mRNA_P-littoralis_Contig90.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.126.1
Unique NamemRNA_P-littoralis_Contig90.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig90.126.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 556 bits (1434), Expect = 1.120e-169
Identity = 372/629 (59.14%), Postives = 416/629 (66.14%), Query Frame = 3 
Query:  834 QRREEPGDLVFRLTNTRDRTVILAPYSNLPVVVTASVVENESGSGAVGDGGXXXXXXXXXXXEATVGLFEFDSGLVRDDENGSCCCSGGDEVEPT--RTASALPG-------------------------EERETADDEDETWRGPSLTRCGPTLSLPAKATAIVWLNIQTGALTEPLPTAAVESGQAAAFDGIVALARISGGCFSCFSAAHDTIPVAVAA-------GRDVR---ETMTLLPPERVYCSGVGAAAAAAGGRRGSASVVEAPQLVKMFRTVGSFCWPRFEVVGSPNIDLGNIGHTTSRRGRRHFEVRLQSLCDMAVPVGMVAISPELEVVTEVGDGXXXXXXXXGVVKYKALVPRRSAALRRNNS-----ETTPGRADGGSYSGCGSXXXXXXXXXXXXXXXGFTSSARKELRGGATAAAVDGECTDMLWVPARGEATLVIQLRLSRRRQSWAGAQAFRICLANLADPSAEELVVNVIARVVTQLVRMVGLDEPPPSPISHRVYSPGTPTAPSSYMGSSSSSIWRRARSSSIEAFGSFGASEGGSLRLAPLAIPPLRGAAGRCAKSFQVKNVSGDTVSVTLRVTPTPEVAEVLSFGASLQQQDSSTGVYATAGADGRPS 2594
            +RRE+ GDLVFRLTN RDR V+LAPYSNLPV V+ SVVE E+  G  G+             +AT G+F FDS   +D                   RT  ++ G                                  +ET RGPSLTRCGP +SLPA+ATA+V L I+TG LT PLPTAAVESG+A  FDGIVA ARI G C S  +  + T   A A        GR      +T  L  PERVYC G GA     G     +  V AP LVK+ R VG+FC PRFEVVG+PN+DLGN+GHT SRRGRR FEVRL+SLCD AVPVGMV ISPELEVVT+   GXXXXX       YKALVPRRSAALRRN+S     +    RADG     C    XXXXXXXXXXXXX          RG A AAAVDG CTDMLWVPARGEATLV+QLRLSRRRQSWAG+Q FRI L NLADP AEE+ V+V ARVVTQLV ++GLDEPPPSPIS R+YSPGTPT   S++G S+  I RRARSSSIEAFGSFGASEGGSLRLAPLAIPPLRGAAGRCA SFQ+KNVSG+TVSV L V P PEVA VLS GAS+QQ DSS GVYA+ GADGR S
Sbjct: 3214 RRREQAGDLVFRLTNARDRAVVLAPYSNLPVCVSTSVVETENAGGVTGE--VEEEAEEDEHDDATAGVFVFDSSPAKDXXXXXXXXXXXXXXXXXXXRTLDSVAGGCEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEETPRGPSLTRCGPAVSLPARATAVVRLCIRTGELTAPLPTAAVESGKAVDFDGIVAFARIGGACASSVAVGNATAAAARAGLYEQQFGGRRAAVPGDTRALFLPERVYCCGSGATTD--GEEDDPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHTKSRRGRRRFEVRLRSLCDTAVPVGMVGISPELEVVTDAHGGXXXXXGHSRGGVYKALVPRRSAALRRNSSTASFSDAMSARADGS----CVFLGXXXXXXXXXXXXXXXXXXXXXRERGRA-AAAVDGGCTDMLWVPARGEATLVVQLRLSRRRQSWAGSQTFRISLVNLADPHAEEIAVDVSARVVTQLVSIIGLDEPPPSPISLRIYSPGTPTP--SHLGPSA--IRRRARSSSIEAFGSFGASEGGSLRLAPLAIPPLRGAAGRCAGSFQLKNVSGETVSVMLGVMPAPEVAGVLSLGASMQQ-DSSAGVYASVGADGRSS 3828
