mRNA_P-littoralis_Contig866.14.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig866.14.3
Unique NamemRNA_P-littoralis_Contig866.14.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 3.540e-54
Identity = 130/335 (38.81%), Postives = 175/335 (52.24%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTCTVRTAVS-PEKLRYTVVLAVRGDGQKVRPRIIYKGNPF--PVVRA-----------------PPRQADE----------LRLPGWRHQPRGAEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 819
            M KLL   P   GGM +  +P +   F+ + N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  L NMDQTP+Q EMP +TT+EKTG    R +    EK R+T+VLAV  DG+KV PRII+KG PF  P V                   P  +A            ++   W  Q     W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:    1 MNKLLELKPNALGGMSANAKPTEALAFKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERG 334          
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 3.770e-54
Identity = 132/335 (39.40%), Postives = 176/335 (52.54%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTCTVRTAVS-PEKLRYTVVLAVRGDGQKVRPRIIYKGNPF--PVVRA-----------------PPRQADE----------LRLPGWRHQPRGAEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 819
            M KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E                               +F  L NMDQTP+Q E+P +TT+EKTG    R +    EK R+T+VLAV  DG+KV PRII+KG PF  P V                   P  +A            ++   W  Q     W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:    1 MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERG 334          
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.790e-52
Identity = 130/337 (38.58%), Postives = 174/337 (51.63%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTCTVR--TAVSPEKLRYTVVLAVRGDGQKVRPRIIYKGNPF--PVVRAPPRQADELRLP---------------------------GWRHQPRGAEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 819
            VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTG    R  T    EK R+T+VLAV  DG+KV PRII++G PF  P V    +     + P                            W  Q     W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:  194 VMNKLLELKPDALGGMPANAKPEEAIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERG 529          
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 5.860e-50
Identity = 132/344 (38.37%), Postives = 175/344 (50.87%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTCTVRTAVS-PEKLRYTVVLAVRGDGQKVRPRIIYKGNPF--PVVRA-----------------PPRQADE----------LRLPGWRHQPRGAEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 819
            VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+E TG    R +    EK R+T+VLAV  DG+ V P II+KG PF  P V                   P  +A            ++   W  Q     W+   +        M RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG
Sbjct:  154 VMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERG 496          
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.570e-49
Identity = 130/328 (39.63%), Postives = 170/328 (51.83%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTCTVRTAVS-PEKLRYTVVLAVRGDGQKVRPRIIYKGNPF--PVVRAP-----PRQ---------ADELR----------------------LP----GWRHQPRGAEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 762
            VM KLL   P   GGM +  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+EKTG    R +    EK R+T+VLAV  DG+KV PRII+KG PF  P V        PR+         A+  R                      +P     W  Q     W+   +  RP + S   QRP +LVLDDF+CH++E F   L   AKT V+ + GGLT + QPLDR +NK+ KR +R +YT+
Sbjct:  182 VMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGEEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTA 508          
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.480e-46
Identity = 124/342 (36.26%), Postives = 164/342 (47.95%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGT-----------CTVRTAVSP----------------EKLRYTVVLAVRGDGQKVRPRIIYKGNPFPVVRAP------------------PRQADELRLP-----------GWRHQPRGAEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 762
            VM KLL   P   GG+ ++ +PE+   F+ +F +WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EKTG            C +RT + P                EK R+T+ LAV  DG KV  RII+KG PF     P                  P    +  LP            W        W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:   87 VMNKLLELKPDTLGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427          
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.810e-45
Identity = 120/315 (38.10%), Postives = 157/315 (49.84%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTCTVRTAVS-PEKLRYTVVLAVRGDGQKVRPRIIYKGNPFPVVRAP------------------PRQADELRLP-----------GWRHQPRGAEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 762
            M KLL   P   GG+ ++ +PE+      +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+E TG    R A    EK R+T+ LAV  DG+KV  RII+KG PF     P                  P    +  LP            W        W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGL P+ QPLDR +NK+ KR +R  YT+
Sbjct:  155 MNKLLELKPDALGGLAAKPKPEEALALNSKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468          
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 7.010e-40
Identity = 110/284 (38.73%), Postives = 141/284 (49.65%), Query Frame = 1
Query:   82 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTCTVRTAVS-PEKLRYTVVLAVRGDGQKVRPRIIYKGNPFPVVRAPPRQADELRLPG-----------------------------WRHQPRGAEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVR 747
            F+ +F  WY+ F +RH FSIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G    R +    EK R+T  LAV  DG KV  RII+KG PF       R+ +     G                             W        W+++ +  RP  GS  + QR S+LVLDDFRCHR E F K L     T V+++ GGLTP+ QPLDR +NKE KR +R
Sbjct:   96 FRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMR 378          
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.510e-39
Identity = 112/318 (35.22%), Postives = 150/318 (47.17%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTCTVRTAVSPEKLRYTVVLAVRGDGQKVRPRIIYKGNPFPVVRAP--------------------PRQADELRLPGWRHQPRGAE------------WVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 762
            VM KLL   P   GG+ ++ +PE+   F+ +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EK G    R A    + R     +     +  R R+          R P                    PR A     P W   P G +            W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  149 VMNKLLELKPDALGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLEKAGAKDARIATGAGEKRRNASRSAWLPRRMARSRLASSSRVRLSFRLPRPGXXXXXXXXXXXXXXXYFPRTAPSTGSP-WEACPSGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 464          
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.050e-37
Identity = 120/326 (36.81%), Postives = 157/326 (48.16%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTCTVRTAVS-PEKLRYTVVLAVRGDGQKVRPRIIYKGNPFPVVRAPPRQADELRLPGWRHQPR----GAE---------------------------------WVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 768
            VM KLL   P   GG+ +    E+   F+ +F  WY+RF +RH  SIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G    R +    EK R+T+ LAV  DG KV  RII+KG PF     PP  A      G   QPR     AE                                 W+++ +  RP  GS  + QR S+LVLDDFR +              T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++
Sbjct:  173 VMNKLLELKPDALGGLTAAASAEETLAFRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPF----IPPSTARR----GKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYM 475          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig866.14.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK2_9PHAE3.540e-5438.81DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE3.770e-5439.40DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE2.790e-5238.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE5.860e-5038.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE1.570e-4939.63DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE2.480e-4636.26DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.810e-4538.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K583_9PHAE7.010e-4038.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KYG9_9PHAE2.510e-3935.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE1.050e-3736.81DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig866contigP-littoralis_Contig866:63525..65168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7668.SPU_015022-tr
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size929
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.91e-33
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3BMCH@33208|Metazoa,3CYY1@33213|Bilateria
Descriptionpogo transposable element with KRAB domain
Cds size834
COG categoryBD
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig866.14.3prot_P-littoralis_Contig866.14.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig866 63528..65076 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791740.3874109-UTR-P-littoralis_Contig866:63524..635271680791740.3874109-UTR-P-littoralis_Contig866:63524..63527Pylaiella littoralis U1_48UTRP-littoralis_Contig866 63525..63527 +
1680791740.463388-UTR-P-littoralis_Contig866:65076..651681680791740.463388-UTR-P-littoralis_Contig866:65076..65168Pylaiella littoralis U1_48UTRP-littoralis_Contig866 65077..65168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791740.401155-CDS-P-littoralis_Contig866:63527..637731680791740.401155-CDS-P-littoralis_Contig866:63527..63773Pylaiella littoralis U1_48CDSP-littoralis_Contig866 63528..63773 +
1680791740.4112673-CDS-P-littoralis_Contig866:63875..639611680791740.4112673-CDS-P-littoralis_Contig866:63875..63961Pylaiella littoralis U1_48CDSP-littoralis_Contig866 63876..63961 +
1680791740.4242563-CDS-P-littoralis_Contig866:64177..642021680791740.4242563-CDS-P-littoralis_Contig866:64177..64202Pylaiella littoralis U1_48CDSP-littoralis_Contig866 64178..64202 +
1680791740.4335592-CDS-P-littoralis_Contig866:64515..646021680791740.4335592-CDS-P-littoralis_Contig866:64515..64602Pylaiella littoralis U1_48CDSP-littoralis_Contig866 64516..64602 +
1680791740.4441345-CDS-P-littoralis_Contig866:64652..647301680791740.4441345-CDS-P-littoralis_Contig866:64652..64730Pylaiella littoralis U1_48CDSP-littoralis_Contig866 64653..64730 +
1680791740.4541302-CDS-P-littoralis_Contig866:64764..650761680791740.4541302-CDS-P-littoralis_Contig866:64764..65076Pylaiella littoralis U1_48CDSP-littoralis_Contig866 64765..65076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig866.14.3

>prot_P-littoralis_Contig866.14.3 ID=prot_P-littoralis_Contig866.14.3|Name=mRNA_P-littoralis_Contig866.14.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=278bp
MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKT
SVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALLYNMDQTPIQAEMP
PDTTVEKTGTCTVRTAVSPEKLRYTVVLAVRGDGQKVRPRIIYKGNPFPV
VRAPPRQADELRLPGWRHQPRGAEWVTQDFMRRPGSTSRDQRPSVLVLDD
FRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRAR
YTSWIRDNYGRSGQKVTAPSRGWSRRG*
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mRNA from alignment at P-littoralis_Contig866:63525..65168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig866.14.3 ID=mRNA_P-littoralis_Contig866.14.3|Name=mRNA_P-littoralis_Contig866.14.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=1644bp|location=Sequence derived from alignment at P-littoralis_Contig866:63525..65168+ (Pylaiella littoralis U1_48)
GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC GTCCCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACG CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAG ACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGC ATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCG TTCTCTTGGAGAGGGAGCCCACAGCGAAGGACGGAGGGACCGTTGAGATC GAGATGGACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTCAGGGCAA GATCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTGAGA TGCCGCCGGACACCACGGTGGAGAAGACTGGTACCTGGTACGAAGAGCGC TTGCATCACGACAGGAGGTGAGACGGTGTACTAAAGGTATTTCGATTGTT GAAATTCAGTTCAAACCAACATGGTGGAGATTTTCTGACGATGGAACAAG CGGGGAATTACAAATTTGCCGACGGCGGAAAAACGGGGAATTATAATATT TTGCGTTGCTTCTGCCGTCACGTGCACGCTTTCGTTCTTCTATTGCCTGC AAGTACGGTACGTACTGCTGTATCGCCTGTCCCTTCGAACTACCGGTACA CAGCGATGAAATTATTCATATGGTATTCCGCTGAAGTATTTTTTTTAATA TACATATGTTTTGGGGGGCAATATATATTTTACCGTATACACCGGAGTTT GTTTTTATTTTACTTTTTATGTTGTGGTAGGCATTACACCCCAGGAGTTA AAGGTGTGTGTTTTTTATTATTATTTATTTTTTGTTTGTTGTGGCAGGCA ATACGGTTAATAATTGTACTGCTTTGCGGAGTATTTTCTTTTAACACAAT TTCCTTTGTTTGCATACGCCCCAATTTTCGCACCAGGCAAGGAGAAGCTG CGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTGCGGCC GCGCATCATCTACAAGGGGAACCCTTTTGTCGGGGGTACCAACAAGTCAG GCTCAGCCAAGAAGCCTGGCAAGAACAGCCTGTCGTACGAGCACCTCCCA GACAAGCGGACGAGCTTCGGCTACCCGGCTGGCGGCATCAGCCTCGGGGT GCAGAAGTCGTCGTGGTGCGACGGCACCTAGTCCGACGAGTGGGTAACCC AGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGTCCCAGC GTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTTCCAAAA GAAGCTAATGGACCTGGCCAAGACGCTGGTGGTGATGCTTGGTGGAGGGC TGACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAGTTCAAG CGAGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGGGCG CTCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGCTGGTCGCGACGTGGGT AAAGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGCTTCA AGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGACCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig866:63525..65168+

>mRNA_P-littoralis_Contig866.14.3 ID=mRNA_P-littoralis_Contig866.14.3|Name=mRNA_P-littoralis_Contig866.14.3|organism=Pylaiella littoralis U1_48|type=CDS|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig866:63525..65168+ (Pylaiella littoralis U1_48)
ATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCCGTC
CCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACGCCT
GGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAGACG
AGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGCATT
CATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCATCT
TCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTGAGATGCCG
CCGGACACCACGGTGGAGAAGACTGGTACCTGTACGGTACGTACTGCTGT
ATCGCCTGAGAAGCTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATG
GACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCTTTTCCTGTC
GTACGAGCACCTCCCAGACAAGCGGACGAGCTTCGGCTACCCGGCTGGCG
GCATCAGCCTCGGGGTGCAGAATGGGTAACCCAGGACTTCATGCGCCGCC
CAGGGTCTACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGACGAC
TTCAGGTGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGC
CAAGACGCTGGTGGTGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGC
CGCTCGACCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGG
TACACCAGCTGGATCCGGGACAACTACGGGCGCTCGGGGCAGAAGGTGAC
CGCGCCGAGCAGGGGCTGGTCGCGACGTGGGTAA
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