mRNA_P-littoralis_Contig900.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig900.32.1
Unique Name	mRNA_P-littoralis_Contig900.32.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5K5I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I2_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 5.480e-35
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYLGV 220
            CRVTVEW FK+MTSKWAFV MK QQK+LLSPV  QYKVATLLSN HSCLNGGN+ISQYFG  PP+LEEYL V
Sbjct:   11 CRVTVEWGFKDMTSKWAFVDMKCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 82

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BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5KVK0_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.060e-32
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYLGVAV 226
            CRVTVEW FKEMT KWAFVSMK QQK+LLSPV  QY+VATLLSN HSC+NGGNEISQYFG  PP+ EEY+ V V
Sbjct:  110 CRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAVKV 183

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BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5K6F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6F4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.190e-32
Identity = 56/72 (77.78%), Postives = 61/72 (84.72%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYLGV 220
            CRVTVEW FKEMT KWAFV+MK QQK+LLSPV  QY VATLLSN HSC+NGGNEISQYFG  PP+ EEY+ V
Sbjct:    4 CRVTVEWGFKEMTGKWAFVNMKPQQKFLLSPVAKQYLVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 75

[Close]

BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5KH29_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH29_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.410e-32
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYLGV 220
            CRVTVEW FKEMTSKWAFV MK+QQKYLLSPVG QY+VATLLSN+HSCLNGGN+ISQYF   PP+LEEYL V
Sbjct:  337 CRVTVEWGFKEMTSKWAFVDMKSQQKYLLSPVGKQYRVATLLSNMHSCLNGGNQISQYFNLQPPTLEEYLKV 408

[Close]

BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5K406_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K406_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.020e-32
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYLGV 220
            CRVTVEW FKEMT KWAFVSMK QQK+LLSPV  QY+VATLLSN HSC+NGGNEISQYFG  PP+ EEY+ V
Sbjct:  146 CRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPAFEEYVAV 217

[Close]

BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 6.420e-32
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYLGV 220
            CRVTVEW FKEMTSKWAFV MK QQK+LLSPV  QYKVATLLSN HSCLNGGN+ISQYFG  PP+LEEYL V
Sbjct:  349 CRVTVEWGFKEMTSKWAFVDMKCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 420

[Close]

BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 8.400e-32
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYLGV 220
            CRVTVEW FKEMT KWAFVSMK QQK+LLSPV  QY+VATLLSN HSC+NGGNEISQYFG  PP+ EEY+ V
Sbjct:  159 CRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 230

[Close]

BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5JR24_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR24_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.480e-31
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYLGV 220
            CRVTVEW FKEMT KWAFVSMK QQK+LLSPV  QY+VATLLSN HSC+NGGNEISQYFG  PP+ EEY+ V
Sbjct:  204 CRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 275

[Close]

BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5JM46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM46_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.500e-31
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYL 214
            CRVTVEW FKEMTSKWAF+ MK Q K+LLSPV  QYKVATLLSN HSCLNGGN+ISQYFG  PP+LEEYL
Sbjct:  270 CRVTVEWGFKEMTSKWAFIDMKCQHKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYL 339

[Close]

BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 7.850e-31
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 2

Query:    5 CRVTVEWVFKEMTSKWAFVSMKNQQKYLLSPVGVQYKVATLLSNIHSCLNGGNEISQYFGCPPPSLEEYLGV 220
            CRVTVEW FKEMT KWAFVSMK QQK+LLSPV  QY+VATLLSN HSC+NGGNEISQYFG  PP+ EEY+ V
Sbjct:  259 CRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 330

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig900.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K5I2_9PHAE	5.480e-35	81.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVK0_9PHAE	1.060e-32	78.38	DDE Tnp4 domain-containing protein n=2 Tax=Ectocar...	[more]
A0A6H5K6F4_9PHAE	1.190e-32	77.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KH29_9PHAE	1.410e-32	83.33	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5K406_9PHAE	6.020e-32	79.17	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5JS57_9PHAE	6.420e-32	83.33	DDE Tnp4 domain-containing protein n=4 Tax=Ectocar...	[more]
A0A6H5KY46_9PHAE	8.400e-32	79.17	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5JR24_9PHAE	2.480e-31	79.17	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5JM46_9PHAE	2.500e-31	81.43	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]
A0A6H5KB08_9PHAE	7.850e-31	79.17	DDE Tnp4 domain-containing protein n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig900	contig	P-littoralis_Contig900:90322..90873 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	552
Hectar predicted targeting category	other localisation
Exons	1
Cds size	324

