mRNA_P-littoralis_Contig121.22.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: D7FWQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ8_ECTSI) HSP 1 Score: 169 bits (428), Expect = 2.540e-47 Identity = 91/123 (73.98%), Postives = 99/123 (80.49%), Query Frame = 3
Query: 153 MDGVASDDEFSLNPGA---GGD----GQEDEAPLRAALHYSIGEICSAEEGKLPMTASAVSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPKMVEKLASFESARNLSAGKK 500
MDG SDDEFSL P A GGD EDE LRAALHYS+GE+CS E GK+ MT SAVSTLAEVVFK++E+LALDLRVFAKHGKRAVVGVDDVKC ARKDPK+V KL FESA NL+AGKK
Sbjct: 1 MDGAVSDDEFSLEPRADQEGGDRDSNSHEDELALRAALHYSVGEVCSGENGKIAMTGSAVSTLAEVVFKFSESLALDLRVFAKHGKRAVVGVDDVKCAARKDPKLVGKLVGFESAMNLNAGKK 123
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: A0A6H5JDS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS7_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.980e-44 Identity = 91/123 (73.98%), Postives = 100/123 (81.30%), Query Frame = 3
Query: 153 MDGVASDDEFSLNPGA---GGD----GQEDEAPLRAALHYSIGEICSAEEGKLPMTASAVSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPKMVEKLASFESARNLSAGKK 500
MDG SD EFSL P A GGD EDE LRAALHYS+GE+CS E GK+ +T SAVSTLAEVVFK++E+LALDLRVFAKHGKRAVVGVDDVKC ARKDPK+VEKLA FESA NL+AGKK
Sbjct: 1 MDGAVSD-EFSLEPRADQEGGDRDSSSHEDELALRAALHYSVGEVCSGENGKIAVTGSAVSTLAEVVFKFSESLALDLRVFAKHGKRAVVGVDDVKCAARKDPKLVEKLAGFESAMNLNAGKK 122
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: UPI001455944F (centromere protein S-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455944F) HSP 1 Score: 67.4 bits (163), Expect = 4.640e-10 Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 3
Query: 231 LRAALHYSIGEICSAEEGKLPMTASA--VSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPKMVEKLASFESARNLS 488
L+AA+HYS+G++C +L +T S ++ L+E FK + A DL FA+HGKR+V+ DDVK +AR+ + + + +N S
Sbjct: 16 LKAAVHYSVGQVCEELSQELDVTFSRQFIAVLSEATFKQSAIFATDLEQFAQHGKRSVINTDDVKLLARRSAPLAKHIRDMNEQQNAS 103
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: UPI0014258CDC (centromere protein S-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258CDC) HSP 1 Score: 67.4 bits (163), Expect = 4.870e-10 Identity = 35/99 (35.35%), Postives = 59/99 (59.60%), Query Frame = 3
Query: 231 LRAALHYSIGEICS--AEEGKLPMTASAVSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPK-------MVEKLASFESARNLSAGKK 500
L+AA+H+S+G+IC +++ + T ++ AE F+ E +A+DL +FAKHGKR+V+ +DVK +AR+ M +KL + +A GK+
Sbjct: 17 LKAAIHFSVGQICEEVSQDTDVTFTKQVIAAFAEATFRQCETVAVDLELFAKHGKRSVINNEDVKLLARRSDALANHIKAMSDKLTAANAAEKEEKGKR 115
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: UPI001ABDCF26 (centromere protein S n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABDCF26) HSP 1 Score: 67.4 bits (163), Expect = 6.040e-10 Identity = 29/83 (34.94%), Postives = 56/83 (67.47%), Query Frame = 3
Query: 231 LRAALHYSIGEICS--AEEGKLPMTASAVSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPKMVEKLASFES 473
L+AA+HY++G +C AE+ ++ + A++ ++EV F+ E A DL +FA+HGKR+ + +DDVK ++R+ + ++S+ +
Sbjct: 15 LKAAVHYTVGSLCQEIAEDKQVNYSKQAIAAISEVTFRQCETFAKDLEMFARHGKRSTINMDDVKLLSRRSRSLYAHISSYSN 97
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: A0A5N5STA4_9CRUS (Centromere protein S (Fragment) n=2 Tax=Armadillidium TaxID=13346 RepID=A0A5N5STA4_9CRUS) HSP 1 Score: 66.2 bits (160), Expect = 1.890e-9 Identity = 36/92 (39.13%), Postives = 59/92 (64.13%), Query Frame = 3
Query: 231 LRAALHYSIGEICSAEEGKLPMTAS--AVSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPKMVEKLASFESARNLSAGKK 500
