mRNA_P-littoralis_Contig87.169.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.169.1
Unique NamemRNA_P-littoralis_Contig87.169.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig87.169.1 vs. uniprot
Match: D7G928_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G928_ECTSI)

HSP 1 Score: 421 bits (1083), Expect = 4.980e-142
Identity = 266/457 (58.21%), Postives = 301/457 (65.86%), Query Frame = 1 
Query:    1 FPKGLSTTRFHQGFQRRKRSDIRQDKSRLQREGVKQRLSLLHLERRRQRLGDLDKRNDFSLTTDT--ANRQSTTPFHIQPRTRETGALSEVAERAEYLLLRDSKYKFHAPAWSGKNHDERQDLLRREGLNKPKKSTLLGIGGADLVSAGTEDMFSKAIYDPAKACAVEGLVETCVPGRYTPRKVAVARKIQQVSVTTTAALHDHAPIQRLGQECSGGGGGASGSLRASSSPAALGTVFRVVPNGIGNHSILPGRGGATTAGIAPSKRLCWSRSTPTLVSQGYKEGQGSASPGTVISTPPPNLCFDQSSSSLGSASTRTAGDGGEGGRGSKSIFAKRLHAVTMTGNLPNDKGDRYSANEGGSTAGKSGRGNRGLTRSQSDFGSGGR---TGGWERGGRSGENAAFVHDSSLANHAQVSTTTSGTNLARLGHSTSRGASPAQRRMNEQLALDLAVVRSL 1356
            F KGLSTTRFHQGFQRRK+S+IRQD+SRLQRE +KQ +S+LHLERRRQRLG LDKRN F+L T    ANR+ TTPFH+QPRTRETG+LSEVAERAEYLLLRDS+YKFHAPAWSGKNHDERQDLL+REGLNKPKKSTLLG+G ADL SAG  DMFSK+IYDPAK CAVEGLVETC PGRYTPRKV  AR+         AA  D  P  R GQE SG         R+ SSP AL TVFRVVPNG+GNHS + GRGGAT AGIAP KRLC SRSTPT+ S   K   G+   GT +    P       S S G  S R  G GGEGGRG+ S+FA+RL + T                     +G + RG+RGLTR             T G  R   +G        +S  +  + S    G   ARL    SRG SPA+RR N+QL LDLA +RSL
Sbjct:    2 FLKGLSTTRFHQGFQRRKQSNIRQDESRLQREALKQHMSVLHLERRRQRLGSLDKRNGFNLITGQFDANRRCTTPFHVQPRTRETGSLSEVAERAEYLLLRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDPAKTCAVEGLVETCFPGRYTPRKVTSARR-------AAAASRDDTPPLRQGQEKSG--------QRSCSSPGALDTVFRVVPNGLGNHSTVGGRGGATVAGIAPCKRLCGSRSTPTIRSPENKAEVGT---GTPLRKSSP-----MRSPSPGGGSRRHTGSGGEGGRGAGSVFAERLLSAT---------------------SGSARRGSRGLTRXXXXXXXXXXXXXTQGVARATTAGTEGFVKKTASPEDCTRRSPGEGGPGSARL----SRGQSPAERRSNDQLTLDLATIRSL 410
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G928_ECTSI4.980e-14258.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:342432..344391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G928
Model size1365
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.17e-143
EggNOG OGs2EXPF@1|root,2SZAY@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002120.1
Cds size1365
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791746.148284-CDS-P-littoralis_Contig87:342431..3426711680791746.148284-CDS-P-littoralis_Contig87:342431..342671Pylaiella littoralis U1_48CDSP-littoralis_Contig87 342432..342671 +
1680791746.171128-CDS-P-littoralis_Contig87:342977..3430691680791746.171128-CDS-P-littoralis_Contig87:342977..343069Pylaiella littoralis U1_48CDSP-littoralis_Contig87 342978..343069 +
1680791746.185263-CDS-P-littoralis_Contig87:343358..3443911680791746.185263-CDS-P-littoralis_Contig87:343358..344391Pylaiella littoralis U1_48CDSP-littoralis_Contig87 343359..344391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.169.1prot_P-littoralis_Contig87.169.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 342432..344391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.169.1

>prot_P-littoralis_Contig87.169.1 ID=prot_P-littoralis_Contig87.169.1|Name=mRNA_P-littoralis_Contig87.169.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=455bp
FPKGLSTTRFHQGFQRRKRSDIRQDKSRLQREGVKQRLSLLHLERRRQRL
GDLDKRNDFSLTTDTANRQSTTPFHIQPRTRETGALSEVAERAEYLLLRD
SKYKFHAPAWSGKNHDERQDLLRREGLNKPKKSTLLGIGGADLVSAGTED
MFSKAIYDPAKACAVEGLVETCVPGRYTPRKVAVARKIQQVSVTTTAALH
DHAPIQRLGQECSGGGGGASGSLRASSSPAALGTVFRVVPNGIGNHSILP
GRGGATTAGIAPSKRLCWSRSTPTLVSQGYKEGQGSASPGTVISTPPPNL
CFDQSSSSLGSASTRTAGDGGEGGRGSKSIFAKRLHAVTMTGNLPNDKGD
RYSANEGGSTAGKSGRGNRGLTRSQSDFGSGGRTGGWERGGRSGENAAFV
HDSSLANHAQVSTTTSGTNLARLGHSTSRGASPAQRRMNEQLALDLAVVR
SLRN*
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mRNA from alignment at P-littoralis_Contig87:342432..344391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.169.1 ID=mRNA_P-littoralis_Contig87.169.1|Name=mRNA_P-littoralis_Contig87.169.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1960bp|location=Sequence derived from alignment at P-littoralis_Contig87:342432..344391+ (Pylaiella littoralis U1_48)
TTTCCAAAAGGGCTATCTACGACCAGATTTCACCAGGGCTTCCAGCGACG
TAAACGGTCGGATATTAGACAGGACAAATCGAGACTCCAAAGAGAGGGAG
TTAAGCAGCGACTGAGCTTGCTTCACCTCGAAAGGCGGAGACAGAGGCTC
GGCGATCTCGACAAGCGAAATGACTTCAGTCTGACCACGGACACAGCCAA
CCGCCAATCCACTACACCTTTCCATATACAGCCGAGGACGGTGAGCGGTA
CCTTTGCCGCAGGGTGCGTCCGGTTTATTGCTATTACGCTCGACGGGATG
TGTATGGTATGTTATCCGCTTCATGCTGCTATGTACTTCGAGGTATATAA
TACGTGCAGGCAAGGGGCTTGTTCATGGCTGTGCCCCACTTGACGTGGGT
CGTACCTGACCGCAGTGATGAGGTGGTACACTACTGTAAAGAAGGTCTAG
CTTAAACTTAATAGGGTGCGGTATGCAGCAGTGTAACAGTCGTTGCGTGT
ACATTTTTCGCTGCTTTCACCGAGATTCCGCCCTGTTCTTTCGCAGAGGG
AAACTGGCGCATTGTCAGAGGTGGCCGAACGCGCGGAGTATCTTCTTCTT
CGCGATTCCAAATATAAGTTCCACGCACCTGCCTGGAGGTGAGATCCATG
TGGTCGGCGCCCTCCGTTTTTGCCTGCTGTGGGCGAAGGATACAGTGAAA
CAACGATTTAGACGGAGTTAGCCTGCGACCGGTCCGTCTCGTTTGTCTTT
CCCGTTACCCCTTTGAACATCTCGACTTATCCGACGTCTACTTACACTCG
ACAAATCATCTGATTTATCGACACAAACAAACGTTGTCGCGTACTCCAAG
TACATTTAATCACCTCGGGAATCGTGCCACCTATTCCCTTAAACGACTGT
GACCCTCGACGTTGCCCCTGGTGATAGCGGGAAGAATCACGACGAGCGCC
AGGATCTCCTTAGGCGAGAGGGACTAAACAAGCCCAAGAAATCCACCCTC
CTCGGTATCGGAGGTGCCGATCTTGTGTCGGCAGGCACGGAGGACATGTT
TTCGAAGGCCATATACGACCCCGCAAAGGCCTGTGCCGTGGAAGGCCTGG
TCGAAACGTGTGTCCCAGGGCGCTACACACCACGTAAAGTGGCCGTTGCT
CGAAAAATACAACAAGTTTCGGTAACCACGACAGCGGCATTACACGATCA
TGCGCCGATACAGCGGCTTGGCCAAGAATGTAGCGGTGGCGGTGGAGGCG
CTAGCGGTAGTCTGCGAGCCTCTTCATCGCCAGCCGCGTTAGGCACCGTG
TTCCGAGTCGTGCCTAACGGGATAGGAAATCACAGCATCCTTCCGGGACG
CGGGGGGGCGACTACTGCCGGTATCGCGCCCTCGAAACGTCTTTGTTGGT
CTCGAAGCACCCCAACCTTGGTGAGCCAGGGATACAAAGAAGGACAAGGT
TCGGCGTCGCCAGGCACAGTCATAAGTACCCCGCCTCCGAATCTTTGTTT
CGATCAATCGTCAAGTTCTCTCGGCAGTGCCAGCACAAGAACTGCTGGCG
ATGGGGGAGAAGGTGGACGAGGGTCTAAGTCGATATTTGCAAAAAGGCTC
CACGCCGTTACGATGACGGGGAACCTGCCAAACGATAAAGGCGATCGCTA
TAGCGCTAATGAAGGTGGATCAACTGCTGGTAAGAGTGGAAGGGGCAACC
GAGGGTTGACGCGATCACAGTCAGACTTCGGAAGCGGGGGTCGGACTGGT
GGGTGGGAGAGAGGCGGCAGATCAGGAGAAAATGCGGCTTTTGTTCATGA
TTCGTCGTTGGCAAATCATGCACAAGTGTCCACGACCACTAGCGGCACAA
ACTTGGCGCGGTTAGGACATTCCACGTCAAGGGGGGCGAGTCCCGCCCAG
CGAAGAATGAACGAGCAACTGGCCTTGGACTTGGCTGTCGTCCGATCCCT
GCGAAACTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:342432..344391+

>mRNA_P-littoralis_Contig87.169.1 ID=mRNA_P-littoralis_Contig87.169.1|Name=mRNA_P-littoralis_Contig87.169.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1365bp|location=Sequence derived from alignment at P-littoralis_Contig87:342432..344391+ (Pylaiella littoralis U1_48)
TTTCCAAAAGGGCTATCTACGACCAGATTTCACCAGGGCTTCCAGCGACG
TAAACGGTCGGATATTAGACAGGACAAATCGAGACTCCAAAGAGAGGGAG
TTAAGCAGCGACTGAGCTTGCTTCACCTCGAAAGGCGGAGACAGAGGCTC
GGCGATCTCGACAAGCGAAATGACTTCAGTCTGACCACGGACACAGCCAA
CCGCCAATCCACTACACCTTTCCATATACAGCCGAGGACGAGGGAAACTG
GCGCATTGTCAGAGGTGGCCGAACGCGCGGAGTATCTTCTTCTTCGCGAT
TCCAAATATAAGTTCCACGCACCTGCCTGGAGCGGGAAGAATCACGACGA
GCGCCAGGATCTCCTTAGGCGAGAGGGACTAAACAAGCCCAAGAAATCCA
CCCTCCTCGGTATCGGAGGTGCCGATCTTGTGTCGGCAGGCACGGAGGAC
ATGTTTTCGAAGGCCATATACGACCCCGCAAAGGCCTGTGCCGTGGAAGG
CCTGGTCGAAACGTGTGTCCCAGGGCGCTACACACCACGTAAAGTGGCCG
TTGCTCGAAAAATACAACAAGTTTCGGTAACCACGACAGCGGCATTACAC
GATCATGCGCCGATACAGCGGCTTGGCCAAGAATGTAGCGGTGGCGGTGG
AGGCGCTAGCGGTAGTCTGCGAGCCTCTTCATCGCCAGCCGCGTTAGGCA
CCGTGTTCCGAGTCGTGCCTAACGGGATAGGAAATCACAGCATCCTTCCG
GGACGCGGGGGGGCGACTACTGCCGGTATCGCGCCCTCGAAACGTCTTTG
TTGGTCTCGAAGCACCCCAACCTTGGTGAGCCAGGGATACAAAGAAGGAC
AAGGTTCGGCGTCGCCAGGCACAGTCATAAGTACCCCGCCTCCGAATCTT
TGTTTCGATCAATCGTCAAGTTCTCTCGGCAGTGCCAGCACAAGAACTGC
TGGCGATGGGGGAGAAGGTGGACGAGGGTCTAAGTCGATATTTGCAAAAA
GGCTCCACGCCGTTACGATGACGGGGAACCTGCCAAACGATAAAGGCGAT
CGCTATAGCGCTAATGAAGGTGGATCAACTGCTGGTAAGAGTGGAAGGGG
CAACCGAGGGTTGACGCGATCACAGTCAGACTTCGGAAGCGGGGGTCGGA
CTGGTGGGTGGGAGAGAGGCGGCAGATCAGGAGAAAATGCGGCTTTTGTT
CATGATTCGTCGTTGGCAAATCATGCACAAGTGTCCACGACCACTAGCGG
CACAAACTTGGCGCGGTTAGGACATTCCACGTCAAGGGGGGCGAGTCCCG
CCCAGCGAAGAATGAACGAGCAACTGGCCTTGGACTTGGCTGTCGTCCGA
TCCCTGCGAAACTAA
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