mRNA_P-littoralis_Contig90.123.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.123.1
Unique NamemRNA_P-littoralis_Contig90.123.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.100e-25
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDGGMKDMVSKLFEVLVSPTVPRSTREPGLAAGGGN 222
            VTLYFNRSRVGVFST+MVV+NL NPAD KVVRVEMEVV+GG KDMV +LFEVLVSP VP STRE   A+G  N
Sbjct: 2707 VTLYFNRSRVGVFSTFMVVDNLTNPADIKVVRVEMEVVEGGPKDMVPQLFEVLVSPAVPASTRELSTASGSSN 2779          
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.760e-12
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDGGMK-DMVSKLFEVLVSP-TVPRSTREPGL 204
            VTLY NR+R+GVFSTYMV+EN  NPAD K VRVEMEVV    +   +++LF+VLVSP T   + +E GL
Sbjct: 1721 VTLYLNRTRMGVFSTYMVMENARNPADLKFVRVEMEVVQQTHEGQQLARLFQVLVSPFTTGAAQQEQGL 1789          
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: A0A6A3ERD9_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3ERD9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-6
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDG-----GMK---DMVSKLFEVLVS 168
            V LYF R  VGV+ST+MV++NLANP+D KV+ V +EV+       GM    D  S LF VLVS
Sbjct:  642 VVLYFLRGVVGVYSTFMVLQNLANPSDLKVIHVRLEVIADLNSLRGMSSGLDSTSNLFRVLVS 704          
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: A0A8J5MJ44_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MJ44_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.260e-6
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDG-----GMK---DMVSKLFEVLVS-----PTVPRSTRE--PGLAAGG 216
            V LYF R  VGV+ST+MV++NLANP+D KV+ V +EV+       GM    D  + LF VLVS       + RS+ E  P ++AGG
Sbjct: 1496 VVLYFLRGVVGVYSTFMVLQNLANPSDLKVIHVRLEVIADLNSLRGMSSGLDAATNLFRVLVSNHGSPKRLRRSSIEMPPEISAGG 1581          
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: G4YG66_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YG66_PHYSP)

HSP 1 Score: 54.7 bits (130), Expect = 2.280e-6
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDG-----GMK---DMVSKLFEVLVS 168
            V LYF R  VGV+ST+MV++NLANP+D KV+ + +EV+       GM    D  S LF VLVS
Sbjct: 2984 VVLYFLRGVVGVYSTFMVLQNLANPSDLKVIHIRLEVIADLNSLRGMSSGLDPTSNLFRVLVS 3046          
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: A0A7S2F8R5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8R5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.590e-6
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDGGMKDMVSKLFEVLVS 168
            + L F+R+ +G+FS+Y+++ENL+NP D KVVRV ME+    + +  ++LF V VS
Sbjct:   24 IMLKFSRADIGMFSSYLILENLSNPLDMKVVRVTMEIASLPISEGGNQLFNVQVS 78          
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: D0MXX4_PHYIT (Uncharacterized protein n=31 Tax=Phytophthora TaxID=4783 RepID=D0MXX4_PHYIT)

HSP 1 Score: 53.9 bits (128), Expect = 4.250e-6
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDG-----GMK---DMVSKLFEVLVS 168
            V LYF R  VGV+ST+MV++NLANP+D KV+ V +EV+       GM    D  + LF VLVS
Sbjct: 2994 VVLYFLRGVVGVYSTFMVLQNLANPSDLKVIHVRLEVIADLNSLRGMSSGLDPATNLFRVLVS 3056          
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: A0A225WZ12_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZ12_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.250e-6
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDG-----GMK---DMVSKLFEVLVS 168
            V LYF R  VGV+ST+MV++NLANP+D KV+ V +EV+       GM    D  + LF VLVS
Sbjct: 2996 VVLYFLRGVVGVYSTFMVLQNLANPSDLKVIHVRLEVIADLNSLRGMSSGLDPTANLFRVLVS 3058          
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: A0A833WNJ4_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WNJ4_PHYIN)

HSP 1 Score: 53.9 bits (128), Expect = 4.260e-6
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDG-----GMK---DMVSKLFEVLVS 168
            V LYF R  VGV+ST+MV++NLANP+D KV+ V +EV+       GM    D  + LF VLVS
Sbjct: 3226 VVLYFLRGVVGVYSTFMVLQNLANPSDLKVIHVRLEVIADLNSLRGMSSGLDPATNLFRVLVS 3288          
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Match: A0A662WL85_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WL85_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.770e-6
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    4 VTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDG-----GMK---DMVSKLFEVLVS----PTVPR--STREP-GLAAGGGNG 225
            V LYF R  VGV+S++MV++N+ NP+D KV+ V +EV+       GM    D  + LF VLVS    P  PR  S   P G+A GG  G
Sbjct: 1951 VVLYFLRDVVGVYSSFMVLQNMTNPSDLKVIHVRLEVIADLNSLRGMSTGLDPATNLFRVLVSSHSNPKRPRRSSVEAPSGIAPGGNQG 2039          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE1.100e-2578.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYQ9_9STRA4.760e-1259.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A3ERD9_9STRA1.190e-652.38Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A8J5MJ44_9STRA2.260e-645.35Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G4YG66_PHYSP2.280e-650.79Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A7S2F8R5_9STRA2.590e-645.45Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
D0MXX4_PHYIT4.250e-650.79Uncharacterized protein n=31 Tax=Phytophthora TaxI... [more]
A0A225WZ12_9STRA4.250e-650.79Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A833WNJ4_PHYIN4.260e-650.79Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A662WL85_9STRA5.770e-643.82Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:471183..472240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI49018
Model size319
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.74e-07
EggNOG OGs28MMI@1|root,2QU5A@2759|Eukaryota,3Q7D3@4776|Peronosporales
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791807.1167965-CDS-P-littoralis_Contig90:471182..4714101680791807.1167965-CDS-P-littoralis_Contig90:471182..471410Pylaiella littoralis U1_48CDSP-littoralis_Contig90 471183..471410 -
1680791807.1308007-CDS-P-littoralis_Contig90:472150..4722401680791807.1308007-CDS-P-littoralis_Contig90:472150..472240Pylaiella littoralis U1_48CDSP-littoralis_Contig90 472151..472240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.123.1prot_P-littoralis_Contig90.123.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 471183..472240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.123.1

