mRNA_P-littoralis_Contig894.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig894.11.1
Unique NamemRNA_P-littoralis_Contig894.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Match: A0A6H5K213_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K213_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 3.090e-54
Identity = 85/132 (64.39%), Postives = 97/132 (73.48%), Query Frame = 2
Query:   38 GDSCASPKLNEIDGVAANRWGWYMEAAFTSTEQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPADGYCFDDFHLHVGNEFPTNV--------AAPGQYTQAEYLDIGTFYIIVHVGETCTSC 409
            G SC SP LN I+GV ANRWGWY+E+ F ST+Q FTFDMYAGAGQN L++G  AGNV+V V  DGSS Y + PADGYCFDD H+HVGNE PT           APGQY+Q+  L +G FYIIVHVGETCT C
Sbjct:    6 GGSCLSPPLNGIEGVTANRWGWYLESTFDSTDQSFTFDMYAGAGQNDLSSGALAGNVVVNVIQDGSSDYTVHPADGYCFDDVHVHVGNELPTKTKKSVTTPTVAPGQYSQST-LGVGDFYIIVHVGETCTPC 136          
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Match: A0A285X5T6_9FLAO (Uncharacterized protein n=1 Tax=Salinimicrobium sediminis TaxID=1343891 RepID=A0A285X5T6_9FLAO)

HSP 1 Score: 64.3 bits (155), Expect = 3.360e-9
Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 2
Query:   20 GCEEVY--GDSCASPKLNEIDGVAANRWGWYME--AAFTSTEQ--VFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPADGYCFDDFHLHVGNEFPTNVAAPGQYTQAEYLDIGTF------YIIVHVGETC 400
            GCE  Y  GD     +LN +D    N WGW +E  AA  + E   V+    YAGAGQN ++ G  AG+V++T+   G+   ++   DG   +D H++VG+++P +  APGQ+   +  D+ +       Y+IVH  E C
Sbjct:  384 GCETAYMFGDV----ELNSLD-YPGNNWGWGLEITAADIAAEADGVWEIPFYAGAGQNDISKGWEAGHVVLTLE-GGNLEVDIVLNDGVTINDTHIYVGSDWPDS-RAPGQFDLDDDDDVYSVNGWDPVYVIVHA-EVC 514          
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Match: A0A1M7D0L9_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium saccharophilum TaxID=29534 RepID=A0A1M7D0L9_9FLAO)

HSP 1 Score: 58.9 bits (141), Expect = 2.120e-7
Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 2
Query:    5 CDTSFGCEEVYGDSCASPKLNEIDGVA-ANRWGWYMEAAFTST--EQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSS-SYEMDPAD-GYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
            CDT++    ++G+       N  +G+  + +WGW     F S      +T+++YAGAGQN ++ G  AG V  TVNV GS+ S  ++    G  F + H+++ +  PT  AAPGQY                 Y   G+F++IVH G  CT+
Sbjct:  197 CDTAY----MFGN-------NTFNGLGLSEKWGW---VTFYSNVVNGSYTYNLYAGAGQNDISKGYLAGTV--TVNVQGSNISITINATHPGTVFTETHVYLSDAIPTT-AAPGQYGNQHSLNNTTSDTYNLTYSGDGSFWLIVHAG-VCTT 330          
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Match: A0A238W7I4_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium sp. ov086 TaxID=1761785 RepID=A0A238W7I4_9FLAO)

HSP 1 Score: 58.9 bits (141), Expect = 2.120e-7
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 2
Query:    5 CDTSFGCEEVYGDSCASPKLNEIDGVAANRWGWYMEAAFTSTEQ--VFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSS-SYEMDPAD-GYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
            CDT++    +YG+       N + G++  +WGW   A F    Q   +T+++YAGAGQN ++ G  AG  IV V + G++ S E++  + G  F + H+++ +  PT  AAPGQ+                 Y   GTF++IVH G  CT+
Sbjct:  197 CDTAY----MYGNYT----FNSL-GIS-EKWGW---ATFYDNTQNGTYTYNLYAGAGQNDISKGYLAG--IVNVTIQGTNVSVEINATNPGTVFTETHVYLSDSPPTT-AAPGQFGNQHTLNNTTLDNYSLTYSGDGTFWLIVHAG-VCTT 330          
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Match: J1KVN6_9FLAO (Uncharacterized protein n=5 Tax=Flavobacterium TaxID=237 RepID=J1KVN6_9FLAO)

HSP 1 Score: 58.2 bits (139), Expect = 3.960e-7
Identity = 43/147 (29.25%), Postives = 68/147 (46.26%), Query Frame = 2
Query:    5 CDTSFGCEEVYGDSCASPKLNEIDGVAANRWGWYMEAAFTSTEQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPADGYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
            CDT++    ++G++      N +    + +WGW    +   T   +T+++YAGAGQN + NG  AG V V +              G  F + H+++ +  PT  AAPGQY                 Y   G+F++IVH G  CT+
Sbjct:  197 CDTAY----MFGNNT----FNSLQ--LSEKWGWVTSYS-NVTNGTYTYNLYAGAGQNNINNGYLAGTVTVVIQGSNVQVTLNATHSGTVFTESHVYLSDSPPTT-AAPGQYGNQHTLNNTTTDTYNLTYSGDGSFWLIVHAG-VCTT 330          
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Match: A0A0D0LDB1_9FLAO (Uncharacterized protein n=2 Tax=Flavobacterium TaxID=237 RepID=A0A0D0LDB1_9FLAO)

HSP 1 Score: 57.0 bits (136), Expect = 1.000e-6
Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 2
Query:    5 CDTSFGCEEVYGDSCASPKLNEIDGVAANRWGWYMEAAFTSTEQ-VFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPAD-GYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
            CDT++    +YG+       N +    + +WGW     + +T+  ++T+++YAGAGQN +  G  AG V VT+    +   E++  + G  F + H+++ +  PT  AAPGQ+                 Y   GTF++IVH G  CT+
Sbjct:  196 CDTAY----MYGNYT----FNALQ--ISEKWGW--ANYYDNTQNGIYTYNLYAGAGQNDITKGYLAGTVTVTIQ-GANIGIEINATNPGTVFTETHVYLSDSPPTT-AAPGQFGNQHTLNNTMLDNYNLTYSGDGTFWLIVHAG-VCTT 329          
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Match: A0A6V6Z5T5_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium chungangense TaxID=554283 RepID=A0A6V6Z5T5_9FLAO)

HSP 1 Score: 54.3 bits (129), Expect = 8.830e-6
Identity = 43/149 (28.86%), Postives = 67/149 (44.97%), Query Frame = 2
Query:    5 CDTSFGCEEVYGDSCASPKLNEIDGVAANRWGW--YMEAAFTSTEQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSSSYEMDPADGYCFDDFHLHVGNEFPTNVAAPGQYTQAE-------------YLDIGTFYIIVHVGETCTS 406
            CDT++    ++G+       N ++   + +WGW  Y       T   +T+++YAGAGQN +  G  AG V + +     S        G  F + H+++ +  PT  AAPGQ+                 Y   G F+IIVH G  CT+
Sbjct:  197 CDTAY----MFGNYT----FNSLE--ISEKWGWATYYNNVMNGT---YTYNLYAGAGQNDITKGYLAGTVTIVIQGSNVSVTINATHPGTVFTETHVYLSDSPPTT-AAPGQFGNQHTLSNTTTDNYNLSYSGDGNFWIIVHAG-VCTT 330          
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Match: UPI001BBB83C1 (Uncharacterized protein n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=UPI001BBB83C1)

HSP 1 Score: 53.5 bits (127), Expect = 1.370e-5
Identity = 41/113 (36.28%), Postives = 57/113 (50.44%), Query Frame = 2
Query:   35 YGDSCASPKLNEIDGVAANR-WGWYMEAAFTSTEQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDG--SSSYEMDPADGYCFDDFHLHVGNEFPTNVA---------APGQY 337
            YGD  A P  + ++    NR WGW        +E  + +D+YAGAG N+L+NG   G V V    DG  + +YE+D  +GY   + HL VGN+    V          APGQ+
Sbjct:  115 YGDDYAKPNWDYVN----NRFWGWTNGPL---SEGSYEWDLYAGAGANILSNGTVIGKVYVDYE-DGCVTVTYEVD--EGYAIGEAHLWVGNDVLPKVKRGRTSVYTNAPGQF 217          
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Match: A0A1H5IQ07_9FLAO (Uncharacterized protein n=1 Tax=Salinimicrobium catena TaxID=390640 RepID=A0A1H5IQ07_9FLAO)

HSP 1 Score: 52.0 bits (123), Expect = 6.410e-5
Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    5 CDTSFGCEEVYGDSCASPKLNEID--GVAAN-RWGWYM---EAAFTST----EQVFTFDMYAGAGQNVLANGVNAGNVIVTVNVDGSS-SYEMDPADGYCFDDFHLHVGNEFPTNVAAPGQYTQAEYLDIGTF------YIIVHVGETC 400
            CDT++    +YGD       NE+D  G+  N  WGW +   E AF       + V+    YAGAGQN ++ G  AG +++T+  DG+    +++  +G   ++ H++VG ++P +  APGQ+     L   TF      +IIVH  E C
Sbjct:  392 CDTAY----MYGD-------NELDDLGLYDNANWGWGLVLDEDAFDDEYYEGDGVWRLPFYAGAGQNDVSKGWEAGYIVLTL--DGNELEVDIELNEGVSLNESHIYVGADWPES-DAPGQFD----LGTDTFTVGDAPHIIVHA-EVC 521          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig894.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K213_9PHAE3.090e-5464.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A285X5T6_9FLAO3.360e-935.25Uncharacterized protein n=1 Tax=Salinimicrobium se... [more]
A0A1M7D0L9_9FLAO2.120e-732.89Uncharacterized protein n=1 Tax=Flavobacterium sac... [more]
A0A238W7I4_9FLAO2.120e-733.11Uncharacterized protein n=1 Tax=Flavobacterium sp.... [more]
J1KVN6_9FLAO3.960e-729.25Uncharacterized protein n=5 Tax=Flavobacterium Tax... [more]
A0A0D0LDB1_9FLAO1.000e-630.20Uncharacterized protein n=2 Tax=Flavobacterium Tax... [more]
A0A6V6Z5T5_9FLAO8.830e-628.86Uncharacterized protein n=1 Tax=Flavobacterium chu... [more]
UPI001BBB83C11.370e-536.28Uncharacterized protein n=1 Tax=Clostridiales bact... [more]
A0A1H5IQ07_9FLAO6.410e-532.89Uncharacterized protein n=1 Tax=Salinimicrobium ca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig894contigP-littoralis_Contig894:53141..53587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size448
Hectar predicted targeting categorymitochondrion
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791783.3054748-CDS-P-littoralis_Contig894:53140..535871680791783.3054748-CDS-P-littoralis_Contig894:53140..53587Pylaiella littoralis U1_48CDSP-littoralis_Contig894 53141..53587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig894.11.1prot_P-littoralis_Contig894.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig894 53141..53587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig894.11.1

>prot_P-littoralis_Contig894.11.1 ID=prot_P-littoralis_Contig894.11.1|Name=mRNA_P-littoralis_Contig894.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
DLRHVVRLRGGVRRLVRLSEAQRDRRRGGQPLGLVHGSGLHVHRAGVYLR
HVRRSGAERPGERRQRWQRNRYRERRRLFFLRNGPCGRVLLRRLSPARGQ
RVPHKRGCSGTVHPGGVSRHRHLLHHRARGRDMHVLRPAPGPGPCSCAG
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mRNA from alignment at P-littoralis_Contig894:53141..53587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig894.11.1 ID=mRNA_P-littoralis_Contig894.11.1|Name=mRNA_P-littoralis_Contig894.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig894:53141..53587- (Pylaiella littoralis U1_48)
GATCTGCGACACGTCGTTCGGTTGCGAGGAGGTGTACGGAGACTCGTGCG CCTCTCCGAAGCTCAACGAGATCGACGGCGTGGCGGCCAACCGCTGGGGC TGGTACATGGAAGCGGCCTTCACGTCCACCGAGCAGGTGTTTACCTTCGA CATGTACGCCGGAGCGGGGCAGAACGTCCTGGCGAACGGCGTCAACGCTG GCAACGTAATCGTTACCGTGAACGTAGACGGCTCTTCTTCCTACGAAATG GACCCTGCGGACGGGTACTGCTTCGACGACTTTCACCTGCACGTGGGCAA CGAGTTCCCCACAAACGTGGCTGCTCCGGGACAGTACACCCAGGCGGAGT ATCTCGACATCGGCACCTTCTACATCATCGTGCACGTGGGCGAGACATGC ACGTCTTGCGACCCGCCCCCGGCCCCGGCCCCTGCTCCTGCGCCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig894:53141..53587-

>mRNA_P-littoralis_Contig894.11.1 ID=mRNA_P-littoralis_Contig894.11.1|Name=mRNA_P-littoralis_Contig894.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig894:53141..53587- (Pylaiella littoralis U1_48)
GATCTGCGACACGTCGTTCGGTTGCGAGGAGGTGTACGGAGACTCGTGCG
CCTCTCCGAAGCTCAACGAGATCGACGGCGTGGCGGCCAACCGCTGGGGC
TGGTACATGGAAGCGGCCTTCACGTCCACCGAGCAGGTGTTTACCTTCGA
CATGTACGCCGGAGCGGGGCAGAACGTCCTGGCGAACGGCGTCAACGCTG
GCAACGTAATCGTTACCGTGAACGTAGACGGCTCTTCTTCCTACGAAATG
GACCCTGCGGACGGGTACTGCTTCGACGACTTTCACCTGCACGTGGGCAA
CGAGTTCCCCACAAACGTGGCTGCTCCGGGACAGTACACCCAGGCGGAGT
ATCTCGACATCGGCACCTTCTACATCATCGTGCACGTGGGCGAGACATGC
ACGTCTTGCGACCCGCCCCCGGCCCCGGCCCCTGCTCCTGCGCCGGC
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