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791809.0365286-CDS-P-littoralis_Contig900:90321..90645	1680791809.0365286-CDS-P-littoralis_Contig900:90321..90645	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig900 90322..90645 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791809.0475829-UTR-P-littoralis_Contig900:90645..90873	1680791809.0475829-UTR-P-littoralis_Contig900:90645..90873	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig900 90646..90873 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig900.32.1	prot_P-littoralis_Contig900.32.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig900 90322..90645 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig900:90322..90873+
coding sequence from alignment at P-littoralis_Contig900:90322..90873+

protein sequence of mRNA_P-littoralis_Contig900.32.1

>prot_P-littoralis_Contig900.32.1 ID=prot_P-littoralis_Contig900.32.1|Name=mRNA_P-littoralis_Contig900.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
CLSSNGRVGVQGNDFQVGFCKHEEPAEVPPQPGWCAVQGGHTVVQHPLVF
ERGQRDLPVLRMPSSLVGGVPRCGRVRQRDPHSLRTLVGCDRVLDQVGRN
GVRVGFE*

mRNA from alignment at P-littoralis_Contig900:90322..90873+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig900.32.1 ID=mRNA_P-littoralis_Contig900.32.1|Name=mRNA_P-littoralis_Contig900.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig900:90322..90873+ (Pylaiella littoralis U1_48)
TGCTTGTCGAGTAACGGTCGAGTGGGTGTTCAAGGAAATGACTTCCAAGT
GGGCTTTTGTAAGCATGAAGAACCAGCAGAAGTACCTCCTCAGCCCGGTT
GGTGTGCAGTACAAGGTGGCCACACTGTTGTCCAACATCCACTCGTGTTT
GAACGGGGGCAACGAGATCTCCCAGTACTTCGGATGCCCTCCTCCCTCGT
TGGAGGAGTACCTAGGTGTGGCCGTGTGAGGCAACGCGATCCGCACTCTT
TACGTACTCTTGTGGGTTGTGATAGGGTGTTGGACCAAGTTGGACGCAAT
GGTGTTCGTGTCGGCTTTGAGTAATTTCCCCATTTGCGTGCTGGCTAGGT
TTTTGCCCGGTGAAGGCCGAAACGTTTTGCAGGTGGGGCATGCACCCACT
TGCGCGGTTGTAAGGTTAGCGATCTTTTTGGACCTTTAGAGTTGATGCCG
CGTGCGCACGGACGCGAGGGGTAGGTTCTTGCTTGGGTGGAGTGCCAGAG
GTGTTGTAGTGCCGACGTCGGTCGTTCGGGTTTAAAACTACGAGAAGCGT
TG

Coding sequence (CDS) from alignment at P-littoralis_Contig900:90322..90873+

>mRNA_P-littoralis_Contig900.32.1 ID=mRNA_P-littoralis_Contig900.32.1|Name=mRNA_P-littoralis_Contig900.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig900:90322..90873+ (Pylaiella littoralis U1_48)
TGCTTGTCGAGTAACGGTCGAGTGGGTGTTCAAGGAAATGACTTCCAAGT
GGGCTTTTGTAAGCATGAAGAACCAGCAGAAGTACCTCCTCAGCCCGGTT
GGTGTGCAGTACAAGGTGGCCACACTGTTGTCCAACATCCACTCGTGTTT
GAACGGGGGCAACGAGATCTCCCAGTACTTCGGATGCCCTCCTCCCTCGT
TGGAGGAGTACCTAGGTGTGGCCGTGTGAGGCAACGCGATCCGCACTCTT
TACGTACTCTTGTGGGTTGTGATAGGGTGTTGGACCAAGTTGGACGCAAT
GGTGTTCGTGTCGGCTTTGAGTAA