mRNA_P-littoralis_Contig900.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig900.4.1
Unique NamemRNA_P-littoralis_Contig900.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig900.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig900contigP-littoralis_Contig900:3243..5543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size348
Hectar predicted targeting categoryother localisation
Exons2
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791808.750456-CDS-P-littoralis_Contig900:3242..33221680791808.750456-CDS-P-littoralis_Contig900:3242..3322Pylaiella littoralis U1_48CDSP-littoralis_Contig900 3243..3322 -
1680791808.764048-CDS-P-littoralis_Contig900:5275..55431680791808.764048-CDS-P-littoralis_Contig900:5275..5543Pylaiella littoralis U1_48CDSP-littoralis_Contig900 5276..5543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig900.4.1prot_P-littoralis_Contig900.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig900 3243..5543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig900.4.1

>prot_P-littoralis_Contig900.4.1 ID=prot_P-littoralis_Contig900.4.1|Name=mRNA_P-littoralis_Contig900.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MEADDERGQSRGSGRTRLIPQPGRGFMCSACRWRFSSLRDGRAHISTCKG
GEPAPSEPIAPAASDAARSSVGGQGLGASDDPGGEAIEDGASGMYDDGNA
SDGADDSPADRTKNTK
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mRNA from alignment at P-littoralis_Contig900:3243..5543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig900.4.1 ID=mRNA_P-littoralis_Contig900.4.1|Name=mRNA_P-littoralis_Contig900.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2301bp|location=Sequence derived from alignment at P-littoralis_Contig900:3243..5543- (Pylaiella littoralis U1_48)
ATGGAGGCTGACGATGAGAGGGGACAGAGCAGAGGATCTGGTCGAACTCG
ACTTATCCCTCAACCTGGCCGCGGATTTATGTGCAGTGCCTGTCGGTGGC
GATTCTCATCCCTCCGCGACGGAAGAGCCCATATTTCAACTTGCAAAGGG
GGAGAGCCAGCCCCTTCAGAGCCTATTGCACCTGCTGCGAGCGATGCCGC
TAGGTCAAGCGTGGGCGGTCAAGGATTGGGTGCTTCAGATGATCCGGGTG
GCGAGGCCATAGAAGACGGTGAGTTGACATGGACGAGGGAGAGATGAGCA
GAGCGTGATCTTAGATTGGCACCCTCCCGGCGCTATCGATACAGCAGTGT
CCAGAATGCGACGTATAATATCACCCCCCCTCCCCCCCTGGGCTCTTTTT
TTCCTCGAACGACGATTACGCCGCCACGAACAGGATACCAATATCAAAAT
ATACGGTGCGTTTTCACGACATATCTCCAACGCCACGCTTGTCGGCACCG
AAAATGGGGCAAGGGGGATATACCTGGTACAAAAAAAGTCTTATATTTTC
ACTCCGTAGGGGGGGGTCTTATCCTACGCAACCTACGGCTGTATCCTACG
TATATATACCAAGGGGTTTATATACAGCCGCATATCGTTCTACCCCCCGC
