mRNA_P-littoralis_Contig879.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig879.6.1
Unique NamemRNA_P-littoralis_Contig879.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig879.6.1 vs. uniprot
Match: D8LDB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB3_ECTSI)

HSP 1 Score: 426 bits (1094), Expect = 1.660e-146
Identity = 210/331 (63.44%), Postives = 253/331 (76.44%), Query Frame = 1 
Query:    4 LRSLAILATTVCTGA-SSFSNIKISQFEQLGLDLTFLLSWDT----TESLSSVSDLIDIWLETRQSDPSSFVQTLLEQGVENTGSLWIDAGDSWAARSSWDTTLSGEAIVCIYNSTDIYDNACGEALGILPEAEAPYATAGEGISNVYVPRVAQNGSSLEFSVTWADGGGSGGLEDTAPLVDIWLTAQQVSPPARVELALQLNAQNERMSHLEVDMDWSMMGWDLNRDGQLQSCVYDPRDYENYACSDFVAFTASVGVDGSSGDSNARGDSVSGGTXXXXXXXXXXXVGVVGWLAVTTSRRRQRKRWVGTPNEAEALPEEIFVRPLDAYAG 981
            +R +A++A      A +SFSN+KISQF+Q GLDL+FL+SWDT    +E+ SS S LIDIWLETRQ++ SS V+T+L+QGVENTGS+W+DAGDSWA RSSWD T+SGE IVC+Y+S D++DNAC E LGILPEAEAP AT G+GISNV VPRV QNGS L FSVTW DGGG+GG EDTAP VDIWL A+Q  PPA VEL ++ N +N+ +SH EV MDWSMMGWDL RDGQLQSCVYD +DY+NYACSDFV+F A          +N  GD   GGT           +G+V WLA+T+SRRRQR+RW+GT NEAEALPE+ FVR  D Y+G
Sbjct:   24 IRGVAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTANTTSENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWAIRSSWDGTISGEGIVCVYHSDDLFDNACSEGLGILPEAEAPSATQGDGISNVDVPRVEQNGSYLSFSVTWGDGGGAGGFEDTAPFVDIWLVAEQSDPPAWVELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFAAMEETAADVDATNGGGDGGEGGTVLALVLAGGLVLGLVAWLAITSSRRRQRRRWLGTANEAEALPEDTFVRLSDPYSG 354
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BLAST of mRNA_P-littoralis_Contig879.6.1 vs. uniprot
Match: A0A6H5KP04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP04_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.520e-41
Identity = 70/123 (56.91%), Postives = 86/123 (69.92%), Query Frame = 1 
Query:  613 MSHLEVDMDWSMMGWDLNRDGQLQSCVYDPRDYENYACSDFVAFTASVGVDGSSGDSNARGDSVSGGTXXXXXXXXXXXVGVVGWLAVTTSRRRQRKRWVGTPNEAEALPEEIFVRPLDAYAG 981
            +SH EV MDWSMMGWDL RDGQLQSCVYD +DY+NYACSDFV+F A+         +N+ GD   GGT            G+V WLA+T+SRR+QR+RW+GT NEAEALPE+ F+R    Y+G
Sbjct:    2 LSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFAATEETAADGDATNSGGDGGEGGTVLALVLVGGLFSGLVAWLAITSSRRKQRRRWLGTANEAEALPEDTFIRLSGPYSG 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig879.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDB3_ECTSI1.660e-14663.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP04_9PHAE1.520e-4156.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig879contigP-littoralis_Contig879:42644..47339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size990
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001870.1
Cds size990
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791760.8486714-CDS-P-littoralis_Contig879:42643..428651680791760.8486714-CDS-P-littoralis_Contig879:42643..42865Pylaiella littoralis U1_48CDSP-littoralis_Contig879 42644..42865 +
1680791760.872718-CDS-P-littoralis_Contig879:44705..448461680791760.872718-CDS-P-littoralis_Contig879:44705..44846Pylaiella littoralis U1_48CDSP-littoralis_Contig879 44706..44846 +
1680791760.8885584-CDS-P-littoralis_Contig879:45393..456241680791760.8885584-CDS-P-littoralis_Contig879:45393..45624Pylaiella littoralis U1_48CDSP-littoralis_Contig879 45394..45624 +
1680791760.899457-CDS-P-littoralis_Contig879:46233..463961680791760.899457-CDS-P-littoralis_Contig879:46233..46396Pylaiella littoralis U1_48CDSP-littoralis_Contig879 46234..46396 +
1680791760.9110262-CDS-P-littoralis_Contig879:47106..473391680791760.9110262-CDS-P-littoralis_Contig879:47106..47339Pylaiella littoralis U1_48CDSP-littoralis_Contig879 47107..47339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig879.6.1prot_P-littoralis_Contig879.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig879 42644..47339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig879.6.1

>prot_P-littoralis_Contig879.6.1 ID=prot_P-littoralis_Contig879.6.1|Name=mRNA_P-littoralis_Contig879.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=330bp
MLRSLAILATTVCTGASSFSNIKISQFEQLGLDLTFLLSWDTTESLSSVS
DLIDIWLETRQSDPSSFVQTLLEQGVENTGSLWIDAGDSWAARSSWDTTL
SGEAIVCIYNSTDIYDNACGEALGILPEAEAPYATAGEGISNVYVPRVAQ
NGSSLEFSVTWADGGGSGGLEDTAPLVDIWLTAQQVSPPARVELALQLNA
QNERMSHLEVDMDWSMMGWDLNRDGQLQSCVYDPRDYENYACSDFVAFTA
SVGVDGSSGDSNARGDSVSGGTVLGLVILGAMVVGVVGWLAVTTSRRRQR
KRWVGTPNEAEALPEEIFVRPLDAYAGLL*
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mRNA from alignment at P-littoralis_Contig879:42644..47339+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig879.6.1 ID=mRNA_P-littoralis_Contig879.6.1|Name=mRNA_P-littoralis_Contig879.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4696bp|location=Sequence derived from alignment at P-littoralis_Contig879:42644..47339+ (Pylaiella littoralis U1_48)
ATGCTTCGTTCGCTCGCTATTCTCGCGACTACCGTATGTACGGGTGCGTC
GAGCTTCTCGAACATCAAGATCTCCCAATTCGAGCAGTTGGGCTTGGACT
TGACCTTCCTTTTATCGTGGGACACCACCGAGAGCCTATCATCCGTTTCG
GATCTGATCGACATCTGGCTCGAGACCAGGCAATCCGACCCTTCTTCCTT
TGTTCAGACTCTCCTCGAACAGGTATGATTTCCCTTCCAATATGCTTGAG
TCACTGCATGCAGCCGGTACGGCAGTAGAAGCACATGTGTGCCTGTGTGT
GTTGCCATTCCATCCATTCTGGGCGCCAGCAGCAGTTGATATGTACGCTC
CAGAGCGTATAAAGCTGTAAATACGAAGGGAATGTTTCAGGCCCACTCTT
GTGTAGATGTGGACTTGGAATTCCTCAGGTTGGATTACTTCTGCTGTTGT
ACGTATGATACTTTCGAAGCAGAAGCATGATACCATCATACAGTACAGAG
TGGCATTTTCCAAGCCTGATTTTCCATGTTGGAGTTACTGTAACTATGAT
ACAAGTATCCACAACACCAAACCTCACGTGAAAGCCGTGGATTCCAAGAA
ATCGGAGCTACAACACAACAAAAGTAGACTTTGAGCCGGTACGGGTCGTA
GGGCTGGCCCTTGTGCAGTTAGAATGGCACCCCCGTTCGTATGCTCCGAG
GAATACATTTTGAATTGATCGAGGTGTGACGTATCATACGTTAAACGTTC
CAGACATCAAGAGCACTTGGCCACACGACAGGAGACCTGTTGTTTGTTCA
TAATACGAGATTACACGTGGAATGGAGTCTAGGTTCTTCCACAGGCTGCA
AATCAGCAGCGTTCGAAACGAAGTACCAGGTATACCTCCAGTATGTTTAT
CTGGGATTAATCGCTCGTGCTCTTTCTCATACGAAGTGGTCCTGCTGTCT
CTTGTCATACTTACATTCGAGTGTGCACTGATGCACTTTTACACCAAGGG
GGACACCGGTGATACTAGGCTGTATGGTTATCCACATAACACCATTATTA
TAGGTAGGGGCACTCGCCTAACATCGCCAGGTTTGTGGCTTTTGTCGCGA
AGTAAGTTTGCAGGTTCGATTCTCTCCGAAAGCTTTTCCTTGCGGCTTTT
CAGTGTGTATATTCGTCCCATGTATTCTCTGCACCGGTCTACACCTTTCT
GTATGAAGTGGGTGCACCAGCCGGGGTCACAAGGAAGCCCACACACGAGC
TTTAATTTTTATTTTTATTGCCCACACCTGTCCTCCTGGGTTACTTGCCT
TTAGTTTTTCATGCGGGTTCAGCAACCCCGTCCCTCTGTTTATTTACGAA
TATTTCAATACTTCGCTTTCCCCTGCAAAATGCAAGGAAATGCTCTCAGA
GAGAATCGAACCTGCAACCGTGCTTACAGCTGGTAGGGTGACGAGGGAAC
CACTAGACCACCGGGGCGACCGATGACACTGGAACGCGAATTATTCGTGA
ACAACAGAGAGAAGGAATTGCTGAACCCGACTCGTATTAATAATCAAAGG
CAAGTACCGCAGGAGAAAAGGTGTGGGTAACATAAATAAAATGAAAAACG
AAAGGCTCGTGTGTGACCTTCCTTCTGTGTGACTCCGGCCGGTGCACCCA
CTTAATAACCAAAGGTGTAGACCGGTGCCCAGAATATATAGAACAAACAC
ACACACACACCTAGCATTGTCATCGTCGCGAGTTCTGGTTCTTCCTCATA
GTGCGTCGTGAACTACTGTAGTCCGAATTCTGTCCTGCCTTGCTGCCTTG
TATTTCAAGATGCTGGGAGTTGGATGCCGCTGCCATATAATTGTGCCGAA
AGCCTTGAACAGCAACGCCGTATCGTAGAGACGTTTGTTCCGATAGACGG
CATGTATGTATCGTACTGCACGAGACCAGTGCCTGAACCGAAACCGTTGC
GCGAGGACGCTGTTGCCTTCGTCCCGAGAATGCGCACCCTCTCCATCGAA
CCGTGGACTTCAACCTTACCATCAACCGATAATAGTGCCTTTGCCGTTTT
TTCTCGCACAAGGGTGTCGAAAACACCGGTTCACTGTGGATCGATGCTGG
TGACTCATGGGCTGCTCGCTCATCTTGGGACACCACTTTGAGCGGGGAGG
CGATCGTGTGCATCTACAACTCAACCGATATCTACGACAACGCCTGCGGC
GAGGTGAAGCGTGAACCGAAACTCGGTGCCTCTTGAGGCGAAACGAACAA
AAGTACTTCAAGCTCAGCAAGTTATCGCATCAAAAAGCTACTTGTGCCCA
CTGCGGTACACAATTCATACCCATTGAGGTACAAACAGCGTAGATACATG
TGATGTGCCGTAGCACGTACCTGAAACGCACCCTCTCCCACAGTTGTCGG
CTATCCCGTTCAATGAGACCTTTAAATCGTCCCCGCGCGTGAAAGTGTTT
TCCTCAGCATGCGGGTCCAACTTTAGTCGAACCCGAAAGCAGTTCACGCC
CGATTCGTGGAACTTACGCCCCCCGCTTCAATCTTGACCTCATGACGCTG
GTATTTGTTTTTTACCCGTATTTCCCTTCCTGGTACTTCGTACCTCGTAT
ATCCCCCGTAAATTGGTAAAACTATTTTCTTCGAGCTCAATAAGCAAGTG
GCAAGCGCCGAAGCCGTTTTACCTCCCGGGATGTCGAAGCCGTTTTATCT
CACGCAGTGATTTTTTCTACTTCCATACTCCACTCCCTTATGCTCTTCAG
GCGCTTGGAATCCTTCCCGAAGCTGAAGCCCCCTACGCCACCGCGGGAGA
AGGCATCAGCAACGTCTACGTTCCGCGCGTCGCCCAGAACGGGTCATCCC
TCGAGTTTTCAGTCACGTGGGCGGATGGCGGAGGGTCCGGGGGGCTCGAG
GACACGGCCCCGCTCGTCGATATCTGGCTAACCGCTCAGCAGGTTTCTCC
CCCGGCACGGGTTGAGCTTGCCCTACAGCTGGTGAGAAAAGCAGACACGC
CAATATGTTTCTTTTCTTGTCCTGCAGTCCCGTTTTTTTCTCTCTGCCGT
CATTGCGTATCCTGCTGTAGGTGTGTTGTTGGACAAGCACAGAGAATGTG
CATGTGCACAGTAGTCTTGTTTCGTGCTAATTAGCCCTGGAATGGGTATG
CGCGTAGAGCAACGTGACCTGGTGTGAGTTACGGCAGCTAATTCTGAACA
GGATAGGCAACGATGAATGAAATTGGCCGCTGGCCCACACCGGTATTGGT
TGATCGTTTCCTCAACAGACTCCCGAAAAAGCGAATATTGTGCTATGGTA
TGGTTTGTTCCCCTAAGACAACGACGGTTCCCCACTTTTTCTCTCCTGAG
GCAAGCATGACAAGTACAATCCGCTAGGAACACCGGGAGTGCTTCTCTCG
TAACAACGCGAGCTCTATTCATACCCCCGCCAGCTTTTCTGGAATGTCTG
GGAAAACCTTCAAGGCAAGGCTCCATCGGCATGCATTATGCTGAGTAAAA
CCCCGCCCCCCGCTCTCCGGTTGACTACGTATCGCGCACACGCTTGACAT
TGAAGAACAACCCTAATATCCATCCGCCATGCATGCACAGAACGCACAAA
ACGAAAGGATGTCGCACTTGGAGGTCGACATGGACTGGTCGATGATGGGC
TGGGATTTGAACCGCGACGGGCAGCTGCAGTCCTGCGTGTACGACCCTCG
AGACTACGAGAACTATGCCTGCAGCGACTTCGTGGCCTTTACGGCGAGCG
TCGGTGAAGAAGGTGAGGATCGCACCGCGCTACCCTCCTCCATAGAGGTG
AAAATTTCACGACGTCATCCTCGCCCCGATGAGGCACGAATTACTTTACT
CCATGTCCCCCTCACTGAAGGTAAGGCTTACACTGCGTTATACTCCCCCA
TCAGGGAGAAAAATTCACTGCGCTTTCCTCCCCCTTATCCGCAGAAAACA
ACACTGGTGTGTACAATCGAACAGGCTACGAATGAGGGAGTGTATATCAC
CATTTTCGGAAGCAAAACGAGACTCGGAAATGTCGATGGGAGGGGTAGGG
ACCCCGCAGTAGGGCACAGAGTACGTGAGGGGACCCAACACGCCGAATGC
ACCACAGTTTTTTCTTATTGCTCGTTTTCAGCACGGCAGACGACTAACTC
CGGTCGGGTTACTGCTGTACAGCAGTCACAGCGTGCAAGCATGTGCCGGA
GACATACACGCAGAGAAACCTACACAGGAATGCACCTTATTGCCTTTCCC
GGAAAGGGAGGAAGCTCCATGCTCGACCGTACGACAAAGACAACGACAGC
GACAACGACAACAGCAAGAACAACAGCCCAATGTGTAATTCGTCAAACCC
CGATAACCTCACCCCCATACCTATTCTCTCTCTCCCTCCCTCCCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCCGCCCGC
CCCCTAGTAGTAGGCGTCGATGGCAGCAGCGGCGACAGCAACGCCCGTGG
CGACTCAGTATCGGGCGGCACCGTGCTGGGCTTAGTAATCCTCGGGGCCA
TGGTCGTTGGCGTGGTGGGATGGCTGGCCGTAACCACGTCCCGCCGCAGG
CAACGCAAGAGGTGGGTCGGCACCCCAAACGAGGCCGAGGCTTTGCCGGA
GGAAATCTTCGTCCGCCCTTTGGATGCCTATGCGGGTCTCCTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig879:42644..47339+

>mRNA_P-littoralis_Contig879.6.1 ID=mRNA_P-littoralis_Contig879.6.1|Name=mRNA_P-littoralis_Contig879.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=990bp|location=Sequence derived from alignment at P-littoralis_Contig879:42644..47339+ (Pylaiella littoralis U1_48)
ATGCTTCGTTCGCTCGCTATTCTCGCGACTACCGTATGTACGGGTGCGTC
GAGCTTCTCGAACATCAAGATCTCCCAATTCGAGCAGTTGGGCTTGGACT
TGACCTTCCTTTTATCGTGGGACACCACCGAGAGCCTATCATCCGTTTCG
GATCTGATCGACATCTGGCTCGAGACCAGGCAATCCGACCCTTCTTCCTT
TGTTCAGACTCTCCTCGAACAGGGTGTCGAAAACACCGGTTCACTGTGGA
TCGATGCTGGTGACTCATGGGCTGCTCGCTCATCTTGGGACACCACTTTG
AGCGGGGAGGCGATCGTGTGCATCTACAACTCAACCGATATCTACGACAA
CGCCTGCGGCGAGGCGCTTGGAATCCTTCCCGAAGCTGAAGCCCCCTACG
CCACCGCGGGAGAAGGCATCAGCAACGTCTACGTTCCGCGCGTCGCCCAG
AACGGGTCATCCCTCGAGTTTTCAGTCACGTGGGCGGATGGCGGAGGGTC
CGGGGGGCTCGAGGACACGGCCCCGCTCGTCGATATCTGGCTAACCGCTC
AGCAGGTTTCTCCCCCGGCACGGGTTGAGCTTGCCCTACAGCTGAACGCA
CAAAACGAAAGGATGTCGCACTTGGAGGTCGACATGGACTGGTCGATGAT
GGGCTGGGATTTGAACCGCGACGGGCAGCTGCAGTCCTGCGTGTACGACC
CTCGAGACTACGAGAACTATGCCTGCAGCGACTTCGTGGCCTTTACGGCG
AGCGTCGGCGTCGATGGCAGCAGCGGCGACAGCAACGCCCGTGGCGACTC
AGTATCGGGCGGCACCGTGCTGGGCTTAGTAATCCTCGGGGCCATGGTCG
TTGGCGTGGTGGGATGGCTGGCCGTAACCACGTCCCGCCGCAGGCAACGC
AAGAGGTGGGTCGGCACCCCAAACGAGGCCGAGGCTTTGCCGGAGGAAAT
CTTCGTCCGCCCTTTGGATGCCTATGCGGGTCTCCTCTGA
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