mRNA_P-littoralis_Contig873.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig873.22.1
Unique NamemRNA_P-littoralis_Contig873.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.330e-28
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 MFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHI 174
            MFPYLAPVAQQV GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK I
Sbjct:    1 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRI 58
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BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 4.920e-27
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 MFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHI 174
            MFPYLAPVAQQV GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK I
Sbjct:  116 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRI 173
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BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 8.330e-27
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    4 FPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHI 174
            FPYLAPVAQQVFGNQAGAAQVERDFS C NLL  NRSR+DTYWVEM+MFL  N++HI
Sbjct:   42 FPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHI 98
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BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 5.150e-24
Identity = 49/58 (84.48%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 MFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHI 174
            MFP LAPVAQQV GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK I
Sbjct:  514 MFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRI 571
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BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.040e-21
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 MFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHI 174
            +FP+LAPVAQQVFGNQA  +QVERDFS  G LL PNRSR+DTYWVE++MFL  N+ HI
Sbjct:  203 IFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHI 260
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BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.550e-18
Identity = 42/57 (73.68%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    4 FPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHI 174
            F  L   A +V GNQAGAAQVERDFS+C NLL  NRSRIDTYWVEM+MFL VNYK I
Sbjct:  218 FQALYMTAGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKCI 274
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BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.550e-18
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    4 FPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNY 165
            FP L  VAQQ FGNQA AA VERDFS CG  +VPNRSR+D YWVEM+MFLK N+
Sbjct:  402 FPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANF 455
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BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.890e-17
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 FPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHI 174
            FP L  VAQQ FG+Q  AA VERDFS CG  LVPNRSR++ YWVEM+MFL  N+K I
Sbjct:  744 FPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFI 800
[Close]
BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.500e-14
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 MFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHI 174
            MFP L  VAQQ FG+QA AAQ+ERDFS CG     NRSR + YW+EM+M LK NY+ I
Sbjct:  503 MFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELI 560
[Close]
BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.090e-13
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 FPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMFLKVNYKHI 174
            FP L  VAQQ FG+QA AAQ+ERDFS  G L   NR+R+D YWVEM++FLK N++ I
Sbjct:  399 FPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCI 455
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig873.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KP16_9PHAE2.330e-2886.21Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE4.920e-2786.21Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KSA7_9PHAE8.330e-2782.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE5.150e-2484.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE2.040e-2172.41Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBM2_9PHAE2.550e-1873.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W6_9PHAE4.550e-1872.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJJ9_9PHAE7.890e-1766.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE5.500e-1462.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFQ8_9PHAE9.090e-1361.40Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig873contigP-littoralis_Contig873:63428..63601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog281687.CJA39270
PFAMsDimer_Tnp_hAT
Model size174
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.95e-08
EggNOG OGs2FIUQ@1|root,2TK9M@2759|Eukaryota,39H9U@33154|Opisthokonta,3CM3V@33208|Metazoa,3E2QG@33213|Bilateria,40QE1@6231|Nematoda,1M7XR@119089|Chromadorea,416JG@6236|Rhabditida
DescriptionhAT family C-terminal dimerisation region
Cds size174
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791754.8465362-CDS-P-littoralis_Contig873:63427..636011680791754.8465362-CDS-P-littoralis_Contig873:63427..63601Pylaiella littoralis U1_48CDSP-littoralis_Contig873 63428..63601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig873.22.1prot_P-littoralis_Contig873.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig873 63428..63601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig873.22.1

>prot_P-littoralis_Contig873.22.1 ID=prot_P-littoralis_Contig873.22.1|Name=mRNA_P-littoralis_Contig873.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MFPYLAPVAQQVFGNQAGAAQVERDFSACGNLLVPNRSRIDTYWVEMLMF
LKVNYKHI
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mRNA from alignment at P-littoralis_Contig873:63428..63601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig873.22.1 ID=mRNA_P-littoralis_Contig873.22.1|Name=mRNA_P-littoralis_Contig873.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig873:63428..63601+ (Pylaiella littoralis U1_48)
ATGTTCCCCTACCTCGCACCCGTGGCGCAGCAGGTGTTCGGGAATCAGGC
CGGTGCGGCGCAGGTTGAGCGCGACTTCAGTGCTTGCGGTAACCTACTCG
TGCCCAACAGGAGCCGCATCGACACCTACTGGGTGGAGATGCTGATGTTC
CTCAAGGTCAACTACAAGCACATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig873:63428..63601+

>mRNA_P-littoralis_Contig873.22.1 ID=mRNA_P-littoralis_Contig873.22.1|Name=mRNA_P-littoralis_Contig873.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig873:63428..63601+ (Pylaiella littoralis U1_48)
ATGTTCCCCTACCTCGCACCCGTGGCGCAGCAGGTGTTCGGGAATCAGGC
CGGTGCGGCGCAGGTTGAGCGCGACTTCAGTGCTTGCGGTAACCTACTCG
TGCCCAACAGGAGCCGCATCGACACCTACTGGGTGGAGATGCTGATGTTC
CTCAAGGTCAACTACAAGCACATC
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