mRNA_P-littoralis_Contig871.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig871.13.1
Unique NamemRNA_P-littoralis_Contig871.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig871.13.1 vs. uniprot
Match: D8LK44_ECTSI (ABC transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK44_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.340e-5
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:    2 RELDVPADELFSSFNLTHPVGSASISQV 85
            RELDVPA+ELFSS NLTHP+GSASISQV
Sbjct:  156 RELDVPAEELFSSLNLTHPIGSASISQV 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig871.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK44_ECTSI1.340e-589.29ABC transporter-like protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig871contigP-littoralis_Contig871:36310..36928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size479
Hectar predicted targeting categorymitochondrion
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791751.1538694-UTR-P-littoralis_Contig871:36309..363201680791751.1538694-UTR-P-littoralis_Contig871:36309..36320Pylaiella littoralis U1_48UTRP-littoralis_Contig871 36310..36320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791751.165272-CDS-P-littoralis_Contig871:36320..365171680791751.165272-CDS-P-littoralis_Contig871:36320..36517Pylaiella littoralis U1_48CDSP-littoralis_Contig871 36321..36517 +
1680791751.1793013-CDS-P-littoralis_Contig871:36657..369281680791751.1793013-CDS-P-littoralis_Contig871:36657..36928Pylaiella littoralis U1_48CDSP-littoralis_Contig871 36658..36928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig871.13.1prot_P-littoralis_Contig871.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig871 36321..36928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig871.13.1

>prot_P-littoralis_Contig871.13.1 ID=prot_P-littoralis_Contig871.13.1|Name=mRNA_P-littoralis_Contig871.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MCPLMSSSVVLTLRIPSGLRPLARCVCRGVRCVAIFPVRVIRKRLGPILL
HASNFDFTLPPATLYSSPAVCLHWHLKASLHSQTRYIPHGCAARTRREAQ
HGGIMCLVDRVRVRVKASKGKHLIFSAAVCTIWCSRGLNGVTDLIVDTQY
PKLRIS
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mRNA from alignment at P-littoralis_Contig871:36310..36928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig871.13.1 ID=mRNA_P-littoralis_Contig871.13.1|Name=mRNA_P-littoralis_Contig871.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=619bp|location=Sequence derived from alignment at P-littoralis_Contig871:36310..36928+ (Pylaiella littoralis U1_48)
GAGGGAGCTCGATGTGCCCGCTGATGAGCTCTTCAGTAGTTTTAACCTTA
CGCATCCCGTCGGGTCTGCGTCCATTAGCCAGGTGTGTGTGTCGTGGTGT
GAGGTGCGTCGCGATTTTCCCTGTGAGGGTCATACGTAAAAGGCTTGGCC
CTATCCTTTTGCATGCCTCCAACTTTGATTTCACGTTGCCTCCAGCTACA
CTCTACAGCACATTCGGTCCTCGGCAAACTCCGGCCTTCCTTGTACACTT
TGGTCTTATCGCAAGTAAGTCTCGTGATAATTTGGATTACTTTGGAAGCA
TTGTGTATTAACAATACCGCGCGTGGAGCTTGGCGACCTATGTTTTGTTT
CTCCTGCTGTTTGTCTACACTGGCATCTGAAAGCAAGCCTGCATTCTCAG
ACCCGCTACATTCCGCACGGCTGTGCCGCACGAACACGCAGGGAAGCGCA
ACACGGTGGGATAATGTGTTTGGTTGATAGGGTTAGGGTCAGGGTTAAAG
CTAGCAAGGGAAAGCATTTGATTTTTTCTGCCGCGGTATGTACAATTTGG
TGCAGCAGGGGGCTCAATGGTGTCACAGATCTCATTGTCGACACGCAATA
TCCCAAGCTTCGAATTTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig871:36310..36928+

>mRNA_P-littoralis_Contig871.13.1 ID=mRNA_P-littoralis_Contig871.13.1|Name=mRNA_P-littoralis_Contig871.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig871:36310..36928+ (Pylaiella littoralis U1_48)
ATGTGCCCGCTGATGAGCTCTTCAGTAGTTTTAACCTTACGCATCCCGTC
GGGTCTGCGTCCATTAGCCAGGTGTGTGTGTCGTGGTGTGAGGTGCGTCG
CGATTTTCCCTGTGAGGGTCATACGTAAAAGGCTTGGCCCTATCCTTTTG
CATGCCTCCAACTTTGATTTCACGTTGCCTCCAGCTACACTCTACAGTTC
TCCTGCTGTTTGTCTACACTGGCATCTGAAAGCAAGCCTGCATTCTCAGA
CCCGCTACATTCCGCACGGCTGTGCCGCACGAACACGCAGGGAAGCGCAA
CACGGTGGGATAATGTGTTTGGTTGATAGGGTTAGGGTCAGGGTTAAAGC
TAGCAAGGGAAAGCATTTGATTTTTTCTGCCGCGGTATGTACAATTTGGT
GCAGCAGGGGGCTCAATGGTGTCACAGATCTCATTGTCGACACGCAATAT
CCCAAGCTTCGAATTTCG
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