mRNA_P-littoralis_Contig121.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.73.1
Unique NamemRNA_P-littoralis_Contig121.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig121.73.1 vs. uniprot
Match: A0A6H5JY04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY04_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.550e-35
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 2 
Query:  155 DLSKAQEDCKRLEREVLELRRDLEVSLKEAKQSAEEANMANFQNQLLIDMLAVARVDEGMFKIRLGQESARHAELSRSLEQAYIKILAAGLDPGVSEA 448
            +L+ AQ +CKRLE+EV+ LRRDLE   K+AK+ AE+ NMA FQNQLLIDMLAVAR D+G+F+ +L QESARHA LSRSLEQAY K+LAAGLDPGVS+A
Sbjct:   88 ELATAQGECKRLEKEVMGLRRDLENCRKDAKRLAEQENMATFQNQLLIDMLAVARADQGIFRTKLEQESARHAVLSRSLEQAYTKLLAAGLDPGVSDA 185
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BLAST of mRNA_P-littoralis_Contig121.73.1 vs. uniprot
Match: A0A7S2V5X1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5X1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.190e-5
Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:  176 DCKRLEREVLELRRDLEV-------SLKEAKQSAEEANMANFQNQLLIDMLAVARVDEGMFKIRLGQESARHAELSRSLEQAYIKILAAGLDP 433
            D KRLE E   L+  LE          ++  Q+ EE NMA FQNQLL++M+AVA+V+       L  E  R  E  R LE+ Y  I+ AGL P
Sbjct:   61 DTKRLEAENESLKLQLEKLKQLCLQGEEDLNQAVEEKNMAVFQNQLLVEMVAVAKVELKTAGEDLEVERRRTLEYRRELERCYQVIVDAGLQP 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JY04_9PHAE1.550e-3571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V5X1_9STRA5.190e-541.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:301676..303388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size451
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_004460.1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789518.603061-CDS-P-littoralis_Contig121:301675..3018211680789518.603061-CDS-P-littoralis_Contig121:301675..301821Pylaiella littoralis U1_48CDSP-littoralis_Contig121 301676..301821 -
1680789518.6148114-CDS-P-littoralis_Contig121:302261..3024191680789518.6148114-CDS-P-littoralis_Contig121:302261..302419Pylaiella littoralis U1_48CDSP-littoralis_Contig121 302262..302419 -
1680789518.6278334-CDS-P-littoralis_Contig121:302878..3029591680789518.6278334-CDS-P-littoralis_Contig121:302878..302959Pylaiella littoralis U1_48CDSP-littoralis_Contig121 302879..302959 -
1680789518.638334-CDS-P-littoralis_Contig121:303323..3033881680789518.638334-CDS-P-littoralis_Contig121:303323..303388Pylaiella littoralis U1_48CDSP-littoralis_Contig121 303324..303388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.73.1prot_P-littoralis_Contig121.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 301676..303388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.73.1

>prot_P-littoralis_Contig121.73.1 ID=prot_P-littoralis_Contig121.73.1|Name=mRNA_P-littoralis_Contig121.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=150bp
MTLRFSALGFGTSAQSPRAPKSKKEPLPVEIQLGSNAVKLTPEGWKLGKL
SRSFQGSRRLQAVGTRSARAPARSRGLPERSKAVGRGGKHGQLSKPTPDR
HARCGTRGRGNVQDQTRTGERSARGALTKSRASLHKNPCGRARSRSVRSA
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mRNA from alignment at P-littoralis_Contig121:301676..303388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.73.1 ID=mRNA_P-littoralis_Contig121.73.1|Name=mRNA_P-littoralis_Contig121.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1713bp|location=Sequence derived from alignment at P-littoralis_Contig121:301676..303388- (Pylaiella littoralis U1_48)
ATGACGCTACGATTCTCTGCGTTGGGATTCGGCACCAGTGCGCAATCACC
ACGGGCACCGAAATCGTGAGACGCCGTTGGTGTGTAAGTTTTTGAAGAAG
ATCCGGCGATGTGCACTCTTTTTGCGGTTGATATATACGAAGTACTCCGA
AGTACAAGCATAAGGAGTATAGGAACAGCATAGAACGCACCGTCGAAGGG
GAATAGAAAGAAAGGCGCTGATTTGCGCCTCCGTAGTGGATTTTCTATAC
GCTGTAAACTTCTAGACACGTACTGAGCTGTATATATCATCATACAGTAA
TGCAATCTTACAGACAGTTGTCCCGAACAGACATCCTTCATTCCCGCATT
TTCCCGCATGCTTATGACCTTCCGCTGTTGCAAGCCATAATGCCATCGCT
TTGCATGGGATGGTGTTGCACGCGTACAGGAAGAAGGAGCCTCTTCCGGT
TGAAATCCAACTTGGATCCAACGCAGTCAAGCTCACACCCGAGGGCTGGA
AACTCGGCAAGTGACATCGGCGGGGTGGTTTGTTGGGCTGAACGGGAGGG
ACGGCGGGGGGTCTGGGCGCGGTTAGGTTCCCACATCACACTCCCTCGAA
GGCGGTTCCTGAATTTGCAGGAATGCACGCTTCGTGCACTTCGTGCACTT
CGTGCACTTCGTGTTTTTCTCGACACCCTGCGGTATTAAGGGTTTCTTTA
CATAGCCGGTGCTTCACATGATTCCCTCGAGCTCGCGCGCTGTTTGGTGG
TTGTAGGCCCTGGAAATATGTTTTGCTCCTGCTCAAGGATCAACGCACCA
AACGAAGCTCTTCCCGTGTTTGAAGTACTGGATGTGGAAACCCCATCCAC
ATAAAACGTGCAGCAATACAATACAAATACTGTAGCACAGATGGTTGTGC
GACGAAGCAAACCCCTAAATATGATAACATGGAAAAACATGTGTGAAAAC
CGTAACATCTCCTCCCCAGATTGTCACGATCTTTCCAAGGCTCAAGAAGA
TTGCAAGCGGTTGGAACGAGAAGTGCTCGAGCTCCGGCGAGATCTAGAGG
TCTCCCTGAAAGAAGCAAAGCAGTCGGCAGAGGAGGCAAACATGGCCAAC
TTTCAAAACCAACTCCTGATCGACATGGTGAAGGCAGCGATTTCTTGGAA
TATGTGGTCAAACGCGCTCTTTGTCATATAAAGCGGTGATCTCTCGAATG
TAGAGTTTCACGTTCATGGCGGCGGGCGTTTATCAAACCCATCTGAGACA
AGCAGGAACGGTTTCTTGGGGCCTGCTGCGAACAAGAGATGATTTTCCCA
GCACTTTTTTCTGTTAATAATACTCGACGTGCTTTGTTGATGCCGTCAGG
CGTCGGTCTTCTTGAGCGATACCGATCACTTTTTGATTGATCCCATACGC
CACCTTCGATACTACTTGTAGAAGATTCTCCAGCACAAACCAACCCGACA
AACTCCAAAACTTCCATGCACGGCGTACCGGTAGGAGGTAAAGTTCTGCC
AAGACCTGGATTGAAAAGTATGTGGTATCCGTTTGTGTTGCTCTCAATTC
TGTTTTTGATTCATCAGCTCGCTGTGGCACGCGTGGACGAGGGAATGTTC
AAGATCAGACTCGGACAGGAGAGCGCTCGGCACGCGGAGCTCTCACGAAG
TCTAGAGCAAGCCTACATAAAAATCCTTGCGGCAGGGCTCGATCCAGGAG
TGTCCGAAGCGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig121:301676..303388-

>mRNA_P-littoralis_Contig121.73.1 ID=mRNA_P-littoralis_Contig121.73.1|Name=mRNA_P-littoralis_Contig121.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig121:301676..303388- (Pylaiella littoralis U1_48)
ATGACGCTACGATTCTCTGCGTTGGGATTCGGCACCAGTGCGCAATCACC
ACGGGCACCGAAATCGAAGAAGGAGCCTCTTCCGGTTGAAATCCAACTTG
GATCCAACGCAGTCAAGCTCACACCCGAGGGCTGGAAACTCGGCAAATTG
TCACGATCTTTCCAAGGCTCAAGAAGATTGCAAGCGGTTGGAACGAGAAG
TGCTCGAGCTCCGGCGAGATCTAGAGGTCTCCCTGAAAGAAGCAAAGCAG
TCGGCAGAGGAGGCAAACATGGCCAACTTTCAAAACCAACTCCTGATCGA
CATGCTCGCTGTGGCACGCGTGGACGAGGGAATGTTCAAGATCAGACTCG
GACAGGAGAGCGCTCGGCACGCGGAGCTCTCACGAAGTCTAGAGCAAGCC
TACATAAAAATCCTTGCGGCAGGGCTCGATCCAGGAGTGTCCGAAGCGCC
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