++AALH ++G+I + + +T S AV+TLAE++ + E A+DL FAKH +R+++GVDDVK +AR++ + E AS S + +K
Sbjct: 22 VKAALHLTVGQISKSVGNEFGLTFSKPAVATLAELINRQIEVYAIDLEAFAKHARRSLIGVDDVKLLARRNRSLTEVEASGSSVPRKAKRRK 113
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: UPI0008546255 (centromere protein S n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008546255) HSP 1 Score: 65.5 bits (158), Expect = 3.060e-9 Identity = 29/81 (35.80%), Postives = 54/81 (66.67%), Query Frame = 3
Query: 231 LRAALHYSIGEICS--AEEGKLPMTASAVSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPKMVEKLASF 467
L+AA+HY++G +C AE+ ++ + A++ ++E F+ E A DL +FA+HGKR+ + VDDVK ++R+ + ++S+
Sbjct: 15 LKAAVHYTVGCLCQEVAEDKEIQFSKQAIAAISETTFRQCETFAKDLEMFARHGKRSTINVDDVKLLSRRSRSLHAHISSY 95
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: UPI001AACC065 (centromere protein S n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACC065) HSP 1 Score: 65.5 bits (158), Expect = 3.060e-9 Identity = 28/81 (34.57%), Postives = 55/81 (67.90%), Query Frame = 3
Query: 231 LRAALHYSIGEICS--AEEGKLPMTASAVSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPKMVEKLASF 467
L+AA+HY++G +C AE+ ++ + A++ ++E+ F+ E A DL +FA+HGKR+ + VDDVK ++R+ + ++++
Sbjct: 15 LKAAVHYTVGGLCQDVAEDQEVQYSKQAIAAISEIAFRQCETFAKDLELFARHGKRSTINVDDVKLLSRRSRSLHTHISAY 95
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: A0A2D4HZT3_MICLE (Centromere protein S (Fragment) n=1 Tax=Micrurus lemniscatus lemniscatus TaxID=129467 RepID=A0A2D4HZT3_MICLE) HSP 1 Score: 62.8 bits (151), Expect = 2.130e-8 Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 3
Query: 216 EDEAP-LRAALHYSIGEICS--AEEGKLPMTASAVSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPKMVE 452
EDEA L+AA HY++ +C E+ + + +++ ++E+ F+ E A DL +FAKHGKR+ + V+DVK +AR+ +++
Sbjct: 11 EDEAQRLKAAFHYTVACLCQEVTEDKNIQFSRQSIAAISEITFRQCEIFAKDLEMFAKHGKRSTINVEDVKLLARRSKSLLQ 92
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Match: A0A670YKV0_PSETE (Centromere protein S n=4 Tax=Elapidae TaxID=8602 RepID=A0A670YKV0_PSETE) HSP 1 Score: 62.4 bits (150), Expect = 3.110e-8 Identity = 28/76 (36.84%), Postives = 49/76 (64.47%), Query Frame = 3
Query: 231 LRAALHYSIGEICS--AEEGKLPMTASAVSTLAEVVFKYTEALALDLRVFAKHGKRAVVGVDDVKCVARKDPKMVE 452
L+AA HY++ +C AEE + + ++ ++E+ F+ E A DL +FAKHGKR+ + V+DVK +AR+ +++
Sbjct: 8 LKAAFHYTVACLCQEVAEEKNIQFSKQTIAAISEITFRQCEIFAKDLEMFAKHGKRSTINVEDVKLLARRSNSLLK 83 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.22.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig121.22.2 >prot_P-littoralis_Contig121.22.2 ID=prot_P-littoralis_Contig121.22.2|Name=mRNA_P-littoralis_Contig121.22.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=300bp MPQRCTHILRTRSFAMDGVASDDEFSLNPGAGGDGQEDEAPLRAALHYSIback to top mRNA from alignment at P-littoralis_Contig121:92107..97109- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig121.22.2 ID=mRNA_P-littoralis_Contig121.22.2|Name=mRNA_P-littoralis_Contig121.22.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5003bp|location=Sequence derived from alignment at P-littoralis_Contig121:92107..97109- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig121:92107..97109- >mRNA_P-littoralis_Contig121.22.2 ID=mRNA_P-littoralis_Contig121.22.2|Name=mRNA_P-littoralis_Contig121.22.2|organism=Pylaiella littoralis U1_48|type=CDS|length=900bp|location=Sequence derived from alignment at P-littoralis_Contig121:92107..97109- (Pylaiella littoralis U1_48)back to top |