mRNA_P-littoralis_Contig872.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig872.7.1
Unique NamemRNA_P-littoralis_Contig872.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig872.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig872contigP-littoralis_Contig872:21891..22418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size494
Hectar predicted targeting categorysignal anchor
Exons2
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791752.519648-UTR-P-littoralis_Contig872:21890..219481680791752.519648-UTR-P-littoralis_Contig872:21890..21948Pylaiella littoralis U1_48UTRP-littoralis_Contig872 21891..21948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791752.532884-CDS-P-littoralis_Contig872:21948..222021680791752.532884-CDS-P-littoralis_Contig872:21948..22202Pylaiella littoralis U1_48CDSP-littoralis_Contig872 21949..22202 -
1680791752.5460274-CDS-P-littoralis_Contig872:22237..224181680791752.5460274-CDS-P-littoralis_Contig872:22237..22418Pylaiella littoralis U1_48CDSP-littoralis_Contig872 22238..22418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig872.7.1prot_P-littoralis_Contig872.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig872 21949..22418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig872.7.1

>prot_P-littoralis_Contig872.7.1 ID=prot_P-littoralis_Contig872.7.1|Name=mRNA_P-littoralis_Contig872.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
TPAPHSCHDRPKRNTKLGRIRGCGATDCAPFEGGFFGSYFLAKGKAIYTL
TCLLVKRPSTGFPPPRRHFVCLFSCLFVCLFFAKRSRRRPNASTSLPPRR
IPVGLPCRTFGSWVVPIQRTLFAAARTISTTQQIRSKTAVQQAL*
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mRNA from alignment at P-littoralis_Contig872:21891..22418-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig872.7.1 ID=mRNA_P-littoralis_Contig872.7.1|Name=mRNA_P-littoralis_Contig872.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig872:21891..22418- (Pylaiella littoralis U1_48)
ACGCCTGCGCCACACTCGTGTCATGACCGACCAAAACGAAACACAAAACT
CGGTCGGATTCGGGGCTGTGGGGCTACTGACTGTGCACCGTTTGAAGGCG
GTTTTTTTGGTTCCTACTTTTTGGCCAAAGGAAAAGCGATCTACACATTA
ACGTGTTTGTTGGTCAAGCGACCGTCGACAGGCCGTACCGTAGCTTTCAG
CGCTCTTCACGGCTAGGGTTTCCTCCACCGCGGCGCCATTTTGTTTGCTT
ATTTTCTTGTTTGTTTGTTTGTTTGTTTTTTGCAAAGAGGTCAAGGAGAC
GCCCAAATGCCAGCACGAGTCTACCACCACGTCGCATACCGGTAGGCCTC
CCTTGCAGAACTTTTGGGAGCTGGGTCGTTCCCATTCAGCGGACACTATT
TGCTGCAGCCCGCACGATTAGTACTACACAACAAATTAGAAGTAAAACAG
CAGTGCAACAGGCACTCTGATCGTCCACGTCCTCGTGTATTACATCTCGA
CATATTACGGTCTTTCTGGAACGGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig872:21891..22418-

>mRNA_P-littoralis_Contig872.7.1 ID=mRNA_P-littoralis_Contig872.7.1|Name=mRNA_P-littoralis_Contig872.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig872:21891..22418- (Pylaiella littoralis U1_48)
ACGCCTGCGCCACACTCGTGTCATGACCGACCAAAACGAAACACAAAACT
CGGTCGGATTCGGGGCTGTGGGGCTACTGACTGTGCACCGTTTGAAGGCG
GTTTTTTTGGTTCCTACTTTTTGGCCAAAGGAAAAGCGATCTACACATTA
ACGTGTTTGTTGGTCAAGCGACCGTCGACAGGGTTTCCTCCACCGCGGCG
CCATTTTGTTTGCTTATTTTCTTGTTTGTTTGTTTGTTTGTTTTTTGCAA
AGAGGTCAAGGAGACGCCCAAATGCCAGCACGAGTCTACCACCACGTCGC
ATACCGGTAGGCCTCCCTTGCAGAACTTTTGGGAGCTGGGTCGTTCCCAT
TCAGCGGACACTATTTGCTGCAGCCCGCACGATTAGTACTACACAACAAA
TTAGAAGTAAAACAGCAGTGCAACAGGCACTCTGA
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