mRNA_P-littoralis_Contig863.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig863.10.1
Unique NamemRNA_P-littoralis_Contig863.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig863.10.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 4.860e-65
Identity = 150/306 (49.02%), Postives = 171/306 (55.88%), Query Frame = 1 
Query:  514 EESESEDEKLNVTAARRVSSKKPKCGGGDP*AKKLKKPITIDTDEKLSLNELVTDLEVGVTTTYDGRKISEEVNELAVEYVQSKLDRPEEEQSLLALIGQKGALTTEQRLTVDKMMRKPELGRLLRDIEASAPEGLHNRVFDVRVMLRPKDAGVVPHRDSINLKYDRTVSTRLAGPSQKPPLFFVKLMSRPDATPARGPYEPGEIVVPKVNGRIVVKGPNARGEEVRVVHGVGPGDVTSLTLVADYITTRKDGQPTSDEDRHSARKSVVAHT-TRAPPPGATVNPYADGLVWPENAPRTPGSRRAT 1428
            E+S+  +E   V AA   SSKKPKCGG +P A KLKKPI  DT+EKL+L ELVTDL  GV   YDGR++S+E+NEL  EY QSK DRP EEQSL ALIGQ GA TTEQRL+V  M  KPELG  + DIE SAPEGL N                                        KPP F VKLMS P A PA GPY P E  +PK NGR++VKGP ARGE                             Q T+  DR SAR+SVV    +R PP GA  NP+AD LV  + APRT GSR+AT
Sbjct:  123 EQSDQVEEDKEVPAANGRSSKKPKCGGRNPWAVKLKKPIIHDTEEKLTLAELVTDLNHGVAAGYDGRQMSDELNELVAEYAQSKADRPVEEQSLFALIGQDGAQTTEQRLSVAMMKGKPELGGFVGDIEQSAPEGLTN----------------------------------------KPPEFHVKLMSGPKAAPATGPYGPDEWHIPKENGRMIVKGPMARGE-----------------------------QATTRVDRDSARQSVVDRAESRMPPIGAPHNPFADSLVLSDTAPRTTGSRKAT 359
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BLAST of mRNA_P-littoralis_Contig863.10.1 vs. uniprot
Match: D7FUP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP9_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 5.240e-62
Identity = 113/150 (75.33%), Postives = 121/150 (80.67%), Query Frame = 1 
Query: 1000 LKYDRTVSTR-------LAGPSQKPPLFFVKLMSRPDATPARGPYEPGEIVVPKVNGRIVVKGPNARGEEVRVVHGVGPGDVTSLTLVADYITTRKDGQPTSDEDRHSARKSVVAHTTRAPPPGATVNPYADGLVWPENAPRTPGSRRAT 1428
            LK D T+ T        L    +KPP FFVKLM  PDA PARGPYE GEIVVPKV+G IVVKGPNARGE+VR VHGV PG+VTSLTLVADYITTR DGQ TSDEDR SARKSVVAHTTRA PPGAT++PYAD LVWPENAPRT GSR+AT
Sbjct:   51 LKKDITIDTEEELPLSELVTDLEKPPEFFVKLMKGPDAEPARGPYELGEIVVPKVHGLIVVKGPNARGEKVRAVHGVRPGNVTSLTLVADYITTRNDGQATSDEDRDSARKSVVAHTTRAAPPGATIDPYADRLVWPENAPRTTGSRKAT 200
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BLAST of mRNA_P-littoralis_Contig863.10.1 vs. uniprot
Match: A0A6H5JRU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU8_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 4.550e-50
Identity = 97/152 (63.82%), Postives = 108/152 (71.05%), Query Frame = 1 
Query:  979 PHRDSINLKYDRTVSTRLAGPSQKPPLFFVKLMSRPDATPARGPYEPGEIVVPKVNGRIVVKGPNARGEEVRVVHGVGP-GDVTSLTLVADYITT-RKDGQPTSDEDRHSARKSVVAHTTRAPPPGATVNPYADGLVWPENAPRTPGSRRAT 1428
            PHRD+INL+YDRT+ T L GPS   P FF++L   PDATPA GPYEPGEIV                GEEVR V GV P G  +S TL ADYITT R D QP SD+DR SARK VVAHTT+  PPGA+++PYAD LVWPENAPRTPGSRRAT
Sbjct:    3 PHRDNINLQYDRTIFTWLTGPSPNAPEFFIELTPGPDATPACGPYEPGEIV----------------GEEVRAVDGVRPRGVASSFTLGADYITTTRNDQQPVSDKDRDSARKLVVAHTTKPAPPGASISPYADRLVWPENAPRTPGSRRAT 138
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BLAST of mRNA_P-littoralis_Contig863.10.1 vs. uniprot
Match: D7G3R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R8_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.600e-45
Identity = 104/175 (59.43%), Postives = 125/175 (71.43%), Query Frame = 1 
Query:  388 ALSAQPVNSPQKSSAGQTV--RRSKRRLRIVDNYGDDSDYGLPEEESESEDEKLNVTAARRVSSKKPKCGGGDP*AKKLKKPITIDTDEKLSLNELVTDLEVGVTTTYDGRKISEEVNELAVEYVQSKLDRPEEEQSLLALIGQKGALTTEQRLTVDKMMRKPELGRLLRDIEAS 906
            A + +P  SP   + G+T    RS +RL++VDN GDDS + LPEEESE E     V AA+ VSSKKPKCGGG+P AKKLKK I +DTDEKL+L ELVTDL  GV  + D RK+S+E+NEL  EY QSK +RP E +SL ALIG+KGA TTEQRL+V  M  KPEL R + DIE S
Sbjct:   35 ASTRRPPFSPTSPNTGRTPPRARSTKRLQLVDNDGDDSVWSLPEEESEGE----QVPAAKGVSSKKPKCGGGNPWAKKLKKDIIVDTDEKLTLVELVTDLVSGVAESCDRRKMSQELNELVAEYEQSKANRPVEGRSLFALIGKKGAQTTEQRLSVANMKGKPELRRFILDIEES 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig863.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8P5_ECTSI4.860e-6549.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUP9_ECTSI5.240e-6275.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRU8_9PHAE4.550e-5063.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3R8_ECTSI2.600e-4559.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig863contigP-littoralis_Contig863:54245..58594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1428
Hectar predicted targeting categoryother localisation
Exons6
Cds size432
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig863.10.1prot_P-littoralis_Contig863.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig863 55059..57772 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791738.4367146-UTR-P-littoralis_Contig863:54244..544131680791738.4367146-UTR-P-littoralis_Contig863:54244..54413Pylaiella littoralis U1_48UTRP-littoralis_Contig863 54245..54413 +
1680791738.4562063-UTR-P-littoralis_Contig863:55053..550581680791738.4562063-UTR-P-littoralis_Contig863:55053..55058Pylaiella littoralis U1_48UTRP-littoralis_Contig863 55054..55058 +
1680791738.5432265-UTR-P-littoralis_Contig863:57772..585941680791738.5432265-UTR-P-littoralis_Contig863:57772..58594Pylaiella littoralis U1_48UTRP-littoralis_Contig863 57773..58594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791738.473485-CDS-P-littoralis_Contig863:55058..551271680791738.473485-CDS-P-littoralis_Contig863:55058..55127Pylaiella littoralis U1_48CDSP-littoralis_Contig863 55059..55127 +
1680791738.4865916-CDS-P-littoralis_Contig863:55922..560421680791738.4865916-CDS-P-littoralis_Contig863:55922..56042Pylaiella littoralis U1_48CDSP-littoralis_Contig863 55923..56042 +
1680791738.4960284-CDS-P-littoralis_Contig863:56666..567411680791738.4960284-CDS-P-littoralis_Contig863:56666..56741Pylaiella littoralis U1_48CDSP-littoralis_Contig863 56667..56741 +
1680791738.513651-CDS-P-littoralis_Contig863:57168..572761680791738.513651-CDS-P-littoralis_Contig863:57168..57276Pylaiella littoralis U1_48CDSP-littoralis_Contig863 57169..57276 +
1680791738.527532-CDS-P-littoralis_Contig863:57712..577721680791738.527532-CDS-P-littoralis_Contig863:57712..57772Pylaiella littoralis U1_48CDSP-littoralis_Contig863 57713..57772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig863.10.1

>prot_P-littoralis_Contig863.10.1 ID=prot_P-littoralis_Contig863.10.1|Name=mRNA_P-littoralis_Contig863.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MCSTPPKSGKRGGGVSNDGECDEIPLFGKGSPVVAQGVNGDDANDIDVDV
EGGGEDRQEEVEKSRASPTPGALSAQPVNSPQKSSAGQTVRRSKRRLRIV
DNYGDDSDYGLPEEESESEDEKLNVTAARRVSSKKPKCGGGDP*
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mRNA from alignment at P-littoralis_Contig863:54245..58594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig863.10.1 ID=mRNA_P-littoralis_Contig863.10.1|Name=mRNA_P-littoralis_Contig863.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4350bp|location=Sequence derived from alignment at P-littoralis_Contig863:54245..58594+ (Pylaiella littoralis U1_48)
CTCACATCTCCCACTCACTCACTCTCATCATCCCTGTCTCTTCCATTCTC
TTCTAGAGGTCACCTACAGTCCGTGTCTCATTCCCCTGCCCGGAGCTAGT
ACATATAGGGATCTCTTCACGTCAAAGGCGAATCGCTCGCTGTCTCTCCT
CTCTCTACCCTTCTCGCAGGTTTGTTCAAAGCCCTGTGCTCTGTACTCGT
ACTTGTGTCACAGGAACAGCCTGATGATGGTTCGGCGAGCAGATCTGTTG
ACGAGAATCACGAAGCTGGCACGTTGTAGCTGTCCCCAGACAGCAGACCG
GTGCCCACCATTCGAACGCAGCCTTTGATGCTAATCATCGTAGTATGTAG
CATACCTGGCACCGAGTTTATCATCTCCCACGTCTAGTCAAACTCCCCTC
GATCAATCATGGTCGGAGAGAGGTTGGTAACATACAGCAGTACACACAAA
CCCATGCTGGTGCTGTGGATCTACAGATCTACAGCAGTAGTACCGGTGGG
AGCATATATATATTTATACTGGTGAGGATTGGCGGAGGCGAAAATACCAA
GTATCAATTTTCGTAAATTTTAACACGACAAACAAGTACATAGTGGTTGG
TAGGAGTAGCTGCACGCAGTACACGACGGTGGATGCAGAAACAGAATGTA
CCAGATACTACATCCCTCGCAAGTATTGGCCTGGATTCAGCCGTCCTTCA
TGCATCAATAAACATTTACCTGTCCCCACGTCCCGTCTAAATTTGTTCAG
TCTCCCGGTCCCCTTCACTCAAATCATACCACTGCCGAATTATTACAATA
CTAATTCAGGATTGATGTGCTCCACACCCCCGAAATCGGGGAAGAGAGGC
GGCGGGGTGTCCAATGACGGAGAATGTGATGAGGTGAGAATTTTTACACG
CGACTTACCAAGCGAGGTGGCCTTACAAACTCAGAACAAGACGAACAGAG
GGGACGCTCGAAACGGGTTGTTTGTAGGTTGTTGTACACTGCTAGTATCC
ATCGACCCTAAATACTCCGGTACATCTTATTCACGTATGTTGAGAGCCAC
GTTGGTTCAAGACTAAGGCGTCTGATAAGCGAGATATGTATACCCCCAAA
TGTAGTCTATATTACATATTTTGACCCATCATGCCCGGTAGAACAGGCCG
AAGAGTAGACACGGCGGGAGACGAGGCAGCCATACTGTGTACCTTTGCAA
ATGATATCCGACACACCAAGTACCACAAACCAAAAATTATAATGAAATCC
CGCTTAAATGTCATAACCAACTCATACGATTTTCAAATTTCGGGAAAACA
GTTCAAACATTACCCCCCTCCTTTCACTCTCTCTGCCTCACTCTCCATCC
TTCTCGTGTCCAACGAAAAACAATGGTATATACTATACCAAGTAGCAAAG
AAAAGTTCAACAGTGAACGGCAAGAATGGTACGGTACGTTGTAGATTATT
CAAGGTCTCGAAGACTCACCCTGGGAATGGTGTCTGACATATATATCCCC
CACGACATTAATATGCATCGTTAAGTGGGTCAAGTCACGGCCACGTAAAC
GAAGTACTTCGTATTAACAATTGGGCGACATTTACACGCGTGTTTGGTAG
ATTTGCCCCCCGGTTGATGCACCCATGTCACTACCGCGACTATAACACCG
TCATTGCAAAACCACGACACACGCACAGATCCCGTTATTTGGGAAGGGCA
GCCCCGTGGTTGCCCAGGGCGTCAATGGAGATGACGCAAATGACATCGAC
GTGGACGTTGAGGGGGGTGGCGAGGACCGTCAGGAGGAGGTGGAGAAGGT
GAGACATCTGGGGTGTTTCTCTCATGCGACCTGTTTTGTTGGTGGCCGAT
CAAAGTGTTCGGATGTATTTCAATGTAGAAGATGGCGTGATGGATAGGTA
CGTACACGAATTCGCAGATATCTTCACGCTTAAATCGTCCAACACGCCTC
ACAAGGGAGTTCCATTTCAGATCGCTACCGCCCCCCCCCCCCCCCCTCAC
TCACTTTCACTCGGGCTCTCTGTTCGACATCTTCTGAAGAAATGAAAGTG
GTATTCTAAGCCATGTATGCCACGAGATGCCAGCGATATCTGAACGACGT
ACGTGGTGCGTGCTCGCAGCGTGTGTTTCCGCTGTCGTTGTTGTCTTCGA
TTTTCCCACCTCTTCGTGTATCAGCAAGACGGTGCCTGTCCCCTCAACCC
TAACGTGCAGTAGTGCTGGGTTGTTCGAGGTTAGCCTTTCGCTCATGGTG
TCATCCATCAACACCCAAAACTCCCGATATTCGATCGATCGCCCCTACCT
CGAGTACCTACCCCTCGGTAGACGCTCGTTCTGCCTTGAAATCGACTGTT
GTACAAAGCATTATGTTCTGTCTGTTCGATTCACTCGCCACTGTGCGTCG
TCCTGTTACACCCATGTTCCAGAGTCGAGCCTCGCCAACACCAGGAGCCT
TGAGCGCGCAACCGGTGAATAGTCCTCAGAAGTCTTCTGCCGGCCAGGTG
AAAACTGTTTGTTGTTGGAACCGCTGCGGATCGCCAACCGCTTTACGCGA
AGCACATGACCAATCCATGTAGACAGGTCTACAATTAGCTAGAGGCGTAT
CTTCATGTTGATACCTGCCAGTTCAATGCTGAAGTCACGCCTGATCTGTC
TGTGTCTGTCTCTCCCCATCCACTTCACACTCTCACACTCTCCACACATT
CACTCTTCGTCGTGGATCTCACGCCGAAAGAATGAAAGCTGTTATTTTTG
TGGCTCGAAAAAGAAAAGTATGCGATTAAACCTAGATATTCCGAGGAACA
CATGGTAAGAGTAAATTGTGAACAACGAGAGAAAATAGAGATATGCAGAA
ATGATCATCACGGGCCTTCACACACGCGCCCTCCTACCGACGTTGTCATA
CTCGTCGCGCTCCCACACGTGCAGACTGTCCGGAGGTCAAAGAGACGCCT
TCGTATCGTCGACAACTATGGCGACGACAGCGACTACGGTCTTCCGGAGG
AGGAAAGCGAAAGCGAGGACGAGAAGCTGAATGTGAGTACAGGCACCCGC
GATATCTAGATATCGGCACCTGGTACGTAAGTAACTGACGTCCATGTTCG
AGGCGAATCTTTCTCTTGGTTTTGCCAGCCTCAATATTGAAGTCACGCCT
GATCTGTCCGTGGCTGTCTCTCTCCCCCCCTCCGTTTCCACGCCCACATT
CGCACACTCGCCACACATTCGCCCTTCGTCGTGGATCTCACACCGAGAGG
ATGAAATCTAGTTTTTATGTGGCTCGAACAAACCCACACGATTGTGCGAG
AGGAAAGGTGTGCCATGAAATTGACTCGCCTTAACTGTGAGGTGGTCTCT
AGTACTGAGAGATCGAGAGAGTGAGCTAAACGAGCGATTCTATTGATGGG
ATGCAACGGATTGGTTGATAAATTCGATCTATTGAAGAATCGTAATCACT
CCCTTTCGCACACAACAGGTAACCGCGGCGAGGAGGGTGTCGTCCAAGAA
ACCAAAGTGTGGCGGAGGAGACCCGTAGGCGAAGAAGCTCAAGAAGCCCA
TCACCATAGACACGGACGAAAAGCTTTCTCTCAACGAGCTCGTCACAGAC
CTGGAGGTGGGTGTCACAACCACGTACGACGGCCGGAAGATCAGCGAAGA
GGTGAACGAACTGGCGGTGGAGTACGTGCAGTCGAAACTCGATCGTCCCG
AAGAAGAGCAGTCTCTTCTCGCACTCATAGGCCAGAAAGGTGCACTCACC
ACGGAGCAACGACTCACGGTAGACAAGATGATGAGGAAGCCAGAGCTGGG
AAGGCTCCTCCGTGACATCGAGGCGTCGGCGCCGGAGGGGCTCCACAACA
GAGTGTTCGATGTCCGTGTCATGCTCCGGCCGAAGGACGCGGGCGTGGTC
CCCCACCGAGACAGCATCAACCTGAAGTACGATCGGACAGTATCTACGCG
GCTGGCTGGCCCCTCTCAGAAGCCCCCGTTATTCTTCGTGAAGCTCATGT
CAAGACCAGACGCCACGCCTGCGCGCGGCCCTTACGAGCCCGGCGAGATT
GTCGTCCCCAAGGTCAACGGGCGGATTGTAGTGAAGGGGCCGAACGCCCG
GGGAGAGGAGGTACGAGTGGTCCATGGCGTCGGGCCCGGGGACGTGACAT
CCCTCACTCTCGTGGCGGACTACATTACAACCCGGAAGGATGGGCAACCT
ACCTCGGACGAGGACCGCCACAGTGCTCGCAAGTCGGTGGTCGCCCACAC
CACCAGGGCGCCTCCGCCTGGAGCAACCGTCAACCCCTACGCCGATGGGC
TTGTCTGGCCCGAGAATGCCCCGCGTACGCCGGGCTCACGTAGAGCAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig863:54245..58594+

>mRNA_P-littoralis_Contig863.10.1 ID=mRNA_P-littoralis_Contig863.10.1|Name=mRNA_P-littoralis_Contig863.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig863:54245..58594+ (Pylaiella littoralis U1_48)
ATGTGCTCCACACCCCCGAAATCGGGGAAGAGAGGCGGCGGGGTGTCCAA
TGACGGAGAATGTGATGAGATCCCGTTATTTGGGAAGGGCAGCCCCGTGG
TTGCCCAGGGCGTCAATGGAGATGACGCAAATGACATCGACGTGGACGTT
GAGGGGGGTGGCGAGGACCGTCAGGAGGAGGTGGAGAAGAGTCGAGCCTC
GCCAACACCAGGAGCCTTGAGCGCGCAACCGGTGAATAