mRNA_P-littoralis_Contig882.15.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig882.15.2
Unique NamemRNA_P-littoralis_Contig882.15.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig882.15.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig882contigP-littoralis_Contig882:43497..44354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size223
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791770.6743972-CDS-P-littoralis_Contig882:43496..435791680791770.6743972-CDS-P-littoralis_Contig882:43496..43579Pylaiella littoralis U1_48CDSP-littoralis_Contig882 43497..43579 +
1680791770.6883547-CDS-P-littoralis_Contig882:44215..442911680791770.6883547-CDS-P-littoralis_Contig882:44215..44291Pylaiella littoralis U1_48CDSP-littoralis_Contig882 44216..44291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791770.712161-UTR-P-littoralis_Contig882:44291..443541680791770.712161-UTR-P-littoralis_Contig882:44291..44354Pylaiella littoralis U1_48UTRP-littoralis_Contig882 44292..44354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig882.15.2prot_P-littoralis_Contig882.15.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig882 43497..44291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig882.15.2

>prot_P-littoralis_Contig882.15.2 ID=prot_P-littoralis_Contig882.15.2|Name=mRNA_P-littoralis_Contig882.15.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=53bp
RGEAKQDRSHANRPQRLLGSSPGCSNPRKSRQRCTLMVYTAVVHTVARTG
HP*
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mRNA from alignment at P-littoralis_Contig882:43497..44354+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig882.15.2 ID=mRNA_P-littoralis_Contig882.15.2|Name=mRNA_P-littoralis_Contig882.15.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig882:43497..44354+ (Pylaiella littoralis U1_48)
CGTGGAGAAGCAAAGCAAGACCGATCTCACGCCAACAGACCACAACGATT
ACTTGGCTCCAGCCCGGGTTGCAGTAACCCACGGTGGGTGGTGCGTTAAG
TGGCATGACTGGACGTTGATTGTTGTACACTTCGGATGTTAAGATAGACA
GGCTGCGTGTCCGAAGGTTTGTTTCTAATCGTTATTTTTATCCGTAAAAT
AGTGCGCAGCACACGCCCTCGGGATTGGTGGGGTTTGTTTGCCATGCTGT
GTTATTTGGGGAGGAGTGATGTCACAGCCTGCGTGTATATTTTCGTTGCT
TTTGCATTTCGGCGGGTTCACGAATCAAACGCGTGCATAGTGCAAATCGC
GTGGGCCGCTTATTCTATTACTTCGAAACATTTGTCATGCGGATCGCAGG
GTCGCAAGGAGTTGATGGCGGCGGTCGCACATTATGAGAACGTTGTCTGG
GACTCACTTCTGGATTACCGCTGCCTGATGTTGAACGACTACTTGTACAC
GAAATATTCAGGTAGTCTAGAACGCCGGACTAAACCGCCCCCCCTTCCGA
TGTCGTTGCCTGCTTGTTGGGTATCAGGCGTCACGGGTGGTAGCCAGTGA
TATGCCATAAGTCTGCGGTGCAACGCCAACAATGTGATGTATCTTGCGCG
GCGTTTCAGTCGAAGAATCATTCTCACCCGTTTCACCGACCAACCCCTTT
ATCGCGCCTGCAATGCCAGAAAATCGAGGCAGCGCTGCACTCTGATGGTG
TATACTGCCGTCGTCCATACCGTTGCTCGAACCGGCCACCCATGAGCGCC
ATCAAGGCGATTCCCCTAGGCAGTGGGAGTACTGTACAGCACTTTGCTTC
GGTTATTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig882:43497..44354+

>mRNA_P-littoralis_Contig882.15.2 ID=mRNA_P-littoralis_Contig882.15.2|Name=mRNA_P-littoralis_Contig882.15.2|organism=Pylaiella littoralis U1_48|type=CDS|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig882:43497..44354+ (Pylaiella littoralis U1_48)
CGTGGAGAAGCAAAGCAAGACCGATCTCACGCCAACAGACCACAACGATT
ACTTGGCTCCAGCCCGGGTTGCAGTAACCCACGAAAATCGAGGCAGCGCT
GCACTCTGATGGTGTATACTGCCGTCGTCCATACCGTTGCTCGAACCGGC
CACCCATGA
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