mRNA_P-littoralis_Contig87.128.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.128.1
Unique NamemRNA_P-littoralis_Contig87.128.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: A0A6H5JHU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHU3_9PHAE)

HSP 1 Score: 390 bits (1002), Expect = 4.180e-130
Identity = 278/322 (86.34%), Postives = 290/322 (90.06%), Query Frame = 1
Query:   67 VLQLETIVASLRSSDPSSXXXXXXXXXXXXXQSEKVVYKPRPRPTSKSSSTKSAPVQQTTNEVKVAHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWVLEEEVCEREEERAVPQEGGGDGDXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXXXXXGDNNXXXXXXXXXXXESGRVDEPVQKDGVGEGGAES 1032
            +LQLETIVASLRSSDPS XXXXXXXXXXXXXQS+KVVYKPRPRPTSKSSSTKSAPVQQTTNE+KVAHMRSVSAQLQLDR+ALIAFNKKNMALPESERHVW+KR+K+KDGSVVVQRLDRIVDN SLD LL+N+A RAVVN MLV  GGPE +M STIR  Y VFLRDGKLTTISAQFKGGVGTEYLWTEDAAL RPSADWMNGTRR+MDPRRA  +PRTMALWV EEEVCE EEE AVPQEGGGDGD  XXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXX          XXXXXESGRVDEPVQKDGVGEGGAES
Sbjct:  118 MLQLETIVASLRSSDPSXXXXXXXXXXXXXXQSKKVVYKPRPRPTSKSSSTKSAPVQQTTNEMKVAHMRSVSAQLQLDRTALIAFNKKNMALPESERHVWDKRVKRKDGSVVVQRLDRIVDNASLDCLLRNDALRAVVNGMLVGDGGPELSMTSTIRTKYRVFLRDGKLTTISAQFKGGVGTEYLWTEDAALPRPSADWMNGTRRRMDPRRADAEPRTMALWVPEEEVCEGEEEGAVPQEGGGDGDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXESGRVDEPVQKDGVGEGGAES 429          
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: A0A6H5KWG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWG7_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 2.450e-104
Identity = 223/317 (70.35%), Postives = 234/317 (73.82%), Query Frame = 1
Query:   82 TIVASLRSSDPSSXXXXXXXXXXXXXQSEKVVYKPRPRPTSKSSSTKSAPVQQTTNEVKVAHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWVLEEEVCEREEERAVPQEGGGDGDXXXXXXXXXXXXXXXXXXXDGXXXXXXXXXXXXXXXXXXXGDNNXXXXXXXXXXXESGRVDEPVQKDGVGEGGAES 1032
            TIV+SLRSSDPSS XXXXXXXXXXXX        P             +P Q +TNE KVAHM+ +SA+LQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLD LL+N+ATRAVVNNMLVDKGGPERNMKSTIR TYWVFLRDGKLTTIS QFKGGVGTEYLWTEDAALRRPSADWMN TRRQMDPRRAHIDPRTMALWV              P++   DG+                   DG    XXXXXXXXXXXXXXX             XXESGRVDEPVQKDGVGEGGAES
Sbjct:   65 TIVSSLRSSDPSSSXXXXXXXXXXXXXXXXXXXXPTEF---------HSPKQPSTNEEKVAHMQQLSAKLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDCLLRNDATRAVVNNMLVDKGGPERNMKSTIRTTYWVFLRDGKLTTISEQFKGGVGTEYLWTEDAALRRPSADWMNDTRRQMDPRRAHIDPRTMALWV--------------PKKNDDDGN-------------------DGNEGDXXXXXXXXXXXXXXX-------------XXESGRVDEPVQKDGVGEGGAES 326          
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: A0A6H5JX91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX91_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 5.700e-59
Identity = 105/172 (61.05%), Postives = 132/172 (76.74%), Query Frame = 1
Query:  262 AHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWVLEEEVCEREEERAV 777
            A + ++SAQLQ+DRSALIAF++ N ALP +ERHVWE+ L+  DGSV +Q++DRIVD KSL+ LL+  ATR VVNN+LV  GGP+  +  T+R+ YWVF++DG+LTTIS  FKGGVG EYLWTEDAAL  PS DW    RRQ DPRRA++DPRT ALW+ EE+   +  E AV
Sbjct:   90 APISNLSAQLQMDRSALIAFSEMNKALPVTERHVWERPLENGDGSVRIQKMDRIVDIKSLEYLLRTKATRNVVNNILVSTGGPKLEIPPTLRRKYWVFIKDGELTTISKDFKGGVGYEYLWTEDAALSLPSTDWKLPVRRQTDPRRAYVDPRTNALWLPEEDQTRQAVEAAV 261          
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: UPI0000161E56 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E56)

HSP 1 Score: 174 bits (442), Expect = 4.410e-46
Identity = 95/180 (52.78%), Postives = 121/180 (67.22%), Query Frame = 1
Query:  256 KVAHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWVLEEEVCEREEERAVPQEGGG 795
            K+  M   SAQLQ+DRSALI F K NMALPES+R+ W++     D  V +   D IVD +SL+ LL N  T++VV+N+LV  GGP  N+ +T+R  YWVF++DGKL T+S+ F+ GVG+EYLWTEDA L  PS DW N  +R+ DPRR H+DP T  LWV E   CE  E+ AVP    G
Sbjct:   92 KLVEMEKRSAQLQIDRSALIKFVKMNMALPESKRYTWKRVGNTADKKVKI--FDSIVDGRSLECLLLNPITKSVVDNILVPDGGPVLNITNTLRTKYWVFIKDGKLVTLSSDFRDGVGSEYLWTEDAFLCAPSRDWKNPIKRENDPRRHHVDPLTEVLWVPE---CE--EKHAVPDSNNG 264          
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Match: D8LPI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI0_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 3.780e-40
Identity = 82/162 (50.62%), Postives = 110/162 (67.90%), Query Frame = 1
Query:  250 EVKVAHMRSVSAQLQLDRSALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLLKNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGGVGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWV 735
            + ++  M+  SAQLQLDRSALI F K N++LP SER+ W++     D +   +  D I D  SLDSLL +  T++VV+N+LV  GGP  N+  T++K YWVF++DGKL T+S+ F+ GVG EYLWT+DA L  PS+DW    + Q DPRR H+DP T  LWV
Sbjct:   84 DARLVKMQKRSAQLQLDRSALIKFGKMNLSLPVSERYTWKRFGNGADQTA--KTFDSICDGPSLDSLLLDPKTKSVVDNILVPDGGPVLNINHTVKKKYWVFIKDGKLVTLSSDFRDGVGAEYLWTDDAFLGAPSSDWKYPFKFQNDPRRLHVDPATGVLWV 243          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JHU3_9PHAE4.180e-13086.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWG7_9PHAE2.450e-10470.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX91_9PHAE5.700e-5961.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0000161E564.410e-4652.78hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
D8LPI0_ECTSI3.780e-4050.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:226700..227731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1032
Hectar predicted targeting categoryother localisation
Exons1
Cds size1029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791744.944744-UTR-P-littoralis_Contig87:226699..2267021680791744.944744-UTR-P-littoralis_Contig87:226699..226702Pylaiella littoralis U1_48UTRP-littoralis_Contig87 226700..226702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791744.9597602-CDS-P-littoralis_Contig87:226702..2277311680791744.9597602-CDS-P-littoralis_Contig87:226702..227731Pylaiella littoralis U1_48CDSP-littoralis_Contig87 226703..227731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.128.1prot_P-littoralis_Contig87.128.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 226703..227731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.128.1

>prot_P-littoralis_Contig87.128.1 ID=prot_P-littoralis_Contig87.128.1|Name=mRNA_P-littoralis_Contig87.128.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=343bp
MQKNYKDIRKSQDRVTKLEERVLQLETIVASLRSSDPSSSSSSTPSSSPP
PPQSEKVVYKPRPRPTSKSSSTKSAPVQQTTNEVKVAHMRSVSAQLQLDR
SALIAFNKKNMALPESERHVWEKRLKKKDGSVVVQRLDRIVDNKSLDSLL
KNNATRAVVNNMLVDKGGPERNMKSTIRKTYWVFLRDGKLTTISAQFKGG
VGTEYLWTEDAALRRPSADWMNGTRRQMDPRRAHIDPRTMALWVLEEEVC
EREEERAVPQEGGGDGDDSGSSSDSSSDSSSDSSDDDGNDGNDGNDGNGN
DGNDGNEGDNNGDNNGDNNGDNESGRVDEPVQKDGVGEGGAES
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mRNA from alignment at P-littoralis_Contig87:226700..227731+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.128.1 ID=mRNA_P-littoralis_Contig87.128.1|Name=mRNA_P-littoralis_Contig87.128.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1032bp|location=Sequence derived from alignment at P-littoralis_Contig87:226700..227731+ (Pylaiella littoralis U1_48)
AACATGCAGAAGAATTACAAGGACATCAGGAAGTCGCAAGATCGTGTGAC CAAGCTCGAGGAGCGGGTTCTGCAGCTGGAGACGATCGTCGCTTCGCTCA GGTCGTCGGATCCATCGTCATCGTCGTCGTCTACACCATCGTCATCGCCA CCGCCACCCCAATCAGAGAAGGTCGTGTACAAGCCGCGGCCTCGTCCGAC CTCTAAGTCTTCGTCAACTAAATCTGCACCCGTGCAGCAAACCACGAACG AGGTGAAGGTGGCGCACATGCGGAGCGTGTCGGCGCAGCTCCAGCTCGAT CGTTCGGCGCTGATCGCCTTCAACAAGAAAAACATGGCGTTGCCCGAGAG CGAGAGGCACGTCTGGGAGAAGAGGCTGAAGAAGAAGGACGGCAGCGTCG TCGTCCAGCGGTTGGACAGGATCGTCGACAACAAGAGCCTCGATAGTTTG CTGAAGAACAACGCTACGAGGGCCGTGGTCAACAACATGCTGGTCGACAA AGGCGGACCGGAGCGCAACATGAAGTCGACGATCCGCAAAACGTACTGGG TGTTTCTCAGAGACGGCAAGCTCACCACGATCAGCGCACAGTTCAAGGGT GGCGTCGGGACCGAGTACCTGTGGACAGAGGACGCCGCGCTCCGACGGCC GTCCGCCGACTGGATGAATGGCACGAGGCGCCAAATGGATCCGCGCAGGG CCCATATCGACCCTCGGACCATGGCGCTGTGGGTCCTCGAAGAAGAAGTT TGTGAGAGGGAGGAGGAACGAGCCGTGCCGCAGGAGGGGGGTGGCGACGG AGACGACAGCGGCAGTTCGAGTGACAGCTCGAGTGACAGCTCGAGTGACA GCAGCGACGACGACGGCAACGACGGCAACGACGGCAACGACGGCAACGGC AACGACGGCAACGACGGCAACGAAGGCGACAACAACGGCGACAACAACGG CGACAACAACGGCGACAACGAGAGCGGGCGTGTCGATGAACCTGTCCAGA AGGATGGTGTTGGCGAGGGTGGTGCAGAGAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig87:226700..227731+

>mRNA_P-littoralis_Contig87.128.1 ID=mRNA_P-littoralis_Contig87.128.1|Name=mRNA_P-littoralis_Contig87.128.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1029bp|location=Sequence derived from alignment at P-littoralis_Contig87:226700..227731+ (Pylaiella littoralis U1_48)
ATGCAGAAGAATTACAAGGACATCAGGAAGTCGCAAGATCGTGTGACCAA
GCTCGAGGAGCGGGTTCTGCAGCTGGAGACGATCGTCGCTTCGCTCAGGT
CGTCGGATCCATCGTCATCGTCGTCGTCTACACCATCGTCATCGCCACCG
CCACCCCAATCAGAGAAGGTCGTGTACAAGCCGCGGCCTCGTCCGACCTC
TAAGTCTTCGTCAACTAAATCTGCACCCGTGCAGCAAACCACGAACGAGG
TGAAGGTGGCGCACATGCGGAGCGTGTCGGCGCAGCTCCAGCTCGATCGT
TCGGCGCTGATCGCCTTCAACAAGAAAAACATGGCGTTGCCCGAGAGCGA
GAGGCACGTCTGGGAGAAGAGGCTGAAGAAGAAGGACGGCAGCGTCGTCG
TCCAGCGGTTGGACAGGATCGTCGACAACAAGAGCCTCGATAGTTTGCTG
AAGAACAACGCTACGAGGGCCGTGGTCAACAACATGCTGGTCGACAAAGG
CGGACCGGAGCGCAACATGAAGTCGACGATCCGCAAAACGTACTGGGTGT
TTCTCAGAGACGGCAAGCTCACCACGATCAGCGCACAGTTCAAGGGTGGC
GTCGGGACCGAGTACCTGTGGACAGAGGACGCCGCGCTCCGACGGCCGTC
CGCCGACTGGATGAATGGCACGAGGCGCCAAATGGATCCGCGCAGGGCCC
ATATCGACCCTCGGACCATGGCGCTGTGGGTCCTCGAAGAAGAAGTTTGT
GAGAGGGAGGAGGAACGAGCCGTGCCGCAGGAGGGGGGTGGCGACGGAGA
CGACAGCGGCAGTTCGAGTGACAGCTCGAGTGACAGCTCGAGTGACAGCA
GCGACGACGACGGCAACGACGGCAACGACGGCAACGACGGCAACGGCAAC
GACGGCAACGACGGCAACGAAGGCGACAACAACGGCGACAACAACGGCGA
CAACAACGGCGACAACGAGAGCGGGCGTGTCGATGAACCTGTCCAGAAGG
ATGGTGTTGGCGAGGGTGGTGCAGAGAGT
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