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BLAST of mRNA_P-littoralis_Contig90.126.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 531 bits (1369), Expect = 4.560e-161
Identity = 370/636 (58.18%), Postives = 410/636 (64.47%), Query Frame = 3 
Query:  834 QRREEPGDLVFRLTNTRDRTVILAPYSNLPVVVTASVVENESGSGAVGDGGXXXXXXXXXXXEATVGLFEFDSGLVRDDENGSCCCSGGDEVEPTRTASALPGEERETADDE----------------------------------DETWRGPSLTRCGPTLSLPAKATAIVWLNIQTGALTEPLPTAAVESGQAAAFDGIVALARISGGCFSCFSAAHDTIPVAVAAGRDVR----------ETMTLLPPERVYCSGVGAAAAAAGGRRGSASVVEAPQLVKMFRTVGSFCWPRFEVVGSPNIDLGNIGHTTSRRGRRHFEVRLQSLCDMAVPVGMVAISPELEVVTEVGDGXXXXXXXXGVVKYKALVPRRSAALRRNNS-----ETTPGRADGGSYSGCGSXXXXXXXXXXXXXXXGFTSSARKELRGGATAAAVDGECTDMLWVPARGEATLVIQLRLSRRRQSWAGAQAFRICLANLADPSAEELVVNVIARVVTQLVRMVGLDEPPPSPISHRVYSPGTPTAPSSYMGSSSSSIWRRARSSSIEAFGSFGASEGGSLRLAPLAIPPLRGAAGRCAKSFQVKNVSGDTVSVTLRVTPTPEVAEVLSFGASLQQQDSSTGVYATAGADGRPS 2594
            +RR EPG++VFRLTN RDR V+LAPYSNLPV +T SVVE E   G      XXXXXXXXXXX                                                                                    +ET RGPSLTRCGP +SLPA+ATA+V L I+TG LT PLPTAAVE+G+A  FDGIVA ARI G C S   AA+ T   A A   + +          +T  LL PERVYCSG GA     G     +  V AP LVK+ R VG+FC PRFEVVG+PN+DLGN+GHT SRRGRR FEVRL+SLCD AVPVGMV ISPELEVVT+   G        GV  YKALVPRRSAALRRN+S     +    RADG      G XXXXXXXXXXXXXXX      R     G  AAAVDG CTDMLWVPARGEATLV+QLRLSRRRQSWAG+Q FRI L NLADP AEE+ V+V ARVVTQLV ++GLDEPPPSPIS R+YSPGTPT   S++G S+  I RRARSSSIEAFGSFGASEGGSLRLAPLAIPPLRGAAGRCA SFQ+KNVSG+TVSV L VTP PEV  VLS GAS+QQ DSSTGVYA+ GADGR S
Sbjct: 1474 RRRGEPGEVVFRLTNARDRAVVLAPYSNLPVCLT-SVVETEIAGGVTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEETPRGPSLTRCGPAVSLPARATAVVRLCIRTGELTAPLPTAAVENGKAVGFDGIVAFARIGGDCASSVVAANGTSAAARAGLYEQQFGERRAAVPGDTRALLLPERVYCSGSGATT---GEEDNPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHTKSRRGRRRFEVRLRSLCDTAVPVGMVGISPELEVVTDAHGGGGDAHSKGGV--YKALVPRRSAALRRNSSTASFSDAMSARADGSCVFLGGXXXXXXXXXXXXXXXXXXXMRER-----GRAAAAVDGGCTDMLWVPARGEATLVVQLRLSRRRQSWAGSQTFRISLVNLADPHAEEIAVDVSARVVTQLVSIIGLDEPPPSPISLRIYSPGTPTP--SHLGPSA--IRRRARSSSIEAFGSFGASEGGSLRLAPLAIPPLRGAAGRCAGSFQLKNVSGETVSVMLGVTPAPEVVGVLSLGASMQQ-DSSTGVYASVGADGRSS 2093
