mRNA_P-littoralis_Contig121.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.32.1
Unique NamemRNA_P-littoralis_Contig121.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig121.32.1 vs. uniprot
Match: A0A6H5KH61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH61_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.160e-19
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   61 MAELPTPDIDGYVGGNSQACRAHFIEFVEADSSSRDSEGDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAA 300
            M +LPTPDI+ YVGGN QAC    ++ + A  +  ++  D+ RAFAFE+ S+VG RYC H+  P  LEDMS AK+KKAAA
Sbjct:    1 MEDLPTPDIEAYVGGNQQACYVQLVDVLSALPAGEENT-DVGRAFAFEVPSKVGARYCSHLSAPEPLEDMSHAKRKKAAA 79
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BLAST of mRNA_P-littoralis_Contig121.32.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.170e-8
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  178 DLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAA 300
            D+ RAFAFE+AS+VG RYC HV  P  LEDMS AK+KKAAA
Sbjct:  108 DVGRAFAFEVASKVGARYCSHVSAPEPLEDMSHAKRKKAAA 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KH61_9PHAE1.160e-1953.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE3.170e-870.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:113401..113701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789519.8836532-CDS-P-littoralis_Contig121:113400..1137001680789519.8836532-CDS-P-littoralis_Contig121:113400..113700Pylaiella littoralis U1_48CDSP-littoralis_Contig121 113401..113700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.32.1prot_P-littoralis_Contig121.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 113401..113700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.32.1

>prot_P-littoralis_Contig121.32.1 ID=prot_P-littoralis_Contig121.32.1|Name=mRNA_P-littoralis_Contig121.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
GLLPLSSPTLTQTNQYKLKQMAELPTPDIDGYVGGNSQACRAHFIEFVEA
DSSSRDSEGDLYRAFAFEIASQVGGRYCRHVEEPPALEDMSLAKKKKAAA
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mRNA from alignment at P-littoralis_Contig121:113401..113701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.32.1 ID=mRNA_P-littoralis_Contig121.32.1|Name=mRNA_P-littoralis_Contig121.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=301bp|location=Sequence derived from alignment at P-littoralis_Contig121:113401..113701+ (Pylaiella littoralis U1_48)
GGCCTGCTGCCGCTCTCCAGTCCAACCCTAACCCAAACAAACCAATACAA
GCTCAAACAAATGGCCGAGCTACCCACGCCCGACATCGATGGCTACGTGG
GCGGCAACTCCCAGGCTTGCCGCGCTCATTTCATAGAGTTCGTGGAAGCG
GACTCCTCGTCGAGGGACAGCGAGGGCGACCTCTATCGAGCGTTTGCGTT
CGAGATTGCCAGCCAAGTTGGCGGGCGCTACTGCCGCCATGTCGAGGAAC
CGCCCGCCCTTGAAGACATGAGCCTCGCCAAGAAGAAGAAGGCGGCTGCG
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig121:113401..113701+

>mRNA_P-littoralis_Contig121.32.1 ID=mRNA_P-littoralis_Contig121.32.1|Name=mRNA_P-littoralis_Contig121.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig121:113401..113701+ (Pylaiella littoralis U1_48)
GGCCTGCTGCCGCTCTCCAGTCCAACCCTAACCCAAACAAACCAATACAA
GCTCAAACAAATGGCCGAGCTACCCACGCCCGACATCGATGGCTACGTGG
GCGGCAACTCCCAGGCTTGCCGCGCTCATTTCATAGAGTTCGTGGAAGCG
GACTCCTCGTCGAGGGACAGCGAGGGCGACCTCTATCGAGCGTTTGCGTT
CGAGATTGCCAGCCAAGTTGGCGGGCGCTACTGCCGCCATGTCGAGGAAC
CGCCCGCCCTTGAAGACATGAGCCTCGCCAAGAAGAAGAAGGCGGCTGCG
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