATVSRKHFEVFFDKTDKCFKIRDEGSAGGTFVRVPYGVPKPLYPGLMIMLGKHQLLVTEPNRGDKQAPRLPPRSEPDVLPDDSGVDMAADSKDG----SRPSTPV----------------------------CQSMGGKGGRLRGE-DGTGGGHVA--------NATHMGGLDAA----------------------LAVEEAPGGADDDSVADTPSPAMAAESKDDGAAMAMD-----EGDERSFGAAYEVEAKLARGHRALHLECFAPEGTPIQGRQYAVGRDGATLGRKQSNSIAFSHMANGQLMGIDSSISGEHARVEYSAARDCLLVLDGTPAKPSTNGTWFRLSQMHARSAPHALRDGMELLVGTVRFSAAHEMMVVEVELFTPQDAAKYM 485          
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: D7FNJ7_ECTSI (Armadillo/beta-catenin repeat family protein / U-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNJ7_ECTSI)

HSP 1 Score: 498 bits (1283), Expect = 2.000e-151
Identity = 296/541 (54.71%), Postives = 335/541 (61.92%), Query Frame = 1
Query:  355 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDEDPREVPGERGQAEGRRWERYKE--ENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQLEVTEVSPTDTLVDTVDADGDAIMAEDKGGGDASRSRPPRPVDSQG--ARSNGLAGDAHAGSAAGVKEGAATDQEEGGGGQRNRGRATSTQSGKPSWSKVEEELSVLRIGGMMGADGVSSGGDGVDHRGRQDSSRSPLPHDNGAGGEDDASVLDTPLQEKHRGEGEGGVSDDEKELEGLEKSFEAGVKLAKGHRRLCLECFAPEGTPIQGSRFFVGRKGATLGRRQTNTIAFSHESGGNVMGIDASISGEHARIVYDEDGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGSEILIGTVRFSVTL 1965
            + G  LRD F+CPIT ELMRDPV+  DGHTYDREAIEMWLR + TSPKTG+P+E+L LVPNLNLRRLIKD L+EGGE LY+   D D   +D+   EV  + G      WE      E+RE RFALV EQILVLKCLG      N +SFRVTERGCVGGR QP  LAGA+F+Q SDATVS+RHFGI FDKE+K FSL D GSAGGTFVRL  G  T LYP M+I+LG+HQLEV +VS TD+    V+ D +     DKG    S S P  P +S    AR  G+A     GSAA V +G  TD     GG+R      S Q  K S SK  EE                                                             GEGG+SDDEKELE       AG K  + + R+CLECFAPEGTPIQG RFFVGR+GATLG R+TNTIAFS+ESGG VMGID  ISG HARIVYD+ G F HI DG   K S NGTW RLSG HTESRPYPLS+G+EILIGTV FSVTL
Sbjct: 1037 MHGFTLRDAFACPITGELMRDPVVVEDGHTYDREAIEMWLRKYGTSPKTGEPIERLLLVPNLNLRRLIKDFLIEGGEELYVGGRDGDGGDQDDGSGEVDRDEGDGGESGWEERSGTGEHRECRFALVTEQILVLKCLGSVYPGGNIESFRVTERGCVGGRNQPNTLAGAEFVQISDATVSKRHFGIAFDKEDKLFSLRDLGSAGGTFVRLELGVSTLLYPGMIILLGRHQLEVIDVSSTDSEAKAVEGDRNPFAVGDKGSNATSPSSPSAPGNSSSTAARRRGMACSI-VGSAAIVNKGPTTD-----GGEREPRHPISPQPAKSSSSKQHEE-------------------------------------------------------------GEGGISDDEKELE-------AGAKPGRRNPRVCLECFAPEGTPIQGKRFFVGREGATLGGRKTNTIAFSYESGGTVMGIDDFISGVHARIVYDDGGGFFHITDGNSFKSSKNGTWVRLSGKHTESRPYPLSHGTEILIGTVPFSVTL 1503          
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: A0A7R9UA93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA93_9STRA)

HSP 1 Score: 320 bits (820), Expect = 2.330e-94
Identity = 222/653 (34.00%), Postives = 304/653 (46.55%), Query Frame = 1
Query:  277 LGQSIRAAAERSGEGFGGSMLNGPILVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDEDPREVPGERGQAEGRRWERYKEENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQLEVTEVSPTDTLVDTVDADGDAIMAEDKGGGDASRSRPPRPVDSQGARSNGLAGDAHAGSAAGVKEGAATDQEEGGGGQRNRGRATSTQSGKPSWSKVEEELSVLRIGGMMGADGVSSGGDGVDHRGRQDSSRSPLPHDNGAGGEDDASVLDTPLQEKHRGEGEGGVSDDEKELEGLEKSFEAGVKLAKGHRRLCLECFAPEGTPIQGSRFFVGRKGATLGRRQTNTIAFSHESGGNV-MGIDASISGEHARIVYDEDGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGSEILIGTVRFSVTLETMVVEKELTPDNRNHFMALARDHGRRASPPLGANIEFSGHDRRVQGAGLSR*LPGLTFV*SPYVLAYKSRRG*PGGGVKGLLWPLCFR 2232
            LG+       R   G G       +LVRG  LRDE+ CPITREL+RDPV+AADGHTY+R AIE WL +H  SPKT + ME  +L PN+NL +LI+DL+ EGGEGLY+   D++S   D D   +PG                   Y+ AL+ +++L LKCLGP DS WN++SFRV   G +GGR+ P      D + F DATVSRRHF I+ ++ +  F + D GSAGGTF+R+      P++P +M M+GKHQ+   +++                                                                       Q  R  AT                    +G  MG  G           GR               G+D  +V   P +E             E+++  LE    A     +      LECFAPEGTP+QG  F V R+  +LGR+Q N ++FS      V +GID+S+SG H+RI YDE+ D L +MDG+ +KPSTNGTW RLS MHT S+ +PL  G E+LIGTVRF  +++ ++VEK +  D+    M  A++   R +            D+R Q     +  PG               +  P G  +GL  P  F+
Sbjct:   26 LGERPGEEGARPARGGGRMAATRAVLVRGRQLRDEYVCPITRELLRDPVMAADGHTYERVAIEKWLVSHRRSPKTQKVMESNTLFPNINLLKLIRDLVAEGGEGLYVLE-DTESMAEDSD---MPGG------------------YQNALLWQKVLTLKCLGPADSSWNNRSFRVFPHGVLGGRRTPTRQTDRDHIAFGDATVSRRHFEIIQNEADFLFYIRDLGSAGGTFLRVQEKEKIPVFPGLMFMVGKHQMIAKDMA-----------------------------------------------------------------------QHERDDAT-------------------HVGISMGCVG-----------GR---------------GDDQRTVSAEPAREA------------EEDINSLEPGDIADFHRMRTEHSCVLECFAPEGTPMQGKTFEVERRSVSLGRKQINDVSFSQLGDDGVCLGIDSSVSGIHSRIEYDEEEDALQLMDGSASKPSTNGTWVRLSKMHTRSKFFPLRPGVELLIGTVRFITSVDEVIVEKAIREDDA--LMKYAQEVAEREA------------DQRAQAKRTPKSRPG------------SKEQSRPRGDKEGLAKPFLFK 502          
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: A0A7S2NWM2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWM2_9STRA)

HSP 1 Score: 320 bits (821), Expect = 3.840e-94
Identity = 227/595 (38.15%), Postives = 304/595 (51.09%), Query Frame = 1
Query:  349 ILVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWL------RNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEG-GEGLYLHHAD-----------SDSDGRDEDPREVPGERGQAEGRRWE-----RYKEENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGAD--------FMQFSDATVSRRHFGIVFDKEEKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQL--EVTEVSPTDTLVDTVDADGDAIMAEDKGGGDASRSRPPRPVDSQGARSNGLAGDAH----------AGSAAGVKEGAATDQEEGGGGQRNRGRATSTQSGKPSWSKVEEELSVLRIGGMMGADGVSSGGDGVDHRGRQDSSRSPLPHDNGAGGEDDASV---LDTPLQEKHRGEGEGGVSDDEKELEGLEKSFEAGVKLAKGHRRLCLECFAPEGTPIQGSRFFVGRKGATLGRRQTNTIAFSHESGGNVMGIDASISGEHARIVYDEDGDFLHIMDGTPT-KPSTNGTWFRLSGMHTESRPYPLSNGSEILIGTVRFSVTLETMVVEKEL 1992
            I+   S LRDEF+CPITRE++ +PVIAADGHTYD+ AIE W+      R   TSPKTG+ +E L L+PN NL+RL++D+LVEG G+ LY   AD           SD D +  +   V            +          N +   ALV E++L LKCLGP +S+WN++SF+VTE GC+GGR++P + A           F+QF++ATVSRRHF I +DK  ++F + D GSAGGTFVR+  G    + P  MIM+GKHQL  E  E+S          A   A   E  G GDA        V     RS+   G             + SA   +   A DQEE          A             E + ++L+   M  A                       P + G  G+D  SV   +D           E  +   +  L     ++ +      G   L L CFAPEGTPIQ   + + + GATLGR+Q+NTI+FSHE  GN +GID+S+SGEHA + Y+E+     + DG    K STNGTW RLSGMH ES  Y ++N +E+L GTVRF V+++  VVE+EL
Sbjct:   18 IIPAHSKLRDEFTCPITREIISEPVIAADGHTYDKSAIEQWIHFMQNKRMKPTSPKTGEELEHLHLIPNHNLKRLLRDMLVEGRGDALYQPDADAMAKQQENASSSDKDAQSYNCDNVSSXXXXXXXXXVQTTVMANASASNSKGGMALVREKVLNLKCLGPNESEWNNRSFKVTESGCIGGRRRPTVTAEKQNDRLKQLHFIQFTEATVSRRHFEICYDKNVEEFRIRDLGSAGGTFVRIPPGKSHVMAPGTMIMVGKHQLVAEKFELSS---------AAAAAHQEEIAGSGDAVVGDVDEDVQRLNDRSSTSPGPDQXXXXXXXSQMSASALTPRNDVAEDQEE------KPMEAAQHHYQHLMDHNEETDCNILQWADMQKA-----------------------PSNEGTAGDDCVSVRSSVDCDQDSMSVASAENNLPVTQS-LVDSNSNYVSATNSVNGPPVLMLRCFAPEGTPIQNKEYPISKMGATLGRKQSNTISFSHEVNGNQVGIDSSVSGEHANLKYNENTKLFELSDGVGIGKCSTNGTWVRLSGMHKESGFYAIANQTELLFGTVRFQVSIDEQVVEREL 573          
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: A0A7S3MFD7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFD7_9STRA)

HSP 1 Score: 269 bits (688), Expect = 2.630e-75
Identity = 208/598 (34.78%), Postives = 289/598 (48.33%), Query Frame = 1
Query:  355 VRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDEDPREVPGERGQAEGRRWERYKEENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAM--LAGADFMQFSDATVSRRHFGIVFDKE----EKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQLEVTEVSPTDTLVDTVDADGDAIMAEDKGGGDASRSRPPRPVDSQGARSNGLAGDAHAGSAAGVKEGAATDQEEGGGGQRNRGRATSTQSGKPSWSKV---------------EEELSVLRIGGMMGADGVSSGGDGVDHRGRQDSS---------------------RSPLPHD-NGAGGEDDASV-----LDTPLQEKHRG-EGEGGVSDDEKELEGLEKSFEAGVKLAKGHRRLCLECFAPEGTPIQGSRFFVGRKGATLGRRQTNTIAF----SHESGGN-VMGIDASISGEHARIVYDEDGDFLHIMDGTPTKPSTNGTWFRLSGMHTESRPYPLSNGSEILIGTVRFSVTLETMVVEK 1986
            ++G  +RDEF CPIT ELMRDPV+A+DGHTY++ AIE WL+NH  SP++G+PM+ L+ +PN+N+++LI+D++ EGG G Y+                                   N++  F +  E+ILVL+CLGP +SDWN  SF+V   GC+GGRK      +   + + F D TVSRRHF I    +       F + D GSAGGTF+R+  G    L+P M+I+LGKHQ  ++ V       D   A G +       G   + S     ++S+   S  L  +A    +     GAA + E     +R +       S     + +               EE LS   +G    ADG SS  D    +G  D                       R+   HD N    E D        + TP+   H G + +GG            + + A        RR  L C AP+G+P+QG  F V ++GA +GR+ TNTI        E+G   VM +D +IS EHARI ++       I DGT  KPSTNGTWFRLSG H ES  + LS G E+LIGTVRF V+ E+M + +
Sbjct:   34 LKGMKIRDEFICPITYELMRDPVVASDGHTYEKAAIEKWLKNHKISPRSGEPMDVLT-IPNINIKKLIQDIINEGGHGFYMSDIS-------------------------------NKDRMFEVRPEKILVLECLGPPESDWNSLSFQVNRFGCIGGRKHNPNDNMNNREPILFKDITVSRRHFEITNSVDIPTGGSVFHIRDLGSAGGTFIRIPHGKRKQLHPGMIILLGKHQFTISSVD------DAPSAGGQSFTGP--AGSSKNVSMRKSSLNSEAIMS--LVENAEKIISDFAGPGAAPNDELS---ERLKNLTMQLSSHLADDAPLTVGHDIRLTDHSLNEEERLSSPVLGRPPLADGRSSRADHKGDKGGDDDQMGSHTDNXXXXXXXXPKLTTMRTASAHDMNALHYEPDVDFDADAKMTTPMTHAHTGGDAKGGF-----------QRYTA--------RRCTLTCCAPDGSPLQGHSFIVDKEGAMMGRKATNTIPLLMKIEMENGEERVMNVDTAISSEHARIEFEPATGQFFICDGTVDKPSTNGTWFRLSGPHQESSSHVLSAGVEVLIGTVRFLVS-ESMTISE 566          
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: A0A7S1XUU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUU4_9STRA)

HSP 1 Score: 241 bits (615), Expect = 5.840e-69
Identity = 117/238 (49.16%), Postives = 156/238 (65.55%), Query Frame = 1
Query:  346 PILVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDEDPREVPGERGQAEGRRWERYKEENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQLEVTEVS 1059
            P LVRG  LRDEF CPITRELM+DPVIAADGHTYDR AIE WL NH  SPKTG+ ME + L+ N+NL +LI+DL+ EGGEGLY+  +D  S+ +      +PG                   YR+AL+ +++L  KCLGP +S WN +SFRV   G +GGR++P+ L   D + FSDATVSRRHF IV    + ++ + D GSAGGTF+R+      P++  +M M+GKHQ+   +++
Sbjct:   41 PTLVRGGQLRDEFVCPITRELMKDPVIAADGHTYDRSAIEQWLLNHRRSPKTGEVMESVGLIRNINLLKLIRDLVNEGGEGLYMAESDKASENKS-----LPGG------------------YRYALLRQKVLTFKCLGPAESSWNGRSFRVFANGVLGGRRRPSKLTERDHVTFSDATVSRRHFEIVHSTADSRYYIRDIGSAGGTFLRIQMNEKIPVFHGLMFMVGKHQMSARDLT 255          
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: W7U452_9STRA (SMAD/FHA domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U452_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.960e-61
Identity = 185/569 (32.51%), Postives = 254/569 (44.64%), Query Frame = 1
Query:  346 PILVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDEDPREVPGERGQAEGRRWERYKEENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHF----GIVFDKEEKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQLEVTEVSPTDTLVDTVDA--DGDAIMAEDKGGGDASRSRPPRPVDSQGARSNGLAGDAHAGSAAGVKEGAATDQEEGGGGQRNRGRATSTQSGKPSWSKVEEELSVLRIGGMMGADGVSSGGDGVDH---------RGRQDSSRSPLPHDNGAGGEDDASVLDTPLQEKHRGEGEGGVSDDEKELEGLEKSFEAGVKLAKGHRRLCLECFAPEGTPIQGSRFFVGRKGATLGRRQTNTIAFSHESGGNVMGIDASISGEHARIVYD-EDGDFLHIMDGTP-TKPSTNGTWFRLSGMHTESRPYPLSNGSEILIGTV-RFSVTLETMVVEKELTP 1998
            P++VRG  +RDEF CPIT ++ RDPV+A DG TY+R AI  WL  + TSP T + +    LVPNLNL+RLI DL+ EGG GL      ++                           E + E  F L  + ++VL+CLGP +SDW  +S  VT+ G +GGR++  +  G D M F D TVSRRHF    G V +     F + D GSAGGT++RL       L    MI++GKHQ  V   S    L     A   G + +A +     A+   P  P                                         G                           +G +  +   D +           RGRQ     PL             ++   LQ+        G        EG E+              L L+CFAPEG+P+Q   F VG +GA++GR+Q+NT++ S E GG V+G+D+++SGEH RI Y  E G F+ +  G    KPSTNGTW RLS +H  S    +    EIL+G + RFSV+ ET ++E  + P
Sbjct:    6 PVIVRGR-IRDEFQCPITAQIFRDPVVAKDGRTYERSAISKWLETNKTSPMTKEEISSADLVPNLNLKRLIYDLVAEGGHGLAAKCTTTE---------------------------ELSHETAFGL--DDVMVLRCLGPAESDWIHRSQVVTKEGILGGRRR-ILTGGKDSMVFQDTTVSRRHFEAGWGPVDETSLPSFYIQDLGSAGGTYLRLRPREIMELRDGAMILVGKHQFIVISPSRLHELQLPAPACRTGQSAVAFEAFHNSATIPTPLSP-----------------------------------------GAXXXXXXXXXXXFXXXXXXXXXXXXXALGTEDPN---DSIXXXXXXXXXGLRGRQGQDF-PLGR-----------LIQRYLQQPEAPLVSAG--------EGSEQPL------------LMLQCFAPEGSPMQHRVFAVGVEGASIGRKQSNTVSLSQEKGGEVLGLDSAVSGEHCRIEYHHEKGGFVLVDGGLGGDKPSTNGTWTRLSYIHMTSARQKVERDDEILVGGILRFSVSFETFLMESVVPP 467          
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Match: A0A482RTF3_9ARCH (FHA domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTF3_9ARCH)

HSP 1 Score: 191 bits (486), Expect = 4.700e-52
Identity = 98/226 (43.36%), Postives = 140/226 (61.95%), Query Frame = 1
Query:  352 LVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNHDTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDEDPREVPGERGQAEGRRWERYKEENREYRFALVAEQILVLKCLGPTDSDWNDKSFRVTERGCVGGRKQ-PAMLAGA-DFMQFSDATVSRRHFGIVFDKEEKQFSLCDFGSAGGTFVRLASGAHTPLYPSMMIM 1023
            ++RG  +RDEF CPIT ELMR+PV+A+DGHTY++ AI+ WL+ + TSP++G+PM+ L  +PN+NL++LI+D++ EGG G Y                                    N++  F +  E++L+L+CLGP +SDWN +SF+V + GCVGGRK  P   A   + + F D TVSRRHF + +DK    F L D GSAGGTF+R+  GA   L+P M+I+
Sbjct:   17 VMRGMKIRDEFLCPITYELMREPVVASDGHTYEKNAIDKWLKTNHTSPRSGEPMDNLC-IPNINLKKLIQDIINEGGAGFYTSDIS-------------------------------NKDRIFEVCPEKVLILECLGPPESDWNLQSFQVNKLGCVGGRKHNPEDSANLREIVLFKDITVSRRHFEVTYDKNS--FFLRDLGSAGGTFLRIRYGAKKQLHPGMIIL 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig908.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKS5_ECTSI4.220e-31679.18WD repeat, SAM and U-box domain containing 1 n=1 T... [more]
A0A6H5KH40_9PHAE3.560e-20668.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8M7_9STRA4.520e-15450.09WD repeat, SAM and U-box domain-containing 1 n=1 T... [more]
D7FNJ7_ECTSI2.000e-15154.71Armadillo/beta-catenin repeat family protein / U-b... [more]
A0A7R9UA93_9STRA2.330e-9434.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2NWM2_9STRA3.840e-9438.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3MFD7_9STRA2.630e-7534.78Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1XUU4_9STRA5.840e-6949.16Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7U452_9STRA3.960e-6132.51SMAD/FHA domain protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A482RTF3_9ARCH4.700e-5243.36FHA domain-containing protein (Fragment) n=1 Tax=a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig908contigP-littoralis_Contig908:10484..20951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKS5
Preferred nameKIAA1107
PFAMsAnk_2,BTB,DUF4596,EDR1,U-box
Model size3127
Max annot lvl2759|Eukaryota
KEGG koko:K10480
Hectar predicted targeting categoryother localisation
Exons10
Evalue0.0
EggNOG OGsKOG0167@1|root,KOG0167@2759|Eukaryota
Descriptionubiquitin-protein transferase activity
Cds size1791
COG categoryG
BRITEko00000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig908.6.2prot_P-littoralis_Contig908.6.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig908 11487..20618 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791813.4893243-UTR-P-littoralis_Contig908:10483..114861680791813.4893243-UTR-P-littoralis_Contig908:10483..11486Pylaiella littoralis U1_48UTRP-littoralis_Contig908 10484..11486 -
1680791813.6310394-UTR-P-littoralis_Contig908:20618..209511680791813.6310394-UTR-P-littoralis_Contig908:20618..20951Pylaiella littoralis U1_48UTRP-littoralis_Contig908 20619..20951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791813.507041-CDS-P-littoralis_Contig908:11486..116661680791813.507041-CDS-P-littoralis_Contig908:11486..11666Pylaiella littoralis U1_48CDSP-littoralis_Contig908 11487..11666 -
1680791813.519325-CDS-P-littoralis_Contig908:12984..130801680791813.519325-CDS-P-littoralis_Contig908:12984..13080Pylaiella littoralis U1_48CDSP-littoralis_Contig908 12985..13080 -
1680791813.5291271-CDS-P-littoralis_Contig908:13431..136201680791813.5291271-CDS-P-littoralis_Contig908:13431..13620Pylaiella littoralis U1_48CDSP-littoralis_Contig908 13432..13620 -
1680791813.5437658-CDS-P-littoralis_Contig908:14062..142091680791813.5437658-CDS-P-littoralis_Contig908:14062..14209Pylaiella littoralis U1_48CDSP-littoralis_Contig908 14063..14209 -
1680791813.5536351-CDS-P-littoralis_Contig908:14461..149351680791813.5536351-CDS-P-littoralis_Contig908:14461..14935Pylaiella littoralis U1_48CDSP-littoralis_Contig908 14462..14935 -
1680791813.5635693-CDS-P-littoralis_Contig908:15246..153631680791813.5635693-CDS-P-littoralis_Contig908:15246..15363Pylaiella littoralis U1_48CDSP-littoralis_Contig908 15247..15363 -
1680791813.573809-CDS-P-littoralis_Contig908:15714..158821680791813.573809-CDS-P-littoralis_Contig908:15714..15882Pylaiella littoralis U1_48CDSP-littoralis_Contig908 15715..15882 -
1680791813.58508-CDS-P-littoralis_Contig908:16510..167651680791813.58508-CDS-P-littoralis_Contig908:16510..16765Pylaiella littoralis U1_48CDSP-littoralis_Contig908 16511..16765 -
1680791813.6074424-CDS-P-littoralis_Contig908:18245..183891680791813.6074424-CDS-P-littoralis_Contig908:18245..18389Pylaiella littoralis U1_48CDSP-littoralis_Contig908 18246..18389 -
1680791813.6183968-CDS-P-littoralis_Contig908:20597..206181680791813.6183968-CDS-P-littoralis_Contig908:20597..20618Pylaiella littoralis U1_48CDSP-littoralis_Contig908 20598..20618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig908.6.2

>prot_P-littoralis_Contig908.6.2 ID=prot_P-littoralis_Contig908.6.2|Name=mRNA_P-littoralis_Contig908.6.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=597bp
MLNGPILVRGSALRDEFSCPITRELMRDPVIAADGHTYDREAIEMWLRNH
DTSPKTGQPMEQLSLVPNLNLRRLIKDLLVEGGEGLYLHHADSDSDGRDE
DPREVPGERGQAEGRRWERYKEENREYRFALVAEQILVLKCLGPTDSDWN
DKSFRVTERGCVGGRKQPAMLAGADFMQFSDATVSRRHFGIVFDKEEKQF
SLCDFGSAGGTFVRLASGAHTPLYPSMMIMLGKHQLEVTEVSPTDTLVDT
VDADGDAIMAEDKGGGDASRSRPPRPVDSQGARSNGLAGDAHAGSAAGVK
EGAATDQEEGGGGQRNRGRATSTQSGKPSWSKVEEELSVLRIGGMMGADG
VSSGGDGVDHRGRQDSSRSPLPHDNGAGGEDDASVLDTPLQEKHRGEGEG
GVSDDEKELEGLEKSFEAGVKLAKGHRRLCLECFAPEGTPIQGSRFFVGR
KGATLGRRQTNTIAFSHESGGNVMGIDASISGEHARIVYDEDGDFLHIMD
GTPTKPSTNGTWFRLSGMHTESRPYPLSNGSEILIGTVRFSVTLETMVVE
KELTPDNRNHFMALARDHGRRASPPLGANIEFSGHDRRVQGAGLSR*
back to top

mRNA from alignment at P-littoralis_Contig908:10484..20951-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig908.6.2 ID=mRNA_P-littoralis_Contig908.6.2|Name=mRNA_P-littoralis_Contig908.6.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=10468bp|location=Sequence derived from alignment at P-littoralis_Contig908:10484..20951- (Pylaiella littoralis U1_48)
TCACAGAGCGAGCCACGACGGGAGAGTGCCTGCGACTTGACAGCAAACCC CACCTATTTCAAGCGCGTAACGGGCACGCTGAGTGAATATCACCACCTGG ACAATACGGAGTAGTGAAAATACTCGTTGTGGCAAGCGAGGGACTGATCT GGAGAAAGTTTGACACTTTCGTCGAGTCGTCGAGCAGTCTCGGATCCCCT TCCCTTTTTTTCGTATTTTTACACTAACACAACTCGAGTTTCTTCGCTCA TCTGCTTCGAGCTCGGGGGCTCGGGTCTTGGCCAATCTATCAGAGCAGCT GCTGAGAGGAGCGGTGAGGGATTCGGAGGGTCCATGCTGAACGGGCCTAT ATTGGTGAGAGGGGATCGCTATAAATGCGACGAGCCTGGCGGTCAGGGTA TCGAAAGTTCGGGGACTTTGTAATACTTTTTTCCCACATACCTGGTAAGA AGTACTTCGAGTAGTTCCCTAGCGCCATCCACGCAAGTCTCCTGTGTCGT GCCTCTCCAGTTTGGGGCTGAACTCCCGCTTGAAGAATATCGACCCTGCT GCCGGTTGAACACTTCCGAGTTCACCGTTGTAGCTCGAGCTCGTTGAACT TCCCGAGTCCCTTTATATGATTTGTCATGCCAGTTTCGCCCTGGCCTCAC TCCATATCGTCGTTGCGCCGTCGCTGGAATTATTAAAGCGGCGTAGTATT AAAATCAGTCGACAATCAGCCCTATTTTTCAGACTGGGGGACAAATACAC CGCGTTTGTTTGTAGCCGCCGACCGTCCGTGTGGTCCAGTGGTCCTTGTG AACGCTCCAACACTCTGCCACTCGCCCATTGTATGTAGGTCACGGGCGTG AATCCCGGTGAACTGGTTTTCCCTTACGCAATACGTAAAAGTCGAAAGCT TTTATTTCGCCAGTGAACAGAAAAATCATGGGAAATGGCGACACAATAAT ACAGCTGCTGCATGTTGTATTCGGTATTCGAAGTATAATACGCGTACAGA AACAGTAGCTCGAACCCTTTCGCTACAAGAATTCAAGGCAGGCTCCGTGA AAAGGAATGTATGATATCATTTCATAAGTAAGGTTCTCCTGTGCTACCTC TGGTCGTGCTGCACGCCCGACTTTTACCGAGGGAAAGGTGTAGACTACTC TCCAGGTTAGATGGGATTGGAAATACACACACCATAGTCCATATATTTTA TTTTTTCATTTTTTTTCCTCCTAGCACGATATGTGCCTGGTTTGTGACCA CGGGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAACAACAA CACCGTACGGCAGTTTTGCTTTGGGTTCCCTCTTACCCCTTTGACTGCGT TGCGAATTCAACATGTCCAAGAAACTACCTGCTTATATATAACTGATGTA GGCGAGCTGTACAGAGTATAGACCTTTGGAGACAAGCCGTGATTTCATTG GACACACACATCGGCGGTTTCTGTAGGTATATACCGTTCCGTATCGTGTG TATACGATGGCAGCAGCAGCCGGTTAGAATAGCGGACAGACCGCCGTAAT CGAAGAGAGGGTGTATCAGTAGTCCCCTGGGTACCTGTATGAAGTACCTT ATCAACGCAACCTCGAATGCCCTTCAAGTGCGACCGATTACGTATGATAC TTGTACTTTGAACTGCTGTCAGGTAGCCTTCGTTCGTCTCTAGGAACTGC TGCCGTCAGGTATCGTCTGACCCGCGCACACGTACAAAACACGAACAAGT ATTATCGTGATATTTGTACTCAGCCAGGATAGGCTCGTCCCTGTCTCTGC TACGAGTAGTTGTATACATATGATACGAGTATCGTAGCCCCTCTTTGCAT TTCTCTAGGGGCGGTTCGCGCTGCTACTTGCCTTTAGTCGTTACAAATCA TATGAGATCATGTCATGAACGAAGCTCACTTGACATATATTTCATACTGG TATCACACACGACACAATTCATGGTGTTTCTGAACTGCAAACCGGGTGAA GGGGACTCGAGGTACTTCGTATATATTTATGTACAGCATCACATGTACGC AGGAAACCCCGTTTGTGTCGTATCCCGCAAGCAAGAGAGCATACAAGGTC CAACCTCACTCATGAATCACGCTATCGGCGATCAAATTGGGCATAATTTC GGCATGTCCGTGTTCAAGTATGGTGTGCTGAAGACACACCAGGAGGTGAG AAGGAGGTCTTGCCATCTTACTCTCGATGGTATAATTGCCATGTCCCATC ATTTGCATAGCCCGGTAGAACTTTCTCTCCGTCAAGGTTCGAAAGGGGCT ACTTTTTTACCACTCCTGTGAACAGGGCGCTGCCTCTCCACTGAGCAAAT GAGGTGGATGGATTATCCAAGAGTCTGAGACGATAGTGCTGGTGTGGTGG TGTGATTTTGAGTTTTTCAGCGAACAGGGTTGATCAACCGGGCTGCACGT TGTTTAGCCGCTGACTTCAACGATTTTTCGCTGCCTTTTTCTGCTGTTAC TTTGCTCTCTCTCGCCCTCTTTATGCCCTCTCCAAAATGACTGTTTTCCT CGAAACACCAAGGTGCGGGGCTCAGCTCTCCGGGATGAGTTCTCTTGTCC CATTACCCGCGAACTGATGCGTGATCCGGTGATTGCTGCAGACGGCCACA CGTACGACAGGGAGGCGATCGAGATGTGGCTCAGAAACCACGATACCTCC CCGAAGGTGAAATGGTACAGCAGCACGTAGTAAATTCTACGGTCGAAATA CACTTGTATTTTGTCTCTTTTCGTACCGTACACCGAGGGAAAGGGATCGC TGTCCCCTTTCTCGCGATAAAACCTCAACCAAAACAAGGCAAGCACCGCA GAGGGAAGTGGGAAAAAAAAAAACTCCTGTGTTGACTTCCCCCTGTGTGA CCCCAGTTGGAGCGTCGACCTACCCGAAAGGTCCAGAGTGGCGTCCAATG AAAGGGATGACAACACACACACACCGTTTACCCTGCTAGTAGTAAGGTCG TAGGTTCGATTCCTCTGAGGCGTTTCTTGCGACTTTATGGTGGAAAGCGA ATTCGTGAGTAAACAGAGGGAAGGGGTTGTTGAACCCGACTCGCATTTAA AATCAAAAGCAAGTACCGCAGGAGGAATGGTGGGGGCAGTAAAACAAAAA AAGCAAGAAAGCTCGTATGTGTCCTTCCACCTGTGACCCGGGCTGGTTCA CCCACTTCATACCGAAAGGTGTAGACTGGTGCCCAGAATAAATGGGATGA CAACACACACACCACACACACACCGCCGCGTGTCTTGTGTTCTCTATTTC AGGAAGGTACGTACTCCAAGCAAGTACCACGATGATATGTTGGGCACCTC TAAACACCATAGCATTTGGAAGGATTGTCATCAAGGTGGCACACACGTGT TGCACTTGTACACTTTTTAACGTGAATCTAACACTGAGAGGTTGCACCTG GTGCTTTTGGGGATAGTGCTGCTACTGCCCCTCCCCCCCCCCCGACCGAA TCATTTATTTCCCGTTCGACGCTTGCACACCTTGCGTTTACTTATATGCA CAACAATCATCCGTACGTCCAACATTGACAAGAGACAAGAGCACATGTCG GCGGATGTTTGGATTTGTTGCTATCGCGTGATTACGACGTCATGCAGGTG TCTCCCTCCGTTCCGCGCTTCCTCCGCGTCTACAGACAGTACCGGCCCGC TAATAAGAAAGCTCATTTGAAGAAAGTCAGCCTGAGATTTTCAGAAAATT AAGAAAGTGCCCAGCCTGGGCGGCGAGTGCTACACTCAATCCTATACAAT ACTGAGTACATAGGAAAGTGTCGTGCTCGACTTTCAACCCAACATAAGAA GTCAGCCTGAGCCAGATTTACTGGTTTCTTATTAGTGGGCCGGTACTGTA CCCGTATCAAACATCAAAGTTAACCTTGTGCCAGGTTTAGATAAATGCAT GTCAGGTGCCTTGGGATTACAACCCCAGGGTATCAGGTTTGCATACAGCA TTTACACCGATTGCTCCACCTGTTACGTCCTTACGTTCATTCATCCGTGA TGCAACCCCAACGGGTACCTGATGTGTTTGGTCGATTGGTGAACTAGTTT TGATTGTGAGTGATTCTTTTACAGTTTTTATGCTTGATACTTGTTTCGGC GTTTGCTGTTGCTGTTTCCTCCCGTTTCTTCCCCAGACTGGCCAGCCCAT GGAGCAGTTATCTCTTGTGCCGAACCTGAACCTACGACGGCTGATAAAAG ACCTCTTGGTTGAAGGGGGCGAGGGGCTGTACCTGCACCACGCTGACAGC GATAGTGATGGGCGTGACGAGGACCCAAGGGAGGTTCCTGGGGAGCGAGG ACAAGCAGAAGGAAGGCGGTGGGAGAGGTATAAAGAGGAAAATCGGGAAT ACCGCTTCGCGCTCGTGGCCGAACAGATTCTCGTGCTCAAGGTGCGACGA AATATAGACGTAGAGTTTTGTATTGTGGCGTTTAATAAGGCTTTCACGAA TTCAGGAAGACTGAAGTACGACGTGGAGCTTCGAGTTCAAGGATGGCGTT AAGTTGTTTGCAGAAGGCCCATGTATCACATACAGAATGCATATACGGTA CAAGGATATGGCTTTGCTCGAGGAGCAAGGTATCGTAAGCTATAGCATTG GAGTTCAGTAGTTACGTGTTTGAAGGCTCGAGGAAATCTGTATTGCTGCA TGAGCTCGTCGCGTTCAAGCTTCTCACATAGGCAATGCACATGTCAAGTG TGTCGGTCCTGCTCATGCGGCGAACTGCGGCGAACATGTCATGAACTACC AAATTGATTCTAGAGCGTGTGGTGTGTATCGTGCATTCCTAGCGATGAGC ATCATTCCTCCCGACACACGAAGTCCGTGATGATTTTCGGTCGTACGAGT ATGGCGCCTCCCTCAATGACCTGCATTCGCATTCTGCTGTCCGTGCCGCC GAAATATCTGCCTCCTCTCTGCTGTGTCTTTTTTTTTAAACTACCGCTGT CTCGTGTCTCTCTGGGCTGTTATTTTCCGCCGTGTGGGTGCTGATGCTGG TGCTACTGCCGTCTGATAGTGCCTGGGCCCTACGGATTCTGATTGGAACG ACAAGTCGTTTCGTGTCACCGAACGCGGGTGCGTGGGGGGGCGTAAGCAG CCCGCCATGCTGGCAGGGGCCGACTTCATGCAGTTCTCCGATGCAACCGT CAGCAGGCGTCACTTCGGCATCGTCTTCGACAAGGAGGTATCCTTTTGTT TTCGATTCCGCTATGTTTTGCGAGCCCCGTCCGTCAATCGCTCAGGATAT TTTGCGATTGCCTAGCTGTGTCAGATTGATTGTTTTCTGAATATTTTATC GACCCAGGGGTGATGACACACACAATTCCTCGCCTCCAGGCCCGCTGACA ATCCTTTGTGCTGTGCTTAGCCTGTGAATGGTCGTCAAGATTTGTAAGTT GCGGGTGTGCTGTACGATATACGAATTACTCAAAACCTCGGGTGTCGTTC GCGGGATTCCGCGGTCCATGTCTCAAGACGTCCTCTTCGACGTGTCTGCC CTGCCCCGCCACCGCCCGCCGCTGTACCATTTTTTTAGGAGAAACAATTC TCGTTGTGCGACTTCGGCAGCGCAGGCGGGACATTTGTTCGCCTTGCCTC AGGGGCACACACTCCTCTTTATCCCAGTATGATGATCATGCTTGGGAAGC ACCAGGTGTGTTGACCCCACAGGGCTACTTGTAGCTTGAGGGCGCCCGTT TACGCGAGAAATGATTCATACCGATGGCCTGTGCTGCACGCCGTGCAGAT TGTCCTCGCTCGCACTATAGTTTTAGTACGGAATTTGTTGAAAGTACCAC GCGAGCCGGCGTTGCCGTTTTTCTTTTGATGAAACGCCGGCCATGGCCTA TCGCTCAAAGCACGAGACCCTCAAAAACATTCTGGATTGCCGTACAAGTT TTTCCGGCCCGCAATGCTTGCTTACCCTTCCCCGATACCCATCCCACACC TCTACCTATACACCAGCTGGAGGTGACGGAAGTGTCCCCCACCGACACCC TAGTCGACACTGTTGACGCTGACGGTGACGCCATCATGGCAGAGGACAAA GGCGGCGGCGACGCATCTCGTTCCAGACCACCAAGACCAGTGGATAGCCA AGGGGCACGCAGCAATGGACTGGCTGGCGATGCCCATGCCGGCAGCGCGG CAGGCGTGAAAGAGGGGGCCGCAACAGATCAAGAGGAAGGCGGGGGCGGG CAGCGAAACCGCGGGCGCGCGACCAGCACACAGTCAGGCAAACCATCGTG GTCGAAGGTGGAGGAGGAGTTGTCAGTTTTGAGGATCGGGGGGATGATGG GGGCGGACGGAGTTTCTTCCGGGGGAGACGGGGTGGATCACCGGGGGAGG CAGGACAGCAGTCGATCACCGCTGCCCCACGACAATGGGGCCGGCGGAGA GGACGATGCGAGCGTGTTGGACACTCCTCTACAGGAAAAAGTAAGGCTCG CACAGTAGAGGGGATCCGACTGCCGGTGCTGGAGCTGCCAGTGTCGCCGG TTGCTTTCGACTGTCATGACTTGTGTTGCACGGTAGTTGCGCTTCCTACG GTAGTAGTTAAAGCACAATTCCTAACGCATCCGCGATGTATTCTGCTGTC TCGGCACCCTGGCGAGATGTTGTCAGTATCTAGTTCCAACGCTTACGTTT TTCCTTCCGCGTGTATTTTTCGCGGTCATTGCTCCTCGTTAGCACCGCGG TGAGGGAGAGGGGGGCGTCTCGGACGACGAGAAGGAGCTGGAGGGACTAG AAAAGTCTTTCGAGGCCGGGGTGAAGTTGGCAAAGGGGCACCGAAGACTC TGCTTGGAGTGTTTCGCGCCAGAAGGGACCCCGATACAGGTATGATAGGC AAGCGCCGATTGCTGCTTCGTATATATGTCTTGAGTGTGTCTTCTTACGG CGGCCTGCCCGGGGTCGGTTTGTTGGTGCCGTGTGAGTTCTGCCACCGTG CCGGCCCCTACTGTTGTGGGCGACGATGTTTGTTAGGTTATCTCCCCATA TGCATTGCAGCTGACCCATTGTGATCTCGAAGCTTATGTGCCAGTAATCA GGAATATTGTCACCGGTTCTGGTCGACGTTGCTGGTCGGTGCTTGACTGT TTGGCTATGCGAAGGGTACAGTGGTGCTGTCTGAAGTGCCGGCGCACCTG CCTAATGAAAATTGGACTAGCTTTAAATAAGCCCGCTCCAAGTTGTTGTG GAAATCCACAACCGTTTTTGCCGCACCTGCTGGTTTTCGGCGTCGTGTAC CGAATCGATCAACCACAAAAACCAACCGCAGGGAAGTCGTTTCTTCGTGG GCAGAAAAGGGGCTACCCTTGGACGGCGACAGACCAACACGATTGCCTTC TCGCACGAGTCGGGCGGGAACGTCATGGGGATAGACGCCTCCATTTCGGG AGAGCACGCCAGAATCGTGTACGATGAGGACGGTGACTTCTTGCACATTA TGGACGGTACCCCCACCAAGGTGCGGACAATGTTCCGTTTGCAAGCGTTG TGTGCCAGGCGGTTTGCTTTGTGAACGCGAGTTAAACAACGGCGCGACTT CATCTGATCTAATAACAAAAGGATCAATGGCGAAGTGCTGGTACGGCCCG TCCTTGATGATGAAGCAGAAACTCGTCGGATTGAAACGTTTGGAACATCC CGTTGCCTTTTACAGCGCATTTGAAACGTACCCACGATGAACAAGAAAGA GGCGCAATTTTACAAGAAAGAGGCGAGATATTTTGAACGTCTACGACGCG TTGAGCACAGTGCCTTGCCCATCACGTTTTATGTGCGTTTCACTCGTCGT GTTTTTCTGCCGCCACTTCAGCCGTCTACGAACGGCACCTGGTTCCGGCT GAGCGGGATGCACACAGAGAGCAGGCCGTACCCCTTGTCCAACGGTTCTG AGATTCTTATCGGCACGGTAAGAGAAGAGGCGGCATGAACGAAACTTGGA CACTTGTTTGTCGGATTTTCTCTCATAATTGATGGCAGTGCTGTACTTTT AATCTCTCTAGTGAATGAGTGCCATCCTGTGGAGTGCGGAGTGCGGAGTG CGACTTGCTGGTCGGCACGATAAAAGCTTCATCGTCGATGGTTTGGAGAG GTCGAGAACTGCGTACAGCTGTGCAAGGGAAATAAGCCCATGTTTCGTAC CACTGCGTTGATCACTTGCCTTTCGGCTGTGTGCGTATTTCGCAGCTGGT CTGACCGTGGGCGTATTTCTCGTCCAGACTCAGGCGAATAAAGGGTAAAA ATAGGAAACAGTAGTCTGCCGACATGTCAAGTGGCTGTGCCCTCCTCAGC ACGTGATATTGAGAGTGTTCTCACGTTTGTGTTGTTTTTCCTAGAGTTGC ACCCTGGGTGAAGCATTTGGAACCAGGTATGACACCCGACCGGAGTTCGG GGGGTCGCACAGGAAGCGTCTTAGGTACCGGGACCCCGTTTCGACCTTGG TGCCCGGGTACCCGGTACCCAAACTTTGTCTGCTCCCCCACTACAAGTGT TTGAGCGGCTTGGGCGGTCCTCAGACGGCGCGGTAACGGACTTCATTTCG TCCCTTGGATGAATCGCGCCAAAGAAAGGGAGAGGGCGCCACCAGGGCCC GCTTTTTTTTGTGCATTTACTCGGTAGGATCGAGGAGATGGAATATAGGT CCCATGATCCTGTTCCTTACCTGCTGTTGAACACAATCTTGTTTGGAAGG CGTTGTCGCTCAAAGCCAGGCACAAACTTAATACTCCGTATGAACCGACA CCGCACAAATGCCCCCCCTTGTTACCGTTGGTTTCCCTCCGTAGTAACAC CCAACTCGCTAGTAGGCGGATAGGGGCATTATTTCTCTGCTCGTCCGCTC AGTGCTCGGCGCTCAGCGAGGGTGAAAAGGGAGGAGAAAGGGACGAAAGA GCTAGGAAAGGGGCTGAGGGCACAGTGAAGAGGTCTACAACTATGCGTGC ATGTACCCCCATCTTTGGGACGCCCGTGTTCCGAAAGTAGCAGGTGCCTG GGTACAAGCGGTTATACGTCATACCCGCGGTTCCCTGAGTTGTCCCGCGA CGGTTCCGGTCCAGACGGTTCTGGGTACCCACTACCGGGTACCAGGTTCC GAGCCAGACGGGGTGCAACTCTAGTTTTGACCCAATAACCGTTCGATCCA GGGTGTCTACGAATCCTTTTTCATGCTTCGAATTATTTTCTCACCGTTTG GTTTCTCCTGTCCGGCGCAACGACGCAAAATACAGGTGCGATTCTCGGTG ACGCTGGAGACAATGGTAGTCGAGAAGGAGCTTACCCCCGACAACCGAAA TCACTTCATGGCGCTCGCTAGGGACCATGGCCGCAGAGCCTCTCCGCCGC TGGGGGCGAATATAGAATTCAGCGGCCACGACAGGAGAGTTCAGGGAGCG GGATTGAGCCGGTGACTGCCCGGCTTGACTTTCGTCTGATCCCCGTACGT GTTGGCTTACAAAAGCAGGAGGGGTTAGCCAGGCGGGGGGGTCAAGGGAC TGCTGTGGCCGTTGTGCTTTCGTCTGTGACATATAATAGTTTTTTTTTCC ATCGTACGATATTGCTCGTAATATTTTTTTTCTGTAATCTGTGGATGGAA ATGTAAGAGTGGCACCAGTCCATGGCCTGGGTAAGAACGCTACCGTTACA TAGACTTGAATAGCACGGTTTTACGATTCCTTGGCAAATGCTCCGAGGGT TGAGGGTGGGGGAGTCGATAATTCGCATCAGGTTTCCCGTTACTCTTCGT AGGTAATCGCGTACTCGCCCAGATCTTTACAACAGGGCTTGGTTGCTCGA CTCGGTCAAGGGGATCTATGAAAGCTGCGCCTGTGTATAGTTAGTTAGGA AGGTGTGGTTTTGCAGTTGGGTTGAAGGATAGGTTGGAGGATTCCTTTGG ATTCACAGGTCCCTGTTTCAAAACTGCTCCCGCTTTTTTTGCCCTTGTCT GGCGAGGGTTACCAACTGTGAGGCATTTGCGGGTTGGGGATGGGGGGGGT GAGTGAGTGAATTTTCCATCATTTGGTGTGTTCATGTAATGCGAGGTTGG AACTCAAATGCAGCTGCGTGTAGCGAGCTTCAGCGCTTTACACATGATGT GTGTCGTCCGTTGTTTTTGGCGCTGAGCGTGTGCGTGGTTTTCAAAATAT CTTGAACGATCCAGATTTTCAATTTATCATACTGCGGGCGATGTGCTTCC GCTGGCTGCCCTTGTTCGGGTTCGGGTGTCACCTACTCCCGGTTTCATGT GCGCGTCTGCTGTGTCCACCTCGTTTCTCATTTGAAAGGTGGTTGTGTGC TATCATTGCGTACCTGAGGTGCCAAAAGTTGGGGCTCTCGACAACGCCAT CCCAGGCACTCACTCGTCGTGGTGTGGTGTAATCTCCCTAAAACACCCAA TCAAGCAAGTCTTTTACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig908:10484..20951-

>mRNA_P-littoralis_Contig908.6.2 ID=mRNA_P-littoralis_Contig908.6.2|Name=mRNA_P-littoralis_Contig908.6.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1791bp|location=Sequence derived from alignment at P-littoralis_Contig908:10484..20951- (Pylaiella littoralis U1_48)
ATGCTGAACGGGCCTATATTGGTGCGGGGCTCAGCTCTCCGGGATGAGTT
CTCTTGTCCCATTACCCGCGAACTGATGCGTGATCCGGTGATTGCTGCAG
ACGGCCACACGTACGACAGGGAGGCGATCGAGATGTGGCTCAGAAACCAC
GATACCTCCCCGAAGACTGGCCAGCCCATGGAGCAGTTATCTCTTGTGCC
GAACCTGAACCTACGACGGCTGATAAAAGACCTCTTGGTTGAAGGGGGCG
AGGGGCTGTACCTGCACCACGCTGACAGCGATAGTGATGGGCGTGACGAG
GACCCAAGGGAGGTTCCTGGGGAGCGAGGACAAGCAGAAGGAAGGCGGTG
GGAGAGGTATAAAGAGGAAAATCGGGAATACCGCTTCGCGCTCGTGGCCG
AACAGATTCTCGTGCTCAAGTGCCTGGGCCCTACGGATTCTGATTGGAAC
GACAAGTCGTTTCGTGTCACCGAACGCGGGTGCGTGGGGGGGCGTAAGCA
GCCCGCCATGCTGGCAGGGGCCGACTTCATGCAGTTCTCCGATGCAACCG
TCAGCAGGCGTCACTTCGGCATCGTCTTCGACAAGGAGGAGAAACAATTC
TCGTTGTGCGACTTCGGCAGCGCAGGCGGGACATTTGTTCGCCTTGCCTC
AGGGGCACACACTCCTCTTTATCCCAGTATGATGATCATGCTTGGGAAGC
ACCAGCTGGAGGTGACGGAAGTGTCCCCCACCGACACCCTAGTCGACACT
GTTGACGCTGACGGTGACGCCATCATGGCAGAGGACAAAGGCGGCGGCGA
CGCATCTCGTTCCAGACCACCAAGACCAGTGGATAGCCAAGGGGCACGCA
GCAATGGACTGGCTGGCGATGCCCATGCCGGCAGCGCGGCAGGCGTGAAA
GAGGGGGCCGCAACAGATCAAGAGGAAGGCGGGGGCGGGCAGCGAAACCG
CGGGCGCGCGACCAGCACACAGTCAGGCAAACCATCGTGGTCGAAGGTGG
AGGAGGAGTTGTCAGTTTTGAGGATCGGGGGGATGATGGGGGCGGACGGA
GTTTCTTCCGGGGGAGACGGGGTGGATCACCGGGGGAGGCAGGACAGCAG
TCGATCACCGCTGCCCCACGACAATGGGGCCGGCGGAGAGGACGATGCGA
GCGTGTTGGACACTCCTCTACAGGAAAAACACCGCGGTGAGGGAGAGGGG
GGCGTCTCGGACGACGAGAAGGAGCTGGAGGGACTAGAAAAGTCTTTCGA
GGCCGGGGTGAAGTTGGCAAAGGGGCACCGAAGACTCTGCTTGGAGTGTT
TCGCGCCAGAAGGGACCCCGATACAGGGAAGTCGTTTCTTCGTGGGCAGA
AAAGGGGCTACCCTTGGACGGCGACAGACCAACACGATTGCCTTCTCGCA
CGAGTCGGGCGGGAACGTCATGGGGATAGACGCCTCCATTTCGGGAGAGC
ACGCCAGAATCGTGTACGATGAGGACGGTGACTTCTTGCACATTATGGAC
GGTACCCCCACCAAGCCGTCTACGAACGGCACCTGGTTCCGGCTGAGCGG
GATGCACACAGAGAGCAGGCCGTACCCCTTGTCCAACGGTTCTGAGATTC
TTATCGGCACGGTGCGATTCTCGGTGACGCTGGAGACAATGGTAGTCGAG
AAGGAGCTTACCCCCGACAACCGAAATCACTTCATGGCGCTCGCTAGGGA
CCATGGCCGCAGAGCCTCTCCGCCGCTGGGGGCGAATATAGAATTCAGCG
GCCACGACAGGAGAGTTCAGGGAGCGGGATTGAGCCGGTGA
back to top