>prot_P-littoralis_Contig90.123.1 ID=prot_P-littoralis_Contig90.123.1|Name=mRNA_P-littoralis_Contig90.123.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
VVTLYFNRSRVGVFSTYMVVENLANPADFKVVRVEMEVVDGGMKDMVSKL
FEVLVSPTVPRSTREPGLAAGGGNGSSGGNSGNSGGGGVGSGTSTGKGVV
AASDGG
back to top

mRNA from alignment at P-littoralis_Contig90:471183..472240-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.123.1 ID=mRNA_P-littoralis_Contig90.123.1|Name=mRNA_P-littoralis_Contig90.123.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-littoralis_Contig90:471183..472240- (Pylaiella littoralis U1_48)
GTTGTTACTCTCTATTTCAACCGCAGCCGTGTCGGCGTTTTCTCGACGTA CATGGTTGTCGAAAACCTCGCCAACCCCGCCGACTTCAAGGTGAGATTAT TTTTTCGTCTTGACTGACTTAACTTTCTCCGGGCACCTGAACCTCTCGTA GCCTCGTCCGGTACGTATGATAGCCCTTTCAAGTGTTGATTCCGCCCCTT TTTGACTCTCAAGATGCCGGTACGCAGGCATTCCTTGTGCTTTTCGTCCC GTTGGTGACGCGGTTTTCTCAAACATGGGACCCGTGCGCGTAATTGTTTG TTCTACCCGCATTCGAGCCTCCCGGTTGCCCAAAAGACCTGGCACACTTT TTGAAATCAAAATTATTTCCTAATACTTCGAAGTATGACATGTGTGCAAC TTCTCCCGTGCCTCGATGGCTTGGCTTTGAGAAATCGGACCGCGCACATG CACGCAGCATCATCGTCTCTTCTGTCGGCGTGGGATGAGTTAGGGCCCGG TATGTGTGTGTGTGACCGCCCCCAACCAAGCACCATGACTTGGATCGACG CTTGGAAGTGGTCAACACGAACGGTGGCTACACCCACCATACATCATTGT CGATCAAAGAGTGTGTGTGACCGCCCTTATCAATCCAAGCACCATGAAGC GATACGTGAGTGGTCAACACGATGAGTTTACGCTCCCCCTGTACGCCATT GTCAATCTCAGGCTATTCGTGCCCCCCCCCCCCTCAAACACGATGACTTT GACGCTCGAAGTGGTGAACCCGAATGGCAAACTCGCCCCCCGCCCCCCCC GCCCCCGTCGACATCTCATTGCCAAAAAAGGTGGTGCGAGTTGAGATGGA AGTCGTCGACGGCGGAATGAAGGACATGGTGTCGAAGCTTTTCGAAGTGC TCGTGTCCCCCACAGTGCCTAGGTCGACGCGAGAGCCCGGCTTGGCGGCC GGTGGCGGCAACGGCAGCAGCGGCGGTAACAGCGGCAACAGTGGCGGCGG TGGCGTTGGTAGCGGCACCAGCACTGGGAAAGGCGTGGTTGCTGCGAGCG ACGGGGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig90:471183..472240-

>mRNA_P-littoralis_Contig90.123.1 ID=mRNA_P-littoralis_Contig90.123.1|Name=mRNA_P-littoralis_Contig90.123.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig90:471183..472240- (Pylaiella littoralis U1_48)
GTTGTTACTCTCTATTTCAACCGCAGCCGTGTCGGCGTTTTCTCGACGTA
CATGGTTGTCGAAAACCTCGCCAACCCCGCCGACTTCAAGGTGGTGCGAG
TTGAGATGGAAGTCGTCGACGGCGGAATGAAGGACATGGTGTCGAAGCTT
TTCGAAGTGCTCGTGTCCCCCACAGTGCCTAGGTCGACGCGAGAGCCCGG
CTTGGCGGCCGGTGGCGGCAACGGCAGCAGCGGCGGTAACAGCGGCAACA
GTGGCGGCGGTGGCGTTGGTAGCGGCACCAGCACTGGGAAAGGCGTGGTT
GCTGCGAGCGACGGGGGT
back to top