mRNA_P-littoralis_Contig884.22.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig884.22.2
Unique NamemRNA_P-littoralis_Contig884.22.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig884.22.2 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 1.100e-94
Identity = 160/209 (76.56%), Postives = 163/209 (77.99%), Query Frame = 1 
Query:    1 TPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDSTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHSTAGVHARVARWWSSNADSNEDRAFTGNRTSTGKILAAVVK--------DEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAGWAEEYGADGSWKFKTSKGGTPVSDIL 603
            TPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT DSTKGNGPNYP GF+PGREGSDGAKLPVYMFLQQG LEEGVQEH+TA VHA VARWWSS ADSNEDRAFTGNRTSTGKILA+VVK        DEDLA YYGLKKSFSG                            WAEEY ADGSWKFKTSKGGTPVS  L
Sbjct:   31 TPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRTSTGKILASVVKADLYIPRQDEDLAFYYGLKKSFSG----------------------------WAEEYSADGSWKFKTSKGGTPVSVSL 211
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BLAST of mRNA_P-littoralis_Contig884.22.2 vs. uniprot
Match: A0A6H5K1G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G6_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 6.640e-49
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:    1 TPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATPDSTKGNGPNYPRGFQPGREGSDGAKLPVYMFLQQGVLEEGVQEHST 276
            TPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQAT DSTKGNGPNYPRGF+PGREGSDGAKLPVYMFLQQG LEEGVQEH+T
Sbjct:   31 TPARQSLGTRPAVTPTQSAKKDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPRGFKPGREGSDGAKLPVYMFLQQGALEEGVQEHTT 122
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BLAST of mRNA_P-littoralis_Contig884.22.2 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.160e-29
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:  595 DILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 873
            DILE RFAHIR GMG HKAPTA+QAA+   HGDTCR+SHG +RRN+SRS G  F++Q  A++RVALPVNA ER EVVRAATW   DHVFE+R+
Sbjct:  800 DILEHRFAHIRTGMGTHKAPTATQAARQAKHGDTCRVSHGLQRRNASRSTGS-FEVQSSASIRVALPVNASEREEVVRAATWDRDDHVFESRA 891
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BLAST of mRNA_P-littoralis_Contig884.22.2 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.550e-21
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:  595 DILEMRFAHIRAGMGCHKAPTASQAAQAGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVVRAATWRNADHVFETRS 873
            DILE RFAHIR+G G HK PTA QA +A   GDT R+ HG RRRNSSRS G  F ++    +R A P NA ER +VVRA T  +A HVFE+RS
Sbjct:  576 DILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSAGMAFQLEDSQGVRAAFPANASERAQVVRAETRDDAHHVFESRS 668
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BLAST of mRNA_P-littoralis_Contig884.22.2 vs. uniprot
Match: A0A6H5K994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K994_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.610e-14
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:  391 KDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFC--LPAGWAEEYGADGSWKFKTSKGGTPVSDILE 606
            +DEDLA YYGL+K  S + T WVLSRSSL  ERA+A  SF   LPAGW EE+G D SW FK +  GTPV+  +E
Sbjct:   63 RDEDLAQYYGLRK-VSSKPTKWVLSRSSLGEERAEAHISFGFGLPAGWCEEFGPDHSWTFKKTHDGTPVAISVE 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig884.22.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRI1_9PHAE1.100e-9476.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1G6_9PHAE6.640e-4995.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFP1_9PHAE7.160e-2969.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.550e-2159.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K994_9PHAE6.610e-1459.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig884contigP-littoralis_Contig884:68554..71042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1318
Hectar predicted targeting categoryother localisation
Exons4
Cds size654
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig884.22.2prot_P-littoralis_Contig884.22.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig884 68974..70603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791772.4353375-UTR-P-littoralis_Contig884:68553..687031680791772.4353375-UTR-P-littoralis_Contig884:68553..68703Pylaiella littoralis U1_48UTRP-littoralis_Contig884 68554..68703 +
1680791772.4480042-UTR-P-littoralis_Contig884:68898..689731680791772.4480042-UTR-P-littoralis_Contig884:68898..68973Pylaiella littoralis U1_48UTRP-littoralis_Contig884 68899..68973 +
1680791772.4960663-UTR-P-littoralis_Contig884:70603..710421680791772.4960663-UTR-P-littoralis_Contig884:70603..71042Pylaiella littoralis U1_48UTRP-littoralis_Contig884 70604..71042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791772.4586174-CDS-P-littoralis_Contig884:68973..691411680791772.4586174-CDS-P-littoralis_Contig884:68973..69141Pylaiella littoralis U1_48CDSP-littoralis_Contig884 68974..69141 +
1680791772.4733012-CDS-P-littoralis_Contig884:69300..695011680791772.4733012-CDS-P-littoralis_Contig884:69300..69501Pylaiella littoralis U1_48CDSP-littoralis_Contig884 69301..69501 +
1680791772.4856966-CDS-P-littoralis_Contig884:70318..706031680791772.4856966-CDS-P-littoralis_Contig884:70318..70603Pylaiella littoralis U1_48CDSP-littoralis_Contig884 70319..70603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig884.22.2

>prot_P-littoralis_Contig884.22.2 ID=prot_P-littoralis_Contig884.22.2|Name=mRNA_P-littoralis_Contig884.22.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp
MFLQQGVLEEGVQEHSTAGVHARVARWWSSNADSNEDRAFTGNRTSTGKI
LAAVVKDEDLACYYGLKKSFSGRSTTWVLSRSSLARERADAQWSFCLPAG
WAEEYGADGSWKFKTSKGGTPVSDILEMRFAHIRAGMGCHKAPTASQAAQ
AGMHGDTCRLSHGERRRNSSRSGGQPFDIQQGATLRVALPVNAEERGEVV
RAATWRNADHVFETRSV*
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mRNA from alignment at P-littoralis_Contig884:68554..71042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig884.22.2 ID=mRNA_P-littoralis_Contig884.22.2|Name=mRNA_P-littoralis_Contig884.22.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2489bp|location=Sequence derived from alignment at P-littoralis_Contig884:68554..71042+ (Pylaiella littoralis U1_48)
ACACCGGCGCGCCAAAGCTTGGGGACTCGTCCTGCGGTGACACCGACACA
ATCGGCCAAGAAGGATGAAGACGAGAGGCGTAAGCGCCGAACCTCCGGAC
CGCGCGCGGTCGGCACAGACGCTCAGCAGGCCACACCCGACTCCACGAAG
GTGCGCCAATCGACTTATTTGTTTTGTGCAGTACTGAGGGCGTACGAGGT
TGACGGCACTCTGTTTGGTTTCATATGCGCCGTTTGAAGTCGATGGTCGT
CCTCTTTTATTTTCGCAACAGCGGCCCCAAGATAACGCGCATATACGAAG
ATGATCGTTGGCTACTGTCTAAATATGCATGTTTATTCTTTGCAGGGGAA
TGGGCCGAACTACCCTCGCGGGTTTCAACCAGGTAGGGAGGGAAGCGACG
GGGCGAAGCTGCCTGTGTACATGTTCCTCCAGCAAGGCGTCCTGGAGGAG
GGCGTGCAAGAACACTCCACCGCTGGAGTGCACGCTCGTGTTGCCCGGTG
GTGGTCTAGCAACGCGGACAGCAACGAGGACCGCGCTTTTACTGGGAACC
GCACCTCGACCGGCAAAATCTTGGCTGCGGTGGTCAAGGTAGGTGTTGGT
CAGGAGTGGTCGTCGTATACGCGCTATTCAATGGACGTGTTTATCCAAGT
ACCCGTCTCTTGCAACCTTGCTGCCCCTCCTATGTGCCGGCGTTATTTAC
ACAGTGACTCTCGTGGTTTGTTGGCCGATTTATATAACCCGCGCCAGGAC
GAGGACCTCGCCTGCTACTACGGACTCAAGAAAAGCTTCTCTGGTAGGTC
CACGACGTGGGTGCTGTCGAGGTCGTCATTGGCACGAGAGCGAGCCGATG
CGCAGTGGAGTTTTTGTCTACCGGCAGGATGGGCGGAGGAGTACGGTGCT
GACGGCTCATGGAAGTTCAAGACTAGCAAGGGTGGAACGCCCGTCTCGGT
GAGCCTATCCTGGTGACGTGCGCGGTTGACCTCTTTATTTTCACGTTGGG
GGGGGGGTCATGCCGTCTCTCACGTCGTCGCTCGAGGAAGCACAAGGGAC
TTCCCTTCCTGTGACTTGAAGCAAGCAACCACGCGACCCAGGGGACGTTC
TTTTTGTCGAGTGCACCACGAGCGTCTTCGCTTTGGGCTAAGTCCGGAAC
ACGAAATCCTTTGTTCTTACGACGTCTTTCTGTGGCCAGGCGTTTTCGGG
GCTCACCCGGAAGACCTCAAGCGCGGCAAGAACAAGAAAGACGGGTACAT
CACGGGAGCGGACAGCCCTCACTTGGATAGGCTTTTGGAGATCCTGGAGT
TCTTCGACGTATGGCAGATTTCCCTCCAAGCGTCCTTCGAAGAAGGGGAG
TGGCAGAAGCACTTCATCACCGACCAGTCGTGGTTTGACATGCGCGCCAC
CATTGTTGGCTTCGTCTCGATGGCACGGTATATTTTCGCGGACAAGGATC
TCGTCGAGGAAGTAGACGGGAAGGCGACCCGCTTCCTATATCCACGCATG
TTCAGCCAGGTAACGAGCGTTTTTCCTGTTCTGTTTTTTTCTTCGACGCA
AGTACATGAACCGTTTGGCGGTGACCACCAGGGCGCGCCCGTGCTGGTCA
ATATCTGCAAGTGAACTCGGGGCTTGTGTGTGCGTATTTGTATAGTATAT
ATTTTTGTTGGCTGGCGCGACGCTATCGTCGTGTGGTGCTGGTGTCAATT
AACTCCTTTATGTCCGTACGTTCGACTCCCTCGACGCGCGTGACTGCCCC
TTGCATCTCACCCAGGACATTCTCGAAATGAGGTTCGCGCACATAAGGGC
TGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCGGCTCAAGCTG
GAATGCACGGAGATACTTGTCGGCTGTCCCACGGTGAACGGCGTCGCAAT
TCGTCGAGATCGGGCGGGCAGCCGTTCGACATCCAACAGGGAGCAACTCT
GCGAGTGGCATTACCTGTTAACGCGGAAGAGCGAGGAGAAGTAGTGAGAG
CCGCCACGTGGCGCAATGCAGACCATGTGTTTGAGACGCGCTCGGTGTGA
AGTACTGCTGTGTGTCGTGTGCTGCGTAACGCCGAAGTAGGAGCTTTCGC
TTTGTGGTTCGGTTTGAACTGTTGTGTGTGTGCGATGAGTTCCCGATAAT
ATTTCCTTGTGTTTTCGATGTTTATTCGTGCCATTGGTAGGAGGGGCGGC
AGCATCGTGTATGGTGTGTACCTACGTGGTTGATCTACCACAGTCTGCGT
GGAGGTTAGGGCTTGTGCGGTTGGCATAACCGCTTTGTGGTTCGATTGGT
GCCTTGTTTGAGGGCGTCCTTTCGTGAGATGAAATGATCACGAACTTGGT
TACAACCTGATACAACTCTGAGCGGAAATGCAAGGACGATATTGTAAGGA
AAAAGAGCGACATTCAGGGGTTCGATCCTCGCTCAGATCATTTTGTTTTT
CCCCAGAACGATTTTTTTGCAACACATATTTCAAGCTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig884:68554..71042+

>mRNA_P-littoralis_Contig884.22.2 ID=mRNA_P-littoralis_Contig884.22.2|Name=mRNA_P-littoralis_Contig884.22.2|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig884:68554..71042+ (Pylaiella littoralis U1_48)
ATGTTCCTCCAGCAAGGCGTCCTGGAGGAGGGCGTGCAAGAACACTCCAC
CGCTGGAGTGCACGCTCGTGTTGCCCGGTGGTGGTCTAGCAACGCGGACA
GCAACGAGGACCGCGCTTTTACTGGGAACCGCACCTCGACCGGCAAAATC
TTGGCTGCGGTGGTCAAGGACGAGGACCTCGCCTGCTACTACGGACTCAA
GAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGTCGAGGTCGTCAT
TGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGTCTACCGGCAGGA
TGGGCGGAGGAGTACGGTGCTGACGGCTCATGGAAGTTCAAGACTAGCAA
GGGTGGAACGCCCGTCTCGGACATTCTCGAAATGAGGTTCGCGCACATAA
GGGCTGGAATGGGGTGTCACAAGGCTCCTACGGCGTCTCAGGCGGCTCAA
GCTGGAATGCACGGAGATACTTGTCGGCTGTCCCACGGTGAACGGCGTCG
CAATTCGTCGAGATCGGGCGGGCAGCCGTTCGACATCCAACAGGGAGCAA
CTCTGCGAGTGGCATTACCTGTTAACGCGGAAGAGCGAGGAGAAGTAGTG
AGAGCCGCCACGTGGCGCAATGCAGACCATGTGTTTGAGACGCGCTCGGT
GTGA
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