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHH6_ECTSI1.120e-16959.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ8_9PHAE4.560e-16158.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:475087..477729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHH6
Model size2594
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.11e-132
EggNOG OGs28MMI@1|root,2QU5A@2759|Eukaryota
Cds size1158
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.2171144-CDS-P-littoralis_Contig90:475086..4762441680791807.2171144-CDS-P-littoralis_Contig90:475086..476244Pylaiella littoralis U1_48CDSP-littoralis_Contig90 475087..476244 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.231422-UTR-P-littoralis_Contig90:476244..4770551680791807.231422-UTR-P-littoralis_Contig90:476244..477055Pylaiella littoralis U1_48UTRP-littoralis_Contig90 476245..477055 -
1680791807.242374-UTR-P-littoralis_Contig90:477104..4777291680791807.242374-UTR-P-littoralis_Contig90:477104..477729Pylaiella littoralis U1_48UTRP-littoralis_Contig90 477105..477729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.126.1prot_P-littoralis_Contig90.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 475087..476244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.126.1

>prot_P-littoralis_Contig90.126.1 ID=prot_P-littoralis_Contig90.126.1|Name=mRNA_P-littoralis_Contig90.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=386bp
MTLLPPERVYCSGVGAAAAAAGGRRGSASVVEAPQLVKMFRTVGSFCWPR
FEVVGSPNIDLGNIGHTTSRRGRRHFEVRLQSLCDMAVPVGMVAISPELE
VVTEVGDGDGHGRGGGGVVKYKALVPRRSAALRRNNSETTPGRADGGSYS
GCGSSGCASSGGGGNGGSGGFTSSARKELRGGATAAAVDGECTDMLWVPA
RGEATLVIQLRLSRRRQSWAGAQAFRICLANLADPSAEELVVNVIARVVT
QLVRMVGLDEPPPSPISHRVYSPGTPTAPSSYMGSSSSSIWRRARSSSIE
AFGSFGASEGGSLRLAPLAIPPLRGAAGRCAKSFQVKNVSGDTVSVTLRV
TPTPEVAEVLSFGASLQQQDSSTGVYATAGADGRPS
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mRNA from alignment at P-littoralis_Contig90:475087..477729-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.126.1 ID=mRNA_P-littoralis_Contig90.126.1|Name=mRNA_P-littoralis_Contig90.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2643bp|location=Sequence derived from alignment at P-littoralis_Contig90:475087..477729- (Pylaiella littoralis U1_48)
