mRNA_P-littoralis_Contig90.83.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig90.83.3
Unique NamemRNA_P-littoralis_Contig90.83.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig90.83.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig90contigP-littoralis_Contig90:369381..373953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3493
Hectar predicted targeting categoryother localisation
Exons4
Cds size2004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig90.83.3prot_P-littoralis_Contig90.83.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig90 370869..373952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791801.204898-UTR-P-littoralis_Contig90:369380..3708681680791801.204898-UTR-P-littoralis_Contig90:369380..370868Pylaiella littoralis U1_48UTRP-littoralis_Contig90 369381..370868 -
1680791801.26831-UTR-P-littoralis_Contig90:373952..3739531680791801.26831-UTR-P-littoralis_Contig90:373952..373953Pylaiella littoralis U1_48UTRP-littoralis_Contig90 373953..373953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791801.2196252-CDS-P-littoralis_Contig90:370868..3709391680791801.2196252-CDS-P-littoralis_Contig90:370868..370939Pylaiella littoralis U1_48CDSP-littoralis_Contig90 370869..370939 -
1680791801.230575-CDS-P-littoralis_Contig90:371599..3731361680791801.230575-CDS-P-littoralis_Contig90:371599..373136Pylaiella littoralis U1_48CDSP-littoralis_Contig90 371600..373136 -
1680791801.2429159-CDS-P-littoralis_Contig90:373214..3732671680791801.2429159-CDS-P-littoralis_Contig90:373214..373267Pylaiella littoralis U1_48CDSP-littoralis_Contig90 373215..373267 -
1680791801.2571008-CDS-P-littoralis_Contig90:373609..3739521680791801.2571008-CDS-P-littoralis_Contig90:373609..373952Pylaiella littoralis U1_48CDSP-littoralis_Contig90 373610..373952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig90.83.3

>prot_P-littoralis_Contig90.83.3 ID=prot_P-littoralis_Contig90.83.3|Name=mRNA_P-littoralis_Contig90.83.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=668bp
MASDGVRYELSRCHRRGQTWDRQRRRVKKKRKEEEVAPTTSRDPQANLII
RFVPAGRMPCNHVGCTKQPIYVVAGSQTGKQFFCSAHAGDGTVNVINKKC
THHGCTKRPSHGVAGTKTAEFCCGHAKDGMVDFCCRHAKDGMVDVLRKKC
THRGCTKQPKHGVAGTKTAEFCCGHAKDGMVDVLSKKCTHHGCTKRPNYG
VAGTKTAEFCCGHAKDGMVDVVNKKCAHHGCTKRPNYGVAGTKTAEFCCV
HAKDGMMDVVNKKCTHRGCIKHPRYGVAGTKTAEYCCTHAKDGMVDVLSK
KCTHRGCTKRASHGVAGTKTAEFCCGHAKDGMVDVFNKKCTHHGCAKRAS
YGVAGTKTAEFCCGHAKDGMVDVINKKCTHRGCTKLPSHGVAGTKTAEFC
CVHAKDGMVDVLNKKCAHRGCTKRPRYGVAGTKTAEFCCVHAKDGMVDVV
NKKCAHRGCTKQPRYGAAGGTRTICARHAEEDMVHPYTPKVAAGVHRGSG
GVQGCGGAGPDGGTVRSAGGGGASASGKRKYRLLSSSQTRTSAAKSRADS
KRICPAHISTDVTPGPIKTAVDDDSMSEPKDAAVKTEEVAVSSTMANPKG
AFPVEADAGEWVILVEDHGWCADPESAVKTEVRIAFPSKKPAAEGQLKGR
GEREPNERETRRARFHA*
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mRNA from alignment at P-littoralis_Contig90:369381..373953-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig90.83.3 ID=mRNA_P-littoralis_Contig90.83.3|Name=mRNA_P-littoralis_Contig90.83.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4573bp|location=Sequence derived from alignment at P-littoralis_Contig90:369381..373953- (Pylaiella littoralis U1_48)
AATGGCTTCGGATGGAGTCAGATACGAGCTGTCACGCTGTCACCGGAGGG
GCCAGACCTGGGATAGACAACGCAGACGTGTAAAGAAAAAGAGGAAGGAA
GAGGAGGTTGCCCCCACCACCTCGCGGGACCCTCAGGCCAACCTTATTAT
CCGCTTTGTTCCAGCGGGCAGGATGCCGTGCAACCATGTTGGTTGCACCA
AGCAGCCGATCTATGTTGTGGCAGGTAGCCAGACTGGGAAGCAGTTCTTC
TGCTCTGCACACGCCGGAGACGGGACGGTGAACGTCATCAACAAGAAGTG
CACCCACCATGGCTGCACCAAGCGGCCGAGCCATGGCGTGGCAGGTACCA
CGATGGCGGAGTTCTGCTCTGCACATGCCGGGGACGGGATGGTGGACGTC
CTCAGGAAGAAGTGCACCCACCGTGGCTGCACCAAGCGGCCGAACTATGG
CGTGACAGGCACCAAGACGGCGGAGTTCTGCTTTGGGCACGGCAAGAACG
GGATGGTGGACGTCCTCAGCAAGAAGTGCACCCACCGTGGCTGCACCAAG
CGGCCGAGCTATGGCGTGGCAGGTACCGAGACGGCGGAGTTCTGCTGTAG
ACACGCCAAGGACGGGATGGTGGACGTCGTCGGCAAGCGGTGCACCCACC
GTGGCTGCACCAAGCAGCCGAGCTATGGCGTGGCAGGTACCAAGACGGCG
GAGTTCTGTTGTGGACACGCCAAGGACGGGATGGTGGACGTCGTCAGCAA
GAAGTGCGCCCACCGTGGCTGCACCAAGCGGCCGAGCTATGGCGTGGCAG
GTACCGAGACGGCGGAGTTCTGCTGTAGACACGCCAAGGACGGGATGGTG
GACGTCCTCAGGAAGAAGTGCACCCACCGTGGCTGCACCAAGCAGCCGAA
GCATGGCGTGGCAGGTACCAAGACGGCGGAGTTCTGCTGTGGACACGCCA
AGGACGGGATGGTGGACGTCCTCAGCAAGAAGTGCACCCACCATGGCTGC
ACCAAGCGGCCGAACTATGGCGTGGCAGGTACCAAGACGGCGGAGTTCTG
CTGTGGACACGCCAAGGACGGGATGGTGGACGTCGTCAACAAGAAGTGCG
CCCACCATGGCTGCACCAAGCGGCCGAACTATGGCGTGGCAGGTACCAAG
ACGGCGGAGTTCTGCTGTGTACACGCCAAGGACGGGATGATGGACGTCGT
CAACAAGAAGTGCACCCACCGTGGCTGTATCAAGCATCCGAGATATGGCG
TGGCGGGTACCAAGACGGCGGAGTACTGCTGTACACACGCCAAGGACGGG
ATGGTGGACGTCCTCAGCAAGAAGTGCACCCACCGTGGCTGCACCAAGCG
GGCGAGCCATGGCGTGGCAGGTACCAAGACGGCGGAGTTCTGCTGTGGAC
ACGCCAAAGACGGTATGGTGGACGTCTTCAACAAGAAGTGCACCCACCAT
GGCTGCGCCAAGCGGGCGAGCTATGGCGTGGCGGGTACCAAGACGGCGGA
GTTCTGTTGTGGACACGCCAAGGATGGCATGGTGGACGTCATCAACAAGA
AGTGCACCCACCGTGGTTGCACCAAGCTGCCGAGCCATGGTGTGGCAGGT
ACCAAGACGGCGGAGTTCTGCTGTGTACACGCCAAGGACGGGATGGTGGA
CGTCCTCAACAAGAAGTGCGCCCACCGTGGTTGCACCAAGCGGCCGAGGT
ACGGCGTGGCAGGTACCAAGACGGCGGAGTTCTGCTGTGTACACGCCAAG
GACGGGATGGTGGACGTCGTCAACAAGAAGTGCGCCCACCGTGGTTGCAC
CAAGCAGCCGAGATATGGCGCGGCCGGCGGCACCCGAACGATTTGCGCTC
GACATGCTGAAGAAGACATGGTGCATCCCTACACTCCCAAGGTAGCAGCT
GGTGTCCACAGGGGAAGCGGCGGCGTGCAAGGGTGTGGCGGTGCAGGACC
GGATGGGGGCACTGTCCGTAGTGCTGGCGGTGGCGGTGCCAGTGCCAGTG
GAAAGAGGAAATACCGCCTTCTCTCATCTAGCCAGACGAGGACATCCGCC
GCCAAGAGTAGGGCAGACAGCAAGCGAATCTGCCCAGCGCACATCAGCAC
AGATGTGACTCCAGGCCCAATCAAAACAGCTGTAGATGACGATTCGATGT
CGGAGCCTAAAGACGCTGCGGTCAAGACAGAAGAGGTGGCGGTCTCGTCT
ACCATGGCAAATCCCAAGGGAGCTTTCCCAGTTGAAGCAGATGCAGGAGA
ATGGGTCATCCTCGTGGAAGATCATGGTTGGTGTGCTGACCCAGAATCTG
CGGTGAAGACGGAAGTGCGGATCGCGTTCCCATCGAAAAAGCCGGCCGCT
GAGGGTGAGCTGTAAACACCCAATACTGCCCTGCAGCAACCAAGTTCAAC
ATGTCACGCCTGTCTTCCCATTAGGCCCGCGTCACTGGTGTATTTGTCCT
CATGTCGAACAAAATGGAAACGGGGCAGTTCGTTGCTTTCTCTGTGGCGG
TTTGCACGGTGAAGCAGCATTTTACACCTCTGTAAGCACAACGCATATGC
GTCTCATTGCTGCAGTTAGGGAAGCTTTGAGAAGCCCGACCGACGACGTG
TGTTGCCTTCAATAGCCTGGGACGATGTTGCGAAACTCGTACAAGTATTT
TTACATGCGGCCATTCTCTATTGATTTCTCGCTGGGTTCTCACTGTCTTA
TTTCGGGTTGTCCATATCGTCTGGTACTTGTTTTTTGCGCGTGAGGAATC
TCTCACGCATCTCTCTCAAGGCTGTTTGTACTATACAATCTCGTGGACTG
TGTTTTTTTTGCTGCTCACACTCTCCGGCTGTCTTAGGCTCGACGCATGT
GGCTGGTTTACAGCACCAATCAATGGCAGCACGTACCGTCGTGACAATAT
GGAAAGCGGTGCACGACCGGCGTTCTGCAGCTTGCCGTGCCTGTTGGGCA
CCACCGCCGTTTCTTGAAGCTCCTGCCACTGGTCGTTGATGCATGAACTC
TTTTCTTGAAACAGGTCAGCTAAAGGGCAGGGGGGAGCGAGAGCCGAACG
AGAGAGAGACGCGGAGAGCACGGTTTCACGCTTGAGAGGGGTGGAGACCG
CTACGGGAACACACCTTTAATATCGTGGGCGGTGTTTGGAGGCCGGGCGA
TCGTCAGCCTCGGTGTCCGTGGATTTGACCTCTGGCGTGCGTTCGTGGCG
CCATCAAACGAAGTCGAGCCATCATCGGCACTGTTTGAGCTTTTTTTATA
GGAACGGGGAAAAATCTTCGGGATTGTTTGATTTCCTCCACAGTATGCGT
ATTTTCACTGGTTCATGTCGCAAATTTTGATTCTGAACCGTGGTTTTTCG
TATGATAAGATGCACACGAAATTTATGGTTGAGTGCGACTCATCTGAGGT
TTTATAGGAGACAAGTAAACGTACGTGAACTAAAGCCACACGCTGGTGAG
TGTTGCTGCTGTCGACGAAGGGCAGGAGGCAGGCCGAGTAGCGAGGCATG
CACCTGATCGACTTGTGAAGGGTGGCGATCTTCAGAGAGCAAAACAGGGC
TGTGAGTGGACGTTTGGCTGATTCCTCTTTGTCACCCCGGTCCTCTTTAG
GTTTTGCCTTGTCCTTGGCCGTCTTGTTCTCGTCCGATTCTAGTATCACC
CTGCTGGTATATAGGGAATGGTCTTTGGTTAATGTTGCATTAACACAAGA
GTTGACGAATGAATGTATCACACACCTTGTAGAGGTGGCGAGAGTGAGCT
TCTTTGGCGGAAACCCGACAATGAACACACCACGGCCGTGCAGGGTCCAG
ACGAAAGTTCCCATGAGGCTCCCTCCTTTTTTATTTAGCGTGTGCTTTTT
TTTGTCTGATTTTTTTTTGTTGTCGGTCTCCGAAACTGTAGTGATGGGTC
CAATTTGTATTTTGTCTATGTTGTCGCGCTGCTTCAGCACCGTTTCGGGG
TCTCTAATGTCGTTCATTTTCGAGATCGAATTCGTGTGTGTGGATAATAT
GGATTCGCACCTTCCTGTAGCGAGTAGAGGCCTTCCATATGTGGTTATTT
TTGTTTTTTTGCCACACTTCTGCACCTCTGCAAGGTAGTCGTGAGTTCGT
CTCTTTCGTTGTTGAACTTGAACTTGAACGGACTAAAGACTTTATTTAGA
CGAACATCGGACCAGTGCGATGATTGAGTCAGCCATAGATTTCCAGGAGA
GGGGGGATAAGAAAGCTTGTTACGGGGTGCAATGATAGTCTAAATACATT
TATTCCGTAACTGGATCGCTCGATTCCCCCATTTCGTAAGTTCTCTTACT
GTAGTGAAAGGAATTCACAGCAGCAGTAGCAGGGGGCTCGGGGAGGGAAA
TGAGGGATGTTGAGGCCCTCTTCGTGGAAACAGGATTTATCCGCGATCTA
TCGATCATACCCTTCTCTGGGTCTATGCTATGTTAGGTTTTGTCGCCAAC
GAGGTAGTGTACGGTACACCACAGCTTTTCCGAAAAAATACATTTTAATT
TTGTGTTGTCATGGAAGTTCTTGCAATCCCAGCGATCCCATTGGATGGTG
GAAACAACGAAAACCGTTTAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig90:369381..373953-

>mRNA_P-littoralis_Contig90.83.3 ID=mRNA_P-littoralis_Contig90.83.3|Name=mRNA_P-littoralis_Contig90.83.3|organism=Pylaiella littoralis U1_48|type=CDS|length=2004bp|location=Sequence derived from alignment at P-littoralis_Contig90:369381..373953- (Pylaiella littoralis U1_48)
ATGGCTTCGGATGGAGTCAGATACGAGCTGTCACGCTGTCACCGGAGGGG
CCAGACCTGGGATAGACAACGCAGACGTGTAAAGAAAAAGAGGAAGGAAG
AGGAGGTTGCCCCCACCACCTCGCGGGACCCTCAGGCCAACCTTATTATC
CGCTTTGTTCCAGCGGGCAGGATGCCGTGCAACCATGTTGGTTGCACCAA
GCAGCCGATCTATGTTGTGGCAGGTAGCCAGACTGGGAAGCAGTTCTTCT
GCTCTGCACACGCCGGAGACGGGACGGTGAACGTCATCAACAAGAAGTGC
ACCCACCATGGCTGCACCAAGCGGCCGAGCCATGGCGTGGCAGGTACCAA
GACGGCGGAGTTCTGTTGTGGACACGCCAAGGACGGGATGGTGGACTTCT
GCTGTAGACACGCCAAGGACGGGATGGTGGACGTCCTCAGGAAGAAGTGC
ACCCACCGTGGCTGCACCAAGCAGCCGAAGCATGGCGTGGCAGGTACCAA
GACGGCGGAGTTCTGCTGTGGACACGCCAAGGACGGGATGGTGGACGTCC
TCAGCAAGAAGTGCACCCACCATGGCTGCACCAAGCGGCCGAACTATGGC
GTGGCAGGTACCAAGACGGCGGAGTTCTGCTGTGGACACGCCAAGGACGG
GATGGTGGACGTCGTCAACAAGAAGTGCGCCCACCATGGCTGCACCAAGC
GGCCGAACTATGGCGTGGCAGGTACCAAGACGGCGGAGTTCTGCTGTGTA
CACGCCAAGGACGGGATGATGGACGTCGTCAACAAGAAGTGCACCCACCG
TGGCTGTATCAAGCATCCGAGATATGGCGTGGCGGGTACCAAGACGGCGG
AGTACTGCTGTACACACGCCAAGGACGGGATGGTGGACGTCCTCAGCAAG
AAGTGCACCCACCGTGGCTGCACCAAGCGGGCGAGCCATGGCGTGGCAGG
TACCAAGACGGCGGAGTTCTGCTGTGGACACGCCAAAGACGGTATGGTGG
ACGTCTTCAACAAGAAGTGCACCCACCATGGCTGCGCCAAGCGGGCGAGC
TATGGCGTGGCGGGTACCAAGACGGCGGAGTTCTGTTGTGGACACGCCAA
GGATGGCATGGTGGACGTCATCAACAAGAAGTGCACCCACCGTGGTTGCA
CCAAGCTGCCGAGCCATGGTGTGGCAGGTACCAAGACGGCGGAGTTCTGC
TGTGTACACGCCAAGGACGGGATGGTGGACGTCCTCAACAAGAAGTGCGC
CCACCGTGGTTGCACCAAGCGGCCGAGGTACGGCGTGGCAGGTACCAAGA
CGGCGGAGTTCTGCTGTGTACACGCCAAGGACGGGATGGTGGACGTCGTC
AACAAGAAGTGCGCCCACCGTGGTTGCACCAAGCAGCCGAGATATGGCGC
GGCCGGCGGCACCCGAACGATTTGCGCTCGACATGCTGAAGAAGACATGG
TGCATCCCTACACTCCCAAGGTAGCAGCTGGTGTCCACAGGGGAAGCGGC
GGCGTGCAAGGGTGTGGCGGTGCAGGACCGGATGGGGGCACTGTCCGTAG
TGCTGGCGGTGGCGGTGCCAGTGCCAGTGGAAAGAGGAAATACCGCCTTC
TCTCATCTAGCCAGACGAGGACATCCGCCGCCAAGAGTAGGGCAGACAGC
AAGCGAATCTGCCCAGCGCACATCAGCACAGATGTGACTCCAGGCCCAAT
CAAAACAGCTGTAGATGACGATTCGATGTCGGAGCCTAAAGACGCTGCGG
TCAAGACAGAAGAGGTGGCGGTCTCGTCTACCATGGCAAATCCCAAGGGA
GCTTTCCCAGTTGAAGCAGATGCAGGAGAATGGGTCATCCTCGTGGAAGA
TCATGGTTGGTGTGCTGACCCAGAATCTGCGGTGAAGACGGAAGTGCGGA
TCGCGTTCCCATCGAAAAAGCCGGCCGCTGAGGGTCAGCTAAAGGGCAGG
GGGGAGCGAGAGCCGAACGAGAGAGAGACGCGGAGAGCACGGTTTCACGC
TTGA
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