ATAGGCAAGGGCAACACCAATAGCGGCCAAACGGTTAGATGACAGCTTTC
TATTTTGTCGCATGCATGTTTATTTTTTACAAGCAGTTGGTCGGGGATTG
CTGAGCAGAATTGTTGGGTTCCGTGCGATTTGGGTACCGTAAAGTACAGT
CGAGGTCCCGGTTTACCGGCCCCTAGTGGCAAGAAAAAAAAGGGCCGGTA
AACAGGGCAAACCGGTATACTGGGGAAAACGCCCCCACGAGCGTAGGAAG
AGCAGGTGTATCTCCACAGACTTTGATGCAGTATGGCCTGTCTGTTTCTC
CTGCTGTCCTGGTAACCAGCACCTACAGTAGTAGTAGTATAGACGAGTGT
GTGATCGCTGTACAGTACCCACTGCTGGCTGTTGGTACTGGTGTTGGTAC
TGCTGGCCGATTCATTTGCTGCAGCGCATGACTGGCAGATACGGTTGACT
TCCTCGTTGCCTTCAGGATTTTGTATCTCGGCGCAAATGCGATGCAGACG
ACCTCCGCACGGGCCACAGCAGGAGAGTTCTGGGGTGATATTCCTGTCAC
TAAGGTGGCATAATTCTCCTGCCGCACACGACATGGTGTGCAGGCAGGTG
TTGGCTGCTACCCACAGCAACCGGAGTGCTGTGTTGTGTTGTGTTGTGTT
GTGTGCAGCAGTGTGTGTGGGAGTGTGCAGCAGCAGCAAAAGGGGCTCCG
CAAGCATGAAAAAAGGGAGGACCCCGGTATACCGGCACATAACCGGTAAA
CCGGGGTGCGGGCGTGTCAAGAAAAAAAAGGCCGAAAGTGGGCAAACCGG
TAAACAGGGGGCCGGTAAACCGGGACCTCGACTGTACCGTAAATTAGCAG
GAATGGCTGCTATTTCACCCCGTTGTAGACGTTTTAGGGTGTCTCCATGC
TCCCTGTGTCGCTTCTGTCTTTGCTTTGACCTGCTGCCCCGCACTTTAGG
ATAGGCAACACACCACAAAAAAATGCAAACAATCGCATGCAACCTCTCAC
CATACGGGGTGCCGGCAAACACCTTCGCACAAGTGCCGGATGAAAGCAGC
TTTTTCGCCAAACAGTCGGCTATATTCGTTCGCAGTGATACTTAAACTCC
AAGAACACAATCCCGTCGAAAATAACCCCGGGGTTAACACATCATGAACG
ATGTACCCCGGGGGGCTTCGCACTTGTATCTTGTGGGGGGGGTTTGGTAG
GCTGTTTTCACACAATGTTTCGTATTCTGATCCGATAATTATGCCCCCCG
AATTGGTGGCCTCGCAAGAAGAAAGCGTTTTCGTAGACCCAGGGTTGACT
TTGTTGTCATTTCCTGAATTATCGACCCTCGTATGCAGACCCGGGGCGAT
ATTTCTGCGCAACGGTTTCGTTCCGTCCCCGCAGACCCCGCCAAAGGGGT
GACGAAGATCCACTTACATGTAGAAACGACTTCATACTTCCTGTCCCGTG
CTCACTCGAAAACGTACGATACTGCATGTGCCTTGATCATTTTTAACAAC
GGCAGTATTTAAATCGTATCAAGTCGCCTGTGCTCGCTGTTGCTGCCACT
TGCCCCCTCAACTCGGCTCAGGCGCGAGCGGCATGTACGACGATGGTAAC
GCTTCCGATGGCGCCGACGATTCGCCTGCGGACCGAACGAAGAACACGAA
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig900:3243..5543-

>mRNA_P-littoralis_Contig900.4.1 ID=mRNA_P-littoralis_Contig900.4.1|Name=mRNA_P-littoralis_Contig900.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig900:3243..5543- (Pylaiella littoralis U1_48)
ATGGAGGCTGACGATGAGAGGGGACAGAGCAGAGGATCTGGTCGAACTCG
ACTTATCCCTCAACCTGGCCGCGGATTTATGTGCAGTGCCTGTCGGTGGC
GATTCTCATCCCTCCGCGACGGAAGAGCCCATATTTCAACTTGCAAAGGG
GGAGAGCCAGCCCCTTCAGAGCCTATTGCACCTGCTGCGAGCGATGCCGC
TAGGTCAAGCGTGGGCGGTCAAGGATTGGGTGCTTCAGATGATCCGGGTG
GCGAGGCCATAGAAGACGGCGCGAGCGGCATGTACGACGATGGTAACGCT
TCCGATGGCGCCGACGATTCGCCTGCGGACCGAACGAAGAACACGAAG
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