TTTAACGGGTACCAGGGGGTGTTCCAGCGGGACGTTACCGTGGAGAACAT
GTCGTCCGGGTGTAGGGACCGAGCCGGTGCCACAGAGGCGGAGAAGCTGT
CGCACCCCGTCCGGCTGTTTGTTGACGATGGGGCCGTTTTGGTCAGCGCG
GGGCCGCGGCCAGAAACTTCCTCTGCAGCTGACTCAGCACCGTCACTTTC
GAAGCCCTACCTCTCGCCAGGATCGGGCGTCGACACGACCGACACCCAAG
CCGCTGTTGTTGTTGCCTCTGGGCTTAAGTCGCCGGCGCAGAACGGCGAG
GCACAGCTGTTGGACGAGACGGGTCGCGCGTTGCCGTCTCTAGAGACTCT
TTCTATGCCGTTTGTGGTGGCCGTTGCTCCGTACCGTGTGTATGATGCGT
CAGCGTCGGTGTCGACGTCAGCGGCATCAGCGGCAGAGGCGCTCGTATCC
GACGGAAGTTTTTCCCTGTCTCCCGGTTTTTATGGAGACGAATACCGACG
ACACCGGGACTCCTTGCGTCCGGAGGCTAGCAGGTTCTGCATTCTTCCCG
TCGTGGTTCGACGGGACGATGCCGGCGGCACCACCACTGGCTGCTACGAC
GATCTCGGCGAGATGCACGAGATCGAGGAACAGCAGGACGACGACGCGGA
AAGTCTCGACGAAGATGAAGACAATGGCGACCATGGCGAGGAATCGAAGG
ACGAGCAGCAGCAGCAGCAGTGGCAGCGGCAGCGGCAGCGGCAGCGGCAG
CGGCAGCAACAATTGCACAAGCCACGTGGAGGCCCAGGAGGGTGGGGCGC
GTTTGAAGCATCCCGTGATGCTAGGCGCTGCGGCGGCAGTGGAAGAAGCA
TTCGCGGGAGAGTGATCGACGGTCAGAGCCAGCAGCGACGAGAAGAACCG
GGCGATCTGGTTTTCCGTTTGACAAACACTCGAGATCGCACCGTGATCCT
CGCCCCATACTCCAACCTTCCCGTGGTCGTGACGGCGTCGGTGGTCGAGA
ATGAGAGCGGCAGCGGCGCCGTAGGCGACGGCGGCGACCGCGACAAGAAG
GAGGAGGACGAGGAGGACGAGGCAACTGTCGGTCTTTTTGAGTTCGACAG
CGGCCTAGTGAGAGACGACGAGAACGGCAGCTGCTGCTGCAGCGGTGGCG
ACGAAGTAGAGCCCACGCGGACAGCTTCGGCCTTACCCGGAGAGGAACGA
GAGACGGCAGACGATGAAGATGAGACGTGGAGAGGTCCTTCTCTGACGAG
GTGTGGGCCGACGCTGAGCCTCCCCGCCAAGGCAACGGCGATCGTTTGGC
TTAACATTCAGACCGGCGCCCTGACGGAGCCGCTCCCGACGGCAGCTGTG
GAGAGCGGTCAAGCAGCGGCCTTCGACGGCATCGTCGCCCTGGCACGCAT
CAGCGGCGGCTGCTTTTCGTGTTTCTCCGCCGCGCACGACACGATCCCGG
TGGCGGTGGCGGCGGGGCGTGATGTGAGAGAGACGATGACGCTGCTGCCG
CCCGAGCGAGTGTACTGCTCCGGTGTCGGGGCGGCCGCCGCCGCTGCCGG
AGGGCGAAGAGGCTCCGCATCGGTCGTCGAAGCCCCCCAGCTGGTGAAGA
TGTTTAGGACCGTTGGCTCGTTCTGCTGGCCGAGATTCGAGGTCGTGGGT
TCCCCGAACATCGACCTGGGGAACATTGGACATACCACCTCCAGGCGCGG
CCGCCGACACTTTGAGGTCCGTCTTCAGAGCCTCTGTGACATGGCCGTTC
CCGTCGGCATGGTCGCGATATCGCCGGAGCTGGAGGTCGTGACCGAAGTA
GGCGACGGTGACGGGCATGGAAGAGGAGGAGGAGGAGTCGTCAAGTATAA
GGCGCTCGTCCCCCGACGCAGCGCCGCTCTTCGCCGCAACAACAGTGAGA
CAACACCCGGTCGTGCCGACGGCGGCTCGTACTCAGGATGCGGAAGCAGC
GGCTGCGCCAGCAGCGGTGGCGGCGGTAATGGCGGCAGCGGTGGCTTCAC
GTCCTCTGCAAGGAAAGAACTTCGAGGAGGCGCCACAGCGGCGGCAGTGG
