mRNA_P-littoralis_Contig87.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig87.18.1
Unique NamemRNA_P-littoralis_Contig87.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig87.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig87contigP-littoralis_Contig87:52782..53314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size533
Hectar predicted targeting categorysignal anchor
Exons1
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791742.7970753-CDS-P-littoralis_Contig87:52781..533121680791742.7970753-CDS-P-littoralis_Contig87:52781..53312Pylaiella littoralis U1_48CDSP-littoralis_Contig87 52782..53312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig87.18.1prot_P-littoralis_Contig87.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig87 52782..53312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig87.18.1

>prot_P-littoralis_Contig87.18.1 ID=prot_P-littoralis_Contig87.18.1|Name=mRNA_P-littoralis_Contig87.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
SAAVVLCATARVLLPVLLSWRGAPLALESQRVRPLRRPWTPRLPAPIAGT
RLPLWKERAVGSSPIWLPLLLMPLWILLFSVTGLRQQQNRLSPVFHARPV
VLGVLAASPPKHWHKHKHSTRLAFVEMNHKPAGVRAIFWRPPGLEQARQR
QPPLAPPQQRQEAFQPGVSNRQRDGRS
back to top

mRNA from alignment at P-littoralis_Contig87:52782..53314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig87.18.1 ID=mRNA_P-littoralis_Contig87.18.1|Name=mRNA_P-littoralis_Contig87.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=533bp|location=Sequence derived from alignment at P-littoralis_Contig87:52782..53314+ (Pylaiella littoralis U1_48)
AGCGCTGCTGTTGTGCTCTGTGCTACAGCACGTGTGCTGCTACCAGTGCT
GTTGTCTTGGCGTGGTGCGCCCCTGGCACTTGAGTCTCAACGGGTGCGCC
CGTTGAGAAGACCATGGACCCCAAGGCTCCCAGCGCCCATAGCCGGAACC
CGACTGCCATTGTGGAAGGAGCGGGCGGTGGGATCCTCCCCCATTTGGCT
GCCTCTGCTGCTGATGCCTCTGTGGATCCTGTTGTTCTCAGTTACCGGGC
TCCGGCAGCAGCAGAACCGGCTCTCACCGGTGTTTCACGCACGACCAGTA
GTACTAGGGGTACTTGCAGCGTCTCCCCCCAAACATTGGCACAAGCACAA
GCATTCCACGCGTCTGGCGTTCGTAGAAATGAACCACAAGCCGGCTGGCG
TTCGCGCAATTTTTTGGCGGCCGCCGGGGTTGGAGCAGGCCAGGCAACGA
CAACCACCATTGGCACCACCTCAACAGCGCCAGGAAGCATTTCAACCGGG
AGTGTCCAACAGGCAGCGAGACGGTCGGTCCCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig87:52782..53314+

>mRNA_P-littoralis_Contig87.18.1 ID=mRNA_P-littoralis_Contig87.18.1|Name=mRNA_P-littoralis_Contig87.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig87:52782..53314+ (Pylaiella littoralis U1_48)
AGCGCTGCTGTTGTGCTCTGTGCTACAGCACGTGTGCTGCTACCAGTGCT
GTTGTCTTGGCGTGGTGCGCCCCTGGCACTTGAGTCTCAACGGGTGCGCC
CGTTGAGAAGACCATGGACCCCAAGGCTCCCAGCGCCCATAGCCGGAACC
CGACTGCCATTGTGGAAGGAGCGGGCGGTGGGATCCTCCCCCATTTGGCT
GCCTCTGCTGCTGATGCCTCTGTGGATCCTGTTGTTCTCAGTTACCGGGC
TCCGGCAGCAGCAGAACCGGCTCTCACCGGTGTTTCACGCACGACCAGTA
GTACTAGGGGTACTTGCAGCGTCTCCCCCCAAACATTGGCACAAGCACAA
GCATTCCACGCGTCTGGCGTTCGTAGAAATGAACCACAAGCCGGCTGGCG
TTCGCGCAATTTTTTGGCGGCCGCCGGGGTTGGAGCAGGCCAGGCAACGA
CAACCACCATTGGCACCACCTCAACAGCGCCAGGAAGCATTTCAACCGGG
AGTGTCCAACAGGCAGCGAGACGGTCGGTCC
back to top