mRNA_P-littoralis_Contig887.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig887.26.1
Unique NamemRNA_P-littoralis_Contig887.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig887.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig887contigP-littoralis_Contig887:104094..104650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size449
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791773.9330804-UTR-P-littoralis_Contig887:104093..1041651680791773.9330804-UTR-P-littoralis_Contig887:104093..104165Pylaiella littoralis U1_48UTRP-littoralis_Contig887 104094..104165 +
1680791773.9712806-UTR-P-littoralis_Contig887:104501..1046501680791773.9712806-UTR-P-littoralis_Contig887:104501..104650Pylaiella littoralis U1_48UTRP-littoralis_Contig887 104502..104650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791773.9432993-CDS-P-littoralis_Contig887:104165..1041761680791773.9432993-CDS-P-littoralis_Contig887:104165..104176Pylaiella littoralis U1_48CDSP-littoralis_Contig887 104166..104176 +
1680791773.958537-CDS-P-littoralis_Contig887:104284..1045011680791773.958537-CDS-P-littoralis_Contig887:104284..104501Pylaiella littoralis U1_48CDSP-littoralis_Contig887 104285..104501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig887.26.1prot_P-littoralis_Contig887.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig887 104166..104501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig887.26.1

>prot_P-littoralis_Contig887.26.1 ID=prot_P-littoralis_Contig887.26.1|Name=mRNA_P-littoralis_Contig887.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
MAIRLPSMLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRVSLLHH
RVRGGGGGASLHREVMLLRNTQSSS*
back to top

mRNA from alignment at P-littoralis_Contig887:104094..104650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig887.26.1 ID=mRNA_P-littoralis_Contig887.26.1|Name=mRNA_P-littoralis_Contig887.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=557bp|location=Sequence derived from alignment at P-littoralis_Contig887:104094..104650+ (Pylaiella littoralis U1_48)
CTCAACGCATGTCGTGCTCAAGAGGCGGGGAATGGACGGGGAGTTTGTGC
ATCTTAGGCGATAGGTGTCTCAATGGCAATCAGGTATAACCTCTTGTCGC
GTGAACACATGTGCATGCCTATTCATAAAAGCCGATGAATTTCGAATAGT
TCCCATTTTTATATCGTTCACACCGCAACGGCTACCGACAGGCTGCCGTC
GATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGC
ACACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCT
CCGAGACCACGAGTAAGCCTACTTCACCATAGAGTCCGGGGTGGGGGTGG
CGGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAACACACAGAGTT
CCTCATAGCTTTTTTAATAGGTGTCCCGCGTAGCACTAGCGTCGAGGGTT
GATGCCTTCATCGACATCTTCAACGGCAAGTGATAGGTGTTCGTATTGTC
GCAGTATGTAGAGGGGCCTGTCGCGTGACTATGTTCCGTGCTCTCCTTTT
TCCCCTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig887:104094..104650+

>mRNA_P-littoralis_Contig887.26.1 ID=mRNA_P-littoralis_Contig887.26.1|Name=mRNA_P-littoralis_Contig887.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig887:104094..104650+ (Pylaiella littoralis U1_48)
ATGGCAATCAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATGAGGG
AGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGTGCAT
TGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCACCAT
AGAGTCCGGGGTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAATGTT
GTTGAGGAACACACAGAGTTCCTCATAG
back to top