ACGGGGAATGCACCGATATGCTCTGGGTGCCGGCGAGAGGTGAGGCAACG
CTCGTGATCCAGCTCCGTCTTTCCCGCCGCAGGCAGAGCTGGGCGGGGGC
CCAGGCGTTCAGGATCTGCCTGGCTAACCTGGCGGACCCGTCCGCGGAAG
AATTAGTGGTAAACGTAATCGCTCGCGTTGTGACCCAGCTGGTGAGAATG
GTGGGGCTCGACGAGCCACCTCCCAGCCCCATCTCGCACCGCGTGTACAG
CCCCGGGACTCCAACCGCGCCCTCCTCCTACATGGGTTCGTCGTCGTCGT
CCATCTGGCGAAGGGCAAGATCTTCCTCCATCGAGGCGTTCGGGTCCTTC
GGCGCCTCCGAGGGAGGGTCCCTGAGGCTTGCGCCGCTCGCCATCCCGCC
TCTGCGCGGCGCCGCCGGCCGCTGCGCCAAGTCTTTCCAGGTGAAGAACG
TGTCGGGCGACACGGTGTCGGTCACGCTGAGGGTTACCCCGACGCCGGAG
GTAGCCGAGGTGCTCTCGTTCGGCGCATCTCTGCAGCAGCAGGACTCGTC
CACTGGCGTGTACGCGACGGCCGGGGCAGACGGGCGGCCGTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:475087..477729-

>mRNA_P-littoralis_Contig90.126.1 ID=mRNA_P-littoralis_Contig90.126.1|Name=mRNA_P-littoralis_Contig90.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1158bp|location=Sequence derived from alignment at P-littoralis_Contig90:475087..477729- (Pylaiella littoralis U1_48)
ATGACGCTGCTGCCGCCCGAGCGAGTGTACTGCTCCGGTGTCGGGGCGGC
CGCCGCCGCTGCCGGAGGGCGAAGAGGCTCCGCATCGGTCGTCGAAGCCC
CCCAGCTGGTGAAGATGTTTAGGACCGTTGGCTCGTTCTGCTGGCCGAGA
TTCGAGGTCGTGGGTTCCCCGAACATCGACCTGGGGAACATTGGACATAC
CACCTCCAGGCGCGGCCGCCGACACTTTGAGGTCCGTCTTCAGAGCCTCT
GTGACATGGCCGTTCCCGTCGGCATGGTCGCGATATCGCCGGAGCTGGAG
GTCGTGACCGAAGTAGGCGACGGTGACGGGCATGGAAGAGGAGGAGGAGG
AGTCGTCAAGTATAAGGCGCTCGTCCCCCGACGCAGCGCCGCTCTTCGCC
GCAACAACAGTGAGACAACACCCGGTCGTGCCGACGGCGGCTCGTACTCA
GGATGCGGAAGCAGCGGCTGCGCCAGCAGCGGTGGCGGCGGTAATGGCGG
CAGCGGTGGCTTCACGTCCTCTGCAAGGAAAGAACTTCGAGGAGGCGCCA
CAGCGGCGGCAGTGGACGGGGAATGCACCGATATGCTCTGGGTGCCGGCG
AGAGGTGAGGCAACGCTCGTGATCCAGCTCCGTCTTTCCCGCCGCAGGCA
GAGCTGGGCGGGGGCCCAGGCGTTCAGGATCTGCCTGGCTAACCTGGCGG
ACCCGTCCGCGGAAGAATTAGTGGTAAACGTAATCGCTCGCGTTGTGACC
CAGCTGGTGAGAATGGTGGGGCTCGACGAGCCACCTCCCAGCCCCATCTC
GCACCGCGTGTACAGCCCCGGGACTCCAACCGCGCCCTCCTCCTACATGG
GTTCGTCGTCGTCGTCCATCTGGCGAAGGGCAAGATCTTCCTCCATCGAG
GCGTTCGGGTCCTTCGGCGCCTCCGAGGGAGGGTCCCTGAGGCTTGCGCC
GCTCGCCATCCCGCCTCTGCGCGGCGCCGCCGGCCGCTGCGCCAAGTCTT
TCCAGGTGAAGAACGTGTCGGGCGACACGGTGTCGGTCACGCTGAGGGTT
ACCCCGACGCCGGAGGTAGCCGAGGTGCTCTCGTTCGGCGCATCTCTGCA
GCAGCAGGACTCGTCCACTGGCGTGTACGCGACGGCCGGGGCAGACGGGC
GGCCGTCC
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