mRNA_P-littoralis_Contig874.18.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig874.18.2
Unique Name	mRNA_P-littoralis_Contig874.18.2
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig874.18.2 vs. uniprot

BLAST of mRNA_P-littoralis_Contig874.18.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig874	contig	P-littoralis_Contig874:50204..58112 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	650
Hectar predicted targeting category	other localisation
Exons	3
Cds size	423

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791755.012469-UTR-P-littoralis_Contig874:50203..50258	1680791755.012469-UTR-P-littoralis_Contig874:50203..50258	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig874 50204..50258 +
1680791755.0247514-UTR-P-littoralis_Contig874:50270..50441	1680791755.0247514-UTR-P-littoralis_Contig874:50270..50441	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig874 50271..50441 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791755.0359952-CDS-P-littoralis_Contig874:50441..50571	1680791755.0359952-CDS-P-littoralis_Contig874:50441..50571	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig874 50442..50571 +
1680791755.046307-CDS-P-littoralis_Contig874:57819..58112	1680791755.046307-CDS-P-littoralis_Contig874:57819..58112	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig874 57820..58112 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig874.18.2	prot_P-littoralis_Contig874.18.2	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig874 50442..58112 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig874:50204..58112+
coding sequence from alignment at P-littoralis_Contig874:50204..58112+

protein sequence of mRNA_P-littoralis_Contig874.18.2

>prot_P-littoralis_Contig874.18.2 ID=prot_P-littoralis_Contig874.18.2|Name=mRNA_P-littoralis_Contig874.18.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MEGSPKIATQRKRRGVAADQGSRDVTDEGVDEHHHLYVADSSTGFSKSLN
TDATDEEQSSDDEAPEEVSAAAATALAGLRRKAEHQARQAAAVPKRKRAR
TSLSKGAGSGKNVSLEDGGSGDDEGGSGDDGLELPSDLLLR

mRNA from alignment at P-littoralis_Contig874:50204..58112+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig874.18.2 ID=mRNA_P-littoralis_Contig874.18.2|Name=mRNA_P-littoralis_Contig874.18.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7909bp|location=Sequence derived from alignment at P-littoralis_Contig874:50204..58112+ (Pylaiella littoralis U1_48)
GTGGTAATAAATAATTATTATTTATTACCATAGCCTTTGCTCAGGCCCAA
AGACTGTGACATCTAAGATGTCATAGTCTTGCTCAGGCCCTCCTCAGTCC
CCTCTCCTGGGCTCCCAACACCAACGGCGATCAACCTCGCCTTCTACGTG
CACGAGCAGAAGTACAACAGCACCCACACTGCACTCACGAGCGTAGCTGA
AAGAGAGGAGAGCTTAGCACAAAGGCAGGGCAGGTGCGATGGAGGGATCG
CCGAAGATTGCCACGCAGAGAAAGCGGAGAGGTGTGGCTGCTGATCAAGG
CTCCCGAGACGTCACAGATGAAGGTGTGGATGAGCACCACCACCTCTATG
TCGCGGACAGCAGTACCGGTGTGTAGTACCTTACCCTTGAGACGCACAGA
ATGTGTATCGTACCATATGTCCGTTTTTCGTTTGTGTGTACCGCTGTACG
AGCCGGGTGGCGTTCCAAAGAAATCGGACCTACCTTCTGTAGCCTGCCTC
CGTATCCCTTTGACCGATTTTGAAAAATAAAAATGTACAAAGTACAAGGG
TTTCGGCGGCTGACGCCGCCACGGTCCTGACCGAATCCAAGATATAGAGG
CACGCGGAAGGCGTGATGGTGGGACATGGCCTGGTGAACATGTCGACGAT
ACACGGGGTCGAAAATAGCACATACGACATACATACATATATTTATTTAT
TTGGTTGTTGTAAAGAGAAAGAAAACGGAAATAGGAAAGAGTCCCGGGCC
GCTATAACGAAAAAACAAACAATCCCACTAAAGAACAACGAAAAAACAAA
CAAACCTTCAGAGTAATCGTACGTACACAATCCACAGCAGTAAAGGCCAC
AACCGACACACACGTACCTGGTACAACAGTAGTACCTACCTGATGCATGC
AGTGTACTACTGCAGGGAAAAGGCAAGTCATGTGGTAATTCCCGATTGCT
AAACGCTCTATCCCCTTTTGTATTACAGCAGGAAACGAAAAAACGGTACT
AAACATCGGCGAAGAAGGGAAAGTGGGAGGAGTACGGATCACTGATGATT
ACAGCTGTGCGGGTTAAATGTCGGGAATTCGCAAGTGGGTGGGTGGGGAG
GTGGGAGGCAATATTATTTAGTAAGCAAGACTAGACACGATCCTCCGTAG
AACAACATTTGTTGCTGGGAGGTGGTACGTAGCCCGCAGGACTACGTCAC
ACACGATGTGAACATTTTGCCGCGGCTTCGAAGACGGTACCTACATTTCT
TTTTACGTTTTGTCTTTTTGAACGGCATTCCATAGCCCTACAGAAGAACT
GATGTGAACCGCCAGAGCCCAGAGGGACACACACCAACAACCCAGCCGAA
CCCGAACCCGAATCCTAAACCACGCGGAGGACTGCTAGGACACATAATAC
TATGTACAGCAGTAGTATTAGTACTACTGTTTGCTGTAGCAGTAGTACAG
TAGTGGTCTTGTGTGAGGAATGGGGGAGGGTTCCCCTCAAGAGACCTCTG
CTACGACCGTACTCTGTATTTATTTGTTATATATGGGACGGGTGGCCTTA
CTAGTACTTCGTGTTTATGATACTACTACAGTAAACGCTGTTGTTGTTGT
TGTTGGTTTGATCTCAGGGCCCCCAACGGTTCACTGCTTGCTGTGTGCGA
GGACGCTTCCGCAGAGAGAACAGAGAGAGGCATCCCGCCGCGGTCTACTC
GACCACGTGTACTGTAGTTCTACGTGAAAACGAATTGAATCCTGGAGTAT
CATATGATTTTCATGTATATATCATATGGCCCTATGCATCACCGCGGGAC
CGCATTCAAATTTAACAACAACTTACAATTAATTGACAAATATAATAACC
TGGGCTTCCAGACCGAGCTGTAAGGGTGGGGCCTACGTAATTTTTTTGGA
CTCGAACATCGAACATCGAACAAGCGGCGTAATCATGTGATTGGCCGTGA
CAATAAAAAAAAACAATAGATGTTAGGGTGTTAGAGTTTTTCTACGCCGG
ATCTTGCAGGGGCGATTCCGCCTAAAACTCTAACATCTTTCACAAAAACT
CGAAAACCTAACATCGAACCTACAGTCCCGTGGGCTATTATTGACGAAAT
AAATTAATTAGTAACAAGAAAAGAAGACCCGCGTCTATCGCTCCCTCTCA
GGACAAGAGAGAGAGGGCGACCGGGCGACCGAGAGAGAGACGACCGCAGA
GCATAGCCGCAAAACAAGTGTCTATGCCGAGCGACAGCGAGGTTTCGACT
GATCTCAGGGCCCCGCGTGCGCAAGCGGGGCCAGGTGAGACGCAATCACA
CGGGCGTGGCTTCCTGTCGCAACCACACAGCAGCCGTAGCAGTAGCAGCA
GCAGCAGCAGCAGCTGCGTACCGATATATATGACAGCCCGGTCTATTGGG
GAGCACTTGCGTGTGTGTGTGTGTGCCTGTGGGATTTTTTTACTCGCCTT
CTCCGAAATCACAAAGGACCCAAAAAGTCGAACATCGAACTATCCGCTTG
TTCGATGTTCGATGTTCGAGTCCAAAAAAATTACGTAGGCCCCACCCTAA
AGAGGCAGGTGAGAGACAGGTGCTGGCCTGTGAGCGGTATTTTAGAGGTC
CCGCCCCCTTACAGTTTTTACTACTACTTCGTGCTCTGTGTTCCATGATA
CACTCTGCTGCTGTTGATTTTTGATGAGGACCCCCAACGGTTTACTGAAC
GTTTCCGCAGGGAGAGCAGAGAGAGGCATGAAAAATCAATGCTCTGTGGG
ATCCTGGCATTATACTTACTGCTGTGTGAATTATTCAAAGTACGTATCCG
TAAAGCAGTACACTACAGAGGAATATAGTACTGCTTGCTGTTGTTGTGAT
TCAACCATATCAACCGAAAAGTGGTGGTTAGCTGCGCTGATGATCTGGAT
CTGACGACTGGGTGGGCTGGATATAACATGTGTACGAATGAGTGTAAAGT
ACTTGTATGTACGTACGAACGAGTATTATTAGGGTTAACCCTAACCTGTA
TCATACGCCATACGCTGTTTGTTGTTGTTGAGATGTTCACGCAAGATGCT
GCGTGTACAGAAGAATAAAATCTGATCTATGATAATAATAGGCGATCGAA
CTTGTCTTATTAGGTCTATGTCTGAGAAGCAATATGTATCATACAGAGAG
GGGTGGATGATTTCGAATTCCCGTTTCCCGCCGTGGTCTGTATATTATTA
GACTATGAATTGATGTATCCAATATGATCCAATCCTACAGAGGAAGGAGG
GATGGATACATGCCGTAAAAATGATCCGAATTAGAGTCTCTCGGGACAGA
CTACCTGAGATCGGATGTGAACACCGCACAGACTTGTGGACGATGGTGAT
GATGAGATGTGATGCAGAAGGCCTGCGTGTCTACCACGCGGACAGGATAT
TTCACAGAGTGCGGGTCGAACGTCGAAGTCAAAGAAAGCGTGAGTATTCA
AGATGATATGATGTTGATGTAAATAAATGCAGCAGTTCTGTGTTTTCCAA
AAGCCGAGAGATTTTGAGTGCGTCCCCCAGTCTTATCTCTCTGTTCCTGC
TGTTGTTATAGCGGATACTCTCCTGATGATGATGATGTCATACTGATCCA
ATATGATGTGATCCAAAATGAGAGTGTGGGTCGAAGTCAACGCCAACAAA
CAGCAGATCTGCGCAGATGAAAAGATGAGAAGATGTGATGATGATGACAA
TATCGTACTCGTACAGCAAAAAAAAGTGGAGAGAGCAGTTGTCTGATGTG
ATACTTGTATACTGAGTATATGATATGACAGGGGTAGATAAATGATCCAA
AACGATCTCCGTCCTATGATGATGCAGCAAAGATAAACGACCCAATGTGA
TCGGATATGACAGGGGTAGATACATGATCCAAAACGACCTCCGTCCTATG
ATGCAGAAAAGATAAACGACCCAATGTGATCGAAATTACCCAATATCATA
TGATGATACTGTATGTACAGGAAAAGGAAAGACAAATGACCCGAGATGAT
CGAAATGCAAGGTTCCGATGTAGTCTTACTTCAAGTGATATGCAGGAGGA
ACGGAATGAACACCCCAAATGATTCATGGATGCCAAATGATCCAAATCAG
AGGTCCGCCGAAGTCTGATTTCAAGTGATTTCAAGGGATATGTGCACATG
CGCAGATAAAAAGATGAGAAGATGTGATGATGATGATGATATCGTACTCG
TACACCAAAAAAAGCGGAGAAAGCAGTTGTCTGCTGTGATATACGTAGTA
TATGATATGACAGGGAAGGGGTAGATAAGTGATCCAAAACGATCTCCGTC
CTATAATGCAGGAAAGATAAACGACCCAATGTTATCGAAATTACCCAATA
TCATATGATATGATACTGTACAGGAAAAGGAAAGACAAATAATAACCCAA
GATGATCGAAATGAAAGGTTCCGCCGTGGTCTAATTTCAAGTGACATGCA
GGAGGAATGGAAAAAATATATATATCCATGGAAGCCAAATTATCCAAATG
AGAGGTCCGCCGTGGTCTAATTTTAAGTGATTTCAAGTGCTTGCGTGAGA
AAGCTCTGGAGCAAAAAATGCCGGTCTGTCAGCGGCCGAGAGGTCCCGCA
ATGCCAATCTAATTGTAAGTGAAAATGGATGCATAATGAAAATGCTGATC
AATGAGGGAAAACGTAATTTGTATAGTTTCTATGATTCTGCTCCTGTGTT
CCACAGTTATCACAGATACAGCAGTACTCTTTTGTACAGCAGTATTGCTT
GATGTACCATACTGCTGTAAGGAGTCTGGTGAACCCGACGAGGGTCAGGT
GTCCGAAAACGCTCAGTTTGGCAGCATACTGGCTCACACCTACACACCCA
CAGACAGCTGTTTTTCCGAAGTCATCACCGGGCGGTTTACGCCAACCTAT
GATATCGGTATTGCCACCCCCACCATCAACGCATCGTGCCATTAGTATTG
GTACAGCAGGGCACACCCCTTGGCCCTCCGGCTACGGCATTTTTTTAATT
TTTTAAGGGCAGACGCCAAAAAGCGGTATACCGCCTGGTTTCCGCGCCAC
AAAGCGGTACACCAAAATGCACCTGGGCATTTGAGCCCCGTTCGCATCGC
TGATTGGTTGATTACTCCAAGTAACTCTTTTTGGCATCAGCAGTCGGCGG
TACATCACATCAGGGCTTCTCAGGTCGGCTGTCACCGCCTTTTGGCGCGA
CCCGTACCGCTTTCTGGCGAGATACTCCCTATAGGCCATTCGTCCAACAG
CCTTTGCCACTTCCAAGTCACGCATCATCCAAGGAAGCCACGTCACCTAA
TTATACCACCCCCGGCCCTTAGTGGGTGAAGAACCTCTCGACACGTTCTC
CGCACGTATTCTCTACACCCGACCCCTCCGGGACCTTACAGCTTGCTGCA
AGCTGATGCGTGCTTGGAAAAAGGAAAGAAAAAAAGAAAGAAAAAAAGTC
GTTGTACTTGCGGCGGCATTTGGTGTCTATCCCATCATGCCCCTGGCCCC
TGCTTGGATCGGCTAATATAGCCATGATTCACATGCGGATTTTGATAATA
GAAATGCAGAGATCAGGGCTACATTCGCGTTGCCCAAGTTTTGGTGAAGC
AAAACATTATTTAGATTTGGACCTGTACATGGCTTCGTCATGATGGTAGT
TGGAGCGCTTATTTCAACGACTAAAAATGGGGCTGTCTGTGTGCGCATTC
ATGTAAGAGGTGTGTTACCTCTGGTTCGGCTGCCGCGACGTACGTGGCTA
CTCACCTTCTTGCGCCGATGACATGCTCAGAGCATAAAGTCTGCCGCTGT
TGTGCCTTGAACTCGGGAAAATCCCAACGGGCATGAAATTTCAGGCACAG
CAGTAGTACTGCTGTAGTATCGTGAGTGTTTCGCATTGCCGGCTCGCTCT
GTCAGTTAGTTCTGTCAGCAACGAAGGGCTCTGAGCTTTCGCACTCTGCT
GCTCTGCTGCTGCTGCTGTTCTGCTGCTGCTGCTCTCTATGCTGCTGTAA
CGAGGAGAAAGTTTTTTTCCTCCGTCCATGCCTGCTGTGTGCTACGCTGG
GCGCTGCCTTGCACTTGTTGTGTTGTGTGGTACTGCCGCTGTGCCATCGG
CTGTGTGCAGCAAGAGGATTCAAAAAGGAACCGACCTAGAACCAACCCAC
AGAACCAGTGGCTGATACCGACGTCTGTATTTCCCCATTCTGTAGCCATG
TATAAAAAAGTGGCTGATACCGACCGACGGCGCACCGACAATAAAAAACC
GCCCTATTTCCTCGGCAAATACTCCCGTCCCCGGGGTTTCCAACGTTTCG
CGTCTACCGTACCTTCAAAGCTGGGTTGGCACCTACGCAATGGGGGCACC
GACGCCAACATTTATTTTTCGCGAAGCTTTCGCGACGATGTGCTAACGCA
GCCCCACTCACTGCAGCCGTAGTGCAGCAGTCGTCCCTGGTACTCTTTCT
GCTGTAGATATACAGCATGATGCATGGGAAATCGACCATTCCAACCGGGG
GTCGGAGGGGTGGGTCATCTTTCGTAGACGTTCGAAACCTGGTAAATATG
AGATTACAGCAGTACGTCGAAGTAATTTTATTCAACACATTCTTGAACAA
AAACCCACCCTCTTTCGAAAGCCATGAAGTGAACCAGACTATTTCAGGCC
AGTTCTCGCTCACTCACTCGCTTGCTTGCTCCCAAAAACTTTACTACGTC
CTCCCTATTTACGATACCTTGTACATACATTTCGAAGTACTATTTTATAC
TGGTACGTCACTTGTCATGTCGCATCTTCAATGTCTGCACTCTAAACACG
AGAACCAAAGCCGATCTGCAGGTAGACCACGCACCAGAGAATGCTTTCGA
TCTCCCTCCATCATATAACATACTACCTGGTGCTGCTGTTTCATAACAGG
GTCTCGGACTCATCATGTCGATTTTCACACGTGCAGTAGCAGCTGCTGTA
GCAACACACGCGACCGAGCAGGCAGTAGTTGTAGCACAACCCATGACATC
AGAGGGAGTGCTGTTCTCGTAGCGGCCCTCCGTGAGCTGTCGGGACCTGA
TGCTGCTCTCTTTACGAAACCCTTCGTATCTGGGGTACTCCTCTCCCTCT
CGAAACCACCGTGGGTACACCTGCTTGTCGTCGAGCTGTTGTCTTGACGC
GGTCACGACGAACGCTGAGGACGGGACGGTGGGTGGAGCAGAGCAATGGC
CCTGAACATCCAAGACACGTGCACACCCTACAGCATTGCCAAGAATTTCG
GCATGCATACGTATGAGGGGCTAATGCCGCGATGACGAAGAAGCTGCAAG
GTTTTGAAGATCACGGGCATGCCTCGGCCTTCCACGACATCGTCCAGCTC
GCACCACCCTGAAACGGGATGCCTGGCTCAGGCTGTTGTGTTTCTTGTGT
TTCTAAAATTTAAAATACTTTCCTGTCACCGGAGTACTTTTAACTATTTC
GAGTGGGCCTAAACTGCTGCCATACGGCTTCATACTGCGCTGTTCCAGAA
TCCCTAGTGTACATGCTCTGTACATTCATGTTGAATCGCCTCTCGTTGCC
CGCGACAGCCACTAACTTCCAACTTCTCTCCTTTGCCCCTTTCTTTCCCT
CTGTCTCTTGCATGAGGTTTTTCAAAATCGCTCAATACAGACGCCACCGA
CGAGGAGCAGAGCAGCGATGACGAGGCGCCGGAAGAGGTGAGCGCTGCAG
CGGCGACCGCCCTCGCAGGTCTGCGCAGAAAGGCGGAACACCAGGCCCGC
CAGGCAGCTGCCGTCCCGAAGCGAAAGCGCGCCCGAACCTCGCTTTCCAA
GGGCGCGGGGAGTGGCAAGAACGTCTCCTTGGAGGATGGGGGTTCAGGGG
ATGATGAGGGGGGGTCGGGTGACGACGGGCTGGAGCTACCCTCGGACCTG
CTGTTGAGA

Coding sequence (CDS) from alignment at P-littoralis_Contig874:50204..58112+

>mRNA_P-littoralis_Contig874.18.2 ID=mRNA_P-littoralis_Contig874.18.2|Name=mRNA_P-littoralis_Contig874.18.2|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig874:50204..58112+ (Pylaiella littoralis U1_48)
ATGGAGGGATCGCCGAAGATTGCCACGCAGAGAAAGCGGAGAGGTGTGGC
TGCTGATCAAGGCTCCCGAGACGTCACAGATGAAGGTGTGGATGAGCACC
ACCACCTCTATGTCGCGGACAGCAGTACCGGTTTTTCAAAATCGCTCAAT
ACAGACGCCACCGACGAGGAGCAGAGCAGCGATGACGAGGCGCCGGAAGA
GGTGAGCGCTGCAGCGGCGACCGCCCTCGCAGGTCTGCGCAGAAAGGCGG
AACACCAGGCCCGCCAGGCAGCTGCCGTCCCGAAGCGAAAGCGCGCCCGA
ACCTCGCTTTCCAAGGGCGCGGGGAGTGGCAAGAACGTCTCCTTGGAGGA
TGGGGGTTCAGGGGATGATGAGGGGGGGTCGGGTGACGACGGGCTGGAGC
TACCCTCGGACCTGCTGTTGAGA