mRNA_P-littoralis_Contig904.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig904.15.1
Unique NamemRNA_P-littoralis_Contig904.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig904.15.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 7.080e-53
Identity = 120/194 (61.86%), Postives = 131/194 (67.53%), Query Frame = 1 
Query:    1 MLNERRRRLSGGSDTPSDASSMTDEDLHVQFIRVEKELKLRTKELELARVEDELRLRKSDAWSVAGPAAGAVPATGFSTDAALMTGTATCATTVAAGAAVSSVPKSAEPVTGSTGGVAPASGAAVSRKPKQGREKKNLWCTIPTNQTQTPRITDEAEREGVKAMVKAIGETFQRAKVRTEISGKRDAVHHHMGF 582
            ML+ERR RLSGGSDTPSD SS TDEDL V FIRVEKELKLRTKELELARVEDELRLRKSDAW VAGPA GAVPATG                                     + G APASGAAVS++PKQGR    L+      + +TPR TDEA+REGVKAMVKAIGE FQRAKVRTE++ KRD VHH+M  
Sbjct:  890 MLDERRGRLSGGSDTPSDISSTTDEDLDVHFIRVEKELKLRTKELELARVEDELRLRKSDAWFVAGPAVGAVPATG-------------------------------------SYGAAPASGAAVSKQPKQGRR---LY------KKKTPRTTDEAKREGVKAMVKAIGEAFQRAKVRTEVNDKRDGVHHYMAL 1037
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BLAST of mRNA_P-littoralis_Contig904.15.1 vs. uniprot
Match: D8LJ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ26_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.210e-52
Identity = 115/177 (64.97%), Postives = 125/177 (70.62%), Query Frame = 1 
Query:    1 MLNERRRRLSGGSDTPSDASSMTDEDLHVQFIRVEKELKLRTKELELARVEDELRLRKSDAWSVAGPAAGAVPATGFSTDAALMTGTATCATTVAAGAAVSSVPKSAEPVTGSTGGVAPASGAAVSRKPKQGREKKNLWCTIPTNQTQTPRITDEAEREGVKAMVKAIGETFQRAKV 531
            ML+ERR RLSGGSDT SDASS TDEDL VQFIRVEKELKL+TKELE+ARVEDELRLRKS AW V GPAAGAVPA                 T + A AA+SSVPKSA PVTGS  G A ASG AVS++ KQGR              +T R TDEAERE VKAMVKA+GE FQRAK+
Sbjct:    1 MLDERRLRLSGGSDTSSDASSTTDEDLDVQFIRVEKELKLKTKELEMARVEDELRLRKSGAWFVTGPAAGAVPAXXXXXXXXXXXXXXXXXTNIPARAAISSVPKSAAPVTGSADGTASASGVAVSKQLKQGRGPYK----------KTSRTTDEAEREEVKAMVKAVGEAFQRAKL 167
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BLAST of mRNA_P-littoralis_Contig904.15.1 vs. uniprot
Match: D8LKS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS3_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 9.890e-12
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 LNERRRRLSGGSDTPSDASSMTDEDLHVQFIRVEKELKLRTKEL 135
            L+ERRRRL GGSD PSDASS TD+DL VQFIRVEKEL+L+TKEL
Sbjct:   15 LDERRRRLRGGSDNPSDASSTTDQDLDVQFIRVEKELELKTKEL 58
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BLAST of mRNA_P-littoralis_Contig904.15.1 vs. uniprot
Match: D8LBS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.730e-8
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 3 
Query:  312 QERRTRDWLYRWCCTRFWRGCLEKAQAR---PGKKELMVYNTDES 437
            QERRT DWL RW CTRFWRGCLEKAQAR   P KK   +  TDE+
Sbjct:   18 QERRTGDWLCRWYCTRFWRGCLEKAQARGWGPYKKTPRI--TDEA 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig904.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE7.080e-5361.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ26_ECTSI1.210e-5264.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKS3_ECTSI9.890e-1281.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LBS5_ECTSI3.730e-868.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig904contigP-littoralis_Contig904:29965..30721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size672
Hectar predicted targeting categoryother localisation
Exons2
Cds size672
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791811.940162-CDS-P-littoralis_Contig904:29964..302361680791811.940162-CDS-P-littoralis_Contig904:29964..30236Pylaiella littoralis U1_48CDSP-littoralis_Contig904 29965..30236 -
1680791811.9542718-CDS-P-littoralis_Contig904:30321..307211680791811.9542718-CDS-P-littoralis_Contig904:30321..30721Pylaiella littoralis U1_48CDSP-littoralis_Contig904 30322..30721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig904.15.1prot_P-littoralis_Contig904.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig904 29965..30721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig904.15.1

>prot_P-littoralis_Contig904.15.1 ID=prot_P-littoralis_Contig904.15.1|Name=mRNA_P-littoralis_Contig904.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MLNERRRRLSGGSDTPSDASSMTDEDLHVQFIRVEKELKLRTKELELARV
EDELRLRKSDAWSVAGPAAGAVPATGFSTDAALMTGTATCATTVAAGAAV
SSVPKSAEPVTGSTGGVAPASGAAVSRKPKQGREKKNLWCTIPTNQTQTP
RITDEAEREGVKAMVKAIGETFQRAKVRTEISGKRDAVHHHMGFAQQPSF
EVLSGQVLGKERRRIHPRSMVRQ*
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mRNA from alignment at P-littoralis_Contig904:29965..30721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig904.15.1 ID=mRNA_P-littoralis_Contig904.15.1|Name=mRNA_P-littoralis_Contig904.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=757bp|location=Sequence derived from alignment at P-littoralis_Contig904:29965..30721- (Pylaiella littoralis U1_48)
ATGCTGAACGAGAGACGTCGCCGGCTCAGCGGGGGATCGGACACCCCCTC
GGATGCCAGCAGCATGACCGATGAAGACCTTCACGTGCAGTTCATCCGAG
TCGAGAAGGAGTTGAAGTTGAGGACGAAGGAACTCGAGTTGGCGAGGGTG
GAGGACGAACTCCGCCTCCGCAAGTCTGACGCATGGTCTGTGGCCGGCCC
TGCCGCTGGCGCCGTACCTGCCACCGGCTTTTCTACTGATGCGGCACTCA
TGACTGGGACTGCTACTTGCGCTACAACCGTTGCTGCTGGCGCTGCTGTC
TCGAGTGTACCCAAGAGCGCCGAACCCGTGACTGGCTCTACAGGTGGTGT
TGCACCCGCTTCTGGCGCGGCTGTCTCGAGAAAGCCCAAGCAAGGCCGGG
GTCCGTACAAGAAGGCGAGCGCATTTCTTCCTTGACATCATGAGAAGAGT
TGGGGTTAGATGTGGGAACACTCAATATTTTTGAGAAAAAAAGAACTTAT
GGTGTACAATACCGACGAATCAAACGCAGACGCCGCGGATAACCGACGAG
GCCGAACGCGAAGGGGTGAAGGCGATGGTGAAGGCGATTGGCGAAACCTT
CCAGCGGGCCAAGGTCAGGACCGAGATCAGCGGCAAGAGAGACGCTGTTC
ATCACCACATGGGCTTTGCCCAGCAACCAAGCTTCGAGGTTTTATCTGGT
CAGGTACTTGGTAAAGAACGACGCCGAATTCACCCCAGGAGCATGGTACG
CCAATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig904:29965..30721-

>mRNA_P-littoralis_Contig904.15.1 ID=mRNA_P-littoralis_Contig904.15.1|Name=mRNA_P-littoralis_Contig904.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig904:29965..30721- (Pylaiella littoralis U1_48)
ATGCTGAACGAGAGACGTCGCCGGCTCAGCGGGGGATCGGACACCCCCTC
GGATGCCAGCAGCATGACCGATGAAGACCTTCACGTGCAGTTCATCCGAG
TCGAGAAGGAGTTGAAGTTGAGGACGAAGGAACTCGAGTTGGCGAGGGTG
GAGGACGAACTCCGCCTCCGCAAGTCTGACGCATGGTCTGTGGCCGGCCC
TGCCGCTGGCGCCGTACCTGCCACCGGCTTTTCTACTGATGCGGCACTCA
TGACTGGGACTGCTACTTGCGCTACAACCGTTGCTGCTGGCGCTGCTGTC
TCGAGTGTACCCAAGAGCGCCGAACCCGTGACTGGCTCTACAGGTGGTGT
TGCACCCGCTTCTGGCGCGGCTGTCTCGAGAAAGCCCAAGCAAGGCCGGG
AAAAAAAGAACTTATGGTGTACAATACCGACGAATCAAACGCAGACGCCG
CGGATAACCGACGAGGCCGAACGCGAAGGGGTGAAGGCGATGGTGAAGGC
GATTGGCGAAACCTTCCAGCGGGCCAAGGTCAGGACCGAGATCAGCGGCA
AGAGAGACGCTGTTCATCACCACATGGGCTTTGCCCAGCAACCAAGCTTC
GAGGTTTTATCTGGTCAGGTACTTGGTAAAGAACGACGCCGAATTCACCC
CAGGAGCATGGTACGCCAATAG
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