mRNA_P-littoralis_Contig1203.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1203.2.1
Unique NamemRNA_P-littoralis_Contig1203.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1203.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1203contigP-littoralis_Contig1203:5652..7406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size606
Hectar predicted targeting categoryother localisation
Exons3
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789516.3410952-CDS-P-littoralis_Contig1203:5652..59311680789516.3410952-CDS-P-littoralis_Contig1203:5652..5931Pylaiella littoralis U1_48CDSP-littoralis_Contig1203 5653..5931 -
1680789516.352681-CDS-P-littoralis_Contig1203:6211..64531680789516.352681-CDS-P-littoralis_Contig1203:6211..6453Pylaiella littoralis U1_48CDSP-littoralis_Contig1203 6212..6453 -
1680789516.362411-CDS-P-littoralis_Contig1203:7324..74061680789516.362411-CDS-P-littoralis_Contig1203:7324..7406Pylaiella littoralis U1_48CDSP-littoralis_Contig1203 7325..7406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1203.2.1prot_P-littoralis_Contig1203.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1203 5653..7406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1203.2.1

>prot_P-littoralis_Contig1203.2.1 ID=prot_P-littoralis_Contig1203.2.1|Name=mRNA_P-littoralis_Contig1203.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=201bp
PATANVGWPPKKTKKWSMGHRTALLQLAAQHQIWPMKHKNDKQKERKQAF
EQACRTGVYKEIFENKPDNTIKSMYENLLKRKRAHNKAAISGGTGTSPPP
LDAESAALDKAAATLVDAIASSASQVKKEKDECEAAEELRQERIHKSRDD
GMRNCMPGAGATAFPKPNFLPGRGGGTRPAGGGGSTGGRADGAHGSAAGG
G
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mRNA from alignment at P-littoralis_Contig1203:5652..7406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1203.2.1 ID=mRNA_P-littoralis_Contig1203.2.1|Name=mRNA_P-littoralis_Contig1203.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1755bp|location=Sequence derived from alignment at P-littoralis_Contig1203:5652..7406- (Pylaiella littoralis U1_48)
CCGGCCACCGCCAACGTCGGATGGCCACCGAAGAAAACGAAGAAATGGTC
CATGGGGCACAGGACCGCCTTGTTGCAACTCGGTGAGGCATGAGGCTTAC
ATCTACGGCTGTGTGCGTGTCTGTGCGTTGTCCCCGCTGTGTTCCGTATG
CTGGTCATGCTTGCGGGCGTTGGATGTGCACACCTTCAGCGTAGCTCTCT
TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACTCTCTCTGTGCAGTCG
TGAAAACTGAGCGCAGCACACTCTACTGCTGTGCGGTTCAATTGTTTTGC
ATGTTTTTTTGTATGATAACCACTTTTTCGAGATCTCTCTCTCTCATGTC
TCTCTCTCTCTTCTCTCTCACACACACGTCCTCACCTGGCAGCTACAGCA
GCACTGCTGCAGACCTCCAAGATATGTGTATATGCTTGTGCTCTGTGTCT
ATATGTTGAGTGTGTTATGCTCCTATAAGGCTTCCAAACCCGGACCTCGA
CAGCGCTGGTAACTTGTTATACAGCGACAAGCTCCACACAGTGTAGCGTG
ACTAGTTAGTAGTGGATGATAGGTATAGGATATGTTGCCGCCAAAAGGAT
CCGACCGGAGTAGACTATAGATATACTGCTCGACTTTGATTTAAGTACTT
ACTGCTGTAGTGCGAGAGTAGGCCGAGGTTCGGGGCCAGGCACCTACGGT
TTCCACACAGGTAGTGTTCGTAAGAATGTTGGTGGGGTCAACATGTTGCG
CGTTGTTTAACAGAATTGGGATATTTGGTTGTCCGCATCGGTGTCTACAG
CAGCAGCACTCGACCTGACCGCTGCTGTGTCTTGCAATATATTTTGTCAC
CCCGTTCCTGATTTTGCTGTAGGTCCGTCCCGCACTATTTCCCCCTGGGT
CGGCAAGCCAACCCTCATCCCCCTCTCCCCGTCGATTTGGTGTTGAAACA
CAGCCGCTCAACACCAAATCTGGCCCATGAAGCACAAGAACGACAAACAG
AAGGAACGCAAGCAGGCGTTCGAGCAAGCATGCAGAACTGGAGTGTACAA
GGAGATTTTCGAAAATAAACCCGACAACACGATCAAGTCGATGTACGAGA
ATTTGCTGAAGCGGAAGAGGGCGCACAACAAGGCCGCGATCAGCGGCGGG
ACCGGCACCTCTCCCCCACCGCTCGATGCTGAGAGTGCGGCCCTGGTGAG
TCAATCGAACCACAAGTTGGCGTGTTTATGCTGGCCGGATTTCCGTCGCG
TTAGACCTGGAAGCGAGGGTAAGATAGGGGGGTGGGCGCGTCCCCGCCGT
CTCATCCTCAGCGGATCTCGTCACAACGGGAACGCAACAGCACTGCTGTG
TACTTGCACTCGAATGTAGGGGTAGGCGCACCTGGAATCCATATGCCTCC
CGCGAACTGTCCACACCCGACCGCGCCTCATACCCCGAAATTTGTCCTTC
CTGCATTGGCACTCGTAACGTACAGGACAAGGCCGCCGCCACGCTGGTCG
ACGCCATCGCCTCCAGCGCGAGCCAGGTCAAGAAGGAGAAGGACGAATGT
GAGGCGGCGGAGGAGCTACGACAAGAACGCATCCACAAGAGCCGCGACGA
CGGCATGAGGAACTGCATGCCGGGTGCGGGAGCGACGGCTTTCCCGAAGC
CCAATTTCCTGCCGGGACGTGGCGGTGGCACGAGGCCTGCAGGTGGCGGA
GGCAGCACTGGCGGTCGTGCCGACGGTGCTCATGGGTCTGCCGCCGGCGG
CGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1203:5652..7406-

>mRNA_P-littoralis_Contig1203.2.1 ID=mRNA_P-littoralis_Contig1203.2.1|Name=mRNA_P-littoralis_Contig1203.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig1203:5652..7406- (Pylaiella littoralis U1_48)
CCGGCCACCGCCAACGTCGGATGGCCACCGAAGAAAACGAAGAAATGGTC
CATGGGGCACAGGACCGCCTTGTTGCAACTCGCCGCTCAACACCAAATCT
GGCCCATGAAGCACAAGAACGACAAACAGAAGGAACGCAAGCAGGCGTTC
GAGCAAGCATGCAGAACTGGAGTGTACAAGGAGATTTTCGAAAATAAACC
CGACAACACGATCAAGTCGATGTACGAGAATTTGCTGAAGCGGAAGAGGG
CGCACAACAAGGCCGCGATCAGCGGCGGGACCGGCACCTCTCCCCCACCG
CTCGATGCTGAGAGTGCGGCCCTGGACAAGGCCGCCGCCACGCTGGTCGA
CGCCATCGCCTCCAGCGCGAGCCAGGTCAAGAAGGAGAAGGACGAATGTG
AGGCGGCGGAGGAGCTACGACAAGAACGCATCCACAAGAGCCGCGACGAC
GGCATGAGGAACTGCATGCCGGGTGCGGGAGCGACGGCTTTCCCGAAGCC
CAATTTCCTGCCGGGACGTGGCGGTGGCACGAGGCCTGCAGGTGGCGGAG
GCAGCACTGGCGGTCGTGCCGACGGTGCTCATGGGTCTGCCGCCGGCGGC
GGC
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