mRNA_P-littoralis_Contig864.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig864.20.1
Unique NamemRNA_P-littoralis_Contig864.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig864.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig864contigP-littoralis_Contig864:106981..108088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size781
Hectar predicted targeting categoryother localisation
Exons3
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791738.9847786-UTR-P-littoralis_Contig864:106980..1071891680791738.9847786-UTR-P-littoralis_Contig864:106980..107189Pylaiella littoralis U1_48UTRP-littoralis_Contig864 106981..107189 -
1680791739.0268457-UTR-P-littoralis_Contig864:107780..1078591680791739.0268457-UTR-P-littoralis_Contig864:107780..107859Pylaiella littoralis U1_48UTRP-littoralis_Contig864 107781..107859 -
1680791739.0368485-UTR-P-littoralis_Contig864:107988..1080881680791739.0368485-UTR-P-littoralis_Contig864:107988..108088Pylaiella littoralis U1_48UTRP-littoralis_Contig864 107989..108088 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791738.9997435-CDS-P-littoralis_Contig864:107189..1074111680791738.9997435-CDS-P-littoralis_Contig864:107189..107411Pylaiella littoralis U1_48CDSP-littoralis_Contig864 107190..107411 -
1680791739.0127454-CDS-P-littoralis_Contig864:107609..1077801680791739.0127454-CDS-P-littoralis_Contig864:107609..107780Pylaiella littoralis U1_48CDSP-littoralis_Contig864 107610..107780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig864.20.1prot_P-littoralis_Contig864.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig864 107190..107780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig864.20.1

>prot_P-littoralis_Contig864.20.1 ID=prot_P-littoralis_Contig864.20.1|Name=mRNA_P-littoralis_Contig864.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MMARSMGMQMVPANSSGCYPPVGASPALANQVFGGVNAVPLAGGLMSPQG
GFIHAFAMSNTSFVSVVRVADCSFLGYRPPPQPRSDCERLRFKLHFNRQK
AGVRGCLYADELWPLHTCLNGVLCVSFLYR*
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mRNA from alignment at P-littoralis_Contig864:106981..108088-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig864.20.1 ID=mRNA_P-littoralis_Contig864.20.1|Name=mRNA_P-littoralis_Contig864.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1108bp|location=Sequence derived from alignment at P-littoralis_Contig864:106981..108088- (Pylaiella littoralis U1_48)
GTGCTGGAAAAAAGCGCTCGTCCACCACCGATCTCACGCCATCCCCGCCG
AGCACCAGGCGCAGTTCCTCCAGGAGGAAGCAGGCGCCGACAGTGGACAG
GTCAGGACCATTGCTTTTGCTAGTATCGAAAACACTTCGATGAGGGGCAG
GGTGGAAGAAATTTATTGCAGAGGTCGTAATACTCTTTTCACCCTCGTGA
CGTTCATCTCTTTGTTTCAATTTTTGTAGCGATCAAGACGCGGAGGCGAG
GCCAGGGACTGAGGAGAAGAAGCCTGCCTCAGGAGCGTCCGATGAGAACG
CGGTCGTGATGATGGCGAGATCGATGGGCATGCAGATGGTTCCGGCCAAC
AGCAGCGGCTGTTACCCGCCTGTCGGTGCCAGCCCGGCCCTGGCCAATCA
AGTTTTCGGGGGTGTCAATGCGGTGCCTCTCGCGGGCGGCTTGATGTCTC
CCCAGGGCGGATTTATTCACGCCTTTGCCCAGCCCGCCGGGGGTCACCCT
TTTTCGCAGGCGCAAGCCGGGCAACCCAGCGCTGTGCATCCCTTTGTGTA
CAGCTGAATCATCGTGTGGTGGCTGTTGCGGATAAACCCCGTTGGGTACG
CGGGGTGACCAATGTGTTGTGGCACACAGCAGTGGAGAGCGTGGCCATAT
TGTTTTTAGTTTCAGTTTTCAACACTTATGTCGAACACAAGTTTTGTTAG
TGTCGTGCGTGTCGCCGATTGTAGCTTTCTGGGCTACCGCCCACCTCCTC
AACCACGTAGCGATTGCGAGAGATTGCGTTTCAAATTGCATTTTAACAGG
CAAAAGGCGGGCGTTCGCGGATGTCTCTACGCCGATGAATTGTGGCCGCT
TCACACTTGCCTCAACGGAGTGCTCTGTGTCTCATTTTTGTATCGTTGAC
GAATGTTTACACCGGATTTTGACCCAGATGCTGTTGATTTGCGTGTGCAG
TAATAAATTTTGTCGGTGACCGGGCCGTGAAGGGGTCCTCGCAACCACTG
TTTTTGTGGTTTATTCTTTGTTCAACCGTCATTCGTCACCTTTCGACCTC
GAGGTGGCTGAGAGTACAGTTCATGACGACGAAGGGTTTGTACGTACTCA
CCAACCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig864:106981..108088-

>mRNA_P-littoralis_Contig864.20.1 ID=mRNA_P-littoralis_Contig864.20.1|Name=mRNA_P-littoralis_Contig864.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig864:106981..108088- (Pylaiella littoralis U1_48)
ATGATGGCGAGATCGATGGGCATGCAGATGGTTCCGGCCAACAGCAGCGG
CTGTTACCCGCCTGTCGGTGCCAGCCCGGCCCTGGCCAATCAAGTTTTCG
GGGGTGTCAATGCGGTGCCTCTCGCGGGCGGCTTGATGTCTCCCCAGGGC
GGATTTATTCACGCCTTTGCCATGTCGAACACAAGTTTTGTTAGTGTCGT
GCGTGTCGCCGATTGTAGCTTTCTGGGCTACCGCCCACCTCCTCAACCAC
GTAGCGATTGCGAGAGATTGCGTTTCAAATTGCATTTTAACAGGCAAAAG
GCGGGCGTTCGCGGATGTCTCTACGCCGATGAATTGTGGCCGCTTCACAC
TTGCCTCAACGGAGTGCTCTGTGTCTCATTTTTGTATCGTTGA
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