mRNA_P-littoralis_Contig87.128.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: A0A6H5JHU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU3_9PHAE) HSP 1 Score: 390 bits (1002), Expect = 4.180e-130 Identity = 278/322 (86.34%), Postives = 290/322 (90.06%), Query Frame = 1
Query: 67 VLQLETIVASLRSSDPSSXXXXXXXXXXXXXQSEKVVYKPRPRPTSKSSSTKSAPVQQTTNEVKVAHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWVLEEEVCEREEERAVPQEGGGDGDXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXXXXXGDNNXXXXXXXXXXXESGRVDEPVQKDGVGEGGAES 1032
+LQLETIVASLRSSDPS XXXXXXXXXXXXXQS+KVVYKPRPRPTSKSSSTKSAPVQQTTNE+KVAHMRSVSAQLQLDR+ALIAFNKKNMALPESERHVW+KR+K+KDGSVVVQRLDRIVDN SLD LL+N+A RAVVN MLV GGPE +M STIR Y VFLRDGKLTTISAQFKGGVGTEYLWTEDAAL RPSADWMNGTRR+MDPRRA +PRTMALWV EEEVCE EEE AVPQEGGGDGD XXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX XXXXXESGRVDEPVQKDGVGEGGAES
Sbjct: 118 MLQLETIVASLRSSDPSXXXXXXXXXXXXXXQSKKVVYKPRPRPTSKSSSTKSAPVQQTTNEMKVAHMRSVSAQLQLDRTALIAFNKKNMALPESERHVWDKRVKRKDGSVVVQRLDRIVDNASLDCLLRNDALRAVVNGMLVGDGGPELSMTSTIRTKYRVFLRDGKLTTISAQFKGGVGTEYLWTEDAALPRPSADWMNGTRRRMDPRRADAEPRTMALWVPEEEVCEGEEEGAVPQEGGGDGDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXESGRVDEPVQKDGVGEGGAES 429
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: A0A6H5KWG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG7_9PHAE) HSP 1 Score: 320 bits (821), Expect = 2.450e-104 Identity = 223/317 (70.35%), Postives = 234/317 (73.82%), Query Frame = 1
Query: 82 TIVASLRSSDPSSXXXXXXXXXXXXXQSEKVVYKPRPRPTSKSSSTKSAPVQQTTNEVKVAHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWVLEEEVCEREEERAVPQEGGGDGDXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXXXXXGDNNXXXXXXXXXXXESGRVDEPVQKDGVGEGGAES 1032
TIV+SLRSSDPSS XXXXXXXXXXXX P +P Q +TNE KVAHM+ +SA+LQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLD LL+N+ATRAVVNNMLVDKGGPERNMKSTIR TYWVFLRDGKLTTIS QFKGGVGTEYLWTEDAALRRPSADWMN TRRQMDPRRAHIDPRTMALWV P++ DG+ DG XXXXXXXXXXXXXXX XXESGRVDEPVQKDGVGEGGAES
Sbjct: 65 TIVSSLRSSDPSSSXXXXXXXXXXXXXXXXXXXXPTEF---------HSPKQPSTNEEKVAHMQQLSAKLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDCLLRNDATRAVVNNMLVDKGGPERNMKSTIRTTYWVFLRDGKLTTISEQFKGGVGTEYLWTEDAALRRPSADWMNDTRRQMDPRRAHIDPRTMALWV--------------PKKNDDDGN-------------------DGNEGDXXXXXXXXXXXXXXX-------------XXESGRVDEPVQKDGVGEGGAES 326
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: A0A6H5JX91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX91_9PHAE) HSP 1 Score: 206 bits (525), Expect = 5.700e-59 Identity = 105/172 (61.05%), Postives = 132/172 (76.74%), Query Frame = 1
Query: 262 AHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWVLEEEVCEREEERAV 777
A + ++SAQLQ+DRSALIAF++ N ALP +ERHVWE+ L+ DGSV +Q++DRIVD KSL+ LL+ ATR VVNN+LV GGP+ + T+R+ YWVF++DG+LTTIS FKGGVG EYLWTEDAAL PS DW RRQ DPRRA++DPRT ALW+ EE+ + E AV
Sbjct: 90 APISNLSAQLQMDRSALIAFSEMNKALPVTERHVWERPLENGDGSVRIQKMDRIVDIKSLEYLLRTKATRNVVNNILVSTGGPKLEIPPTLRRKYWVFIKDGELTTISKDFKGGVGYEYLWTEDAALSLPSTDWKLPVRRQTDPRRAYVDPRTNALWLPEEDQTRQAVEAAV 261
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: UPI0000161E56 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E56) HSP 1 Score: 174 bits (442), Expect = 4.410e-46 Identity = 95/180 (52.78%), Postives = 121/180 (67.22%), Query Frame = 1
Query: 256 KVAHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWVLEEEVCEREEERAVPQEGGG 795
K+ M SAQLQ+DRSALI F K NMALPES+R+ W++ D V + D IVD +SL+ LL N T++VV+N+LV GGP N+ +T+R YWVF++DGKL T+S+ F+ GVG+EYLWTEDA L PS DW N +R+ DPRR H+DP T LWV E CE E+ AVP G
Sbjct: 92 KLVEMEKRSAQLQIDRSALIKFVKMNMALPESKRYTWKRVGNTADKKVKI--FDSIVDGRSLECLLLNPITKSVVDNILVPDGGPVLNITNTLRTKYWVFIKDGKLVTLSSDFRDGVGSEYLWTEDAFLCAPSRDWKNPIKRENDPRRHHVDPLTEVLWVPE---CE--EKHAVPDSNNG 264
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: D8LPI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI0_ECTSI) HSP 1 Score: 159 bits (403), Expect = 3.780e-40 Identity = 82/162 (50.62%), Postives = 110/162 (67.90%), Query Frame = 1
Query: 250 EVKVAHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWV 735
+ ++ M+ SAQLQLDRSALI F K N++LP SER+ W++ D + + D I D SLDSLL + T++VV+N+LV GGP N+ T++K YWVF++DGKL T+S+ F+ GVG EYLWT+DA L PS+DW + Q DPRR H+DP T LWV
Sbjct: 84 DARLVKMQKRSAQLQLDRSALIKFGKMNLSLPVSERYTWKRFGNGADQTA--KTFDSICDGPSLDSLLLDPKTKSVVDNILVPDGGPVLNINHTVKKKYWVFIKDGKLVTLSSDFRDGVGAEYLWTDDAFLGAPSSDWKYPFKFQNDPRRLHVDPATGVLWV 243 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig87.128.1 >prot_P-littoralis_Contig87.128.1 ID=prot_P-littoralis_Contig87.128.1|Name=mRNA_P-littoralis_Contig87.128.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=343bp MQKNYKDIRKSQDRVTKLEERVLQLETIVASLRSSDPSSSSSSTPSSSPPback to top mRNA from alignment at P-littoralis_Contig87:226700..227731+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig87.128.1 ID=mRNA_P-littoralis_Contig87.128.1|Name=mRNA_P-littoralis_Contig87.128.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1032bp|location=Sequence derived from alignment at P-littoralis_Contig87:226700..227731+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig87:226700..227731+ >mRNA_P-littoralis_Contig87.128.1 ID=mRNA_P-littoralis_Contig87.128.1|Name=mRNA_P-littoralis_Contig87.128.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1029bp|location=Sequence derived from alignment at P-littoralis_Contig87:226700..227731+ (Pylaiella littoralis U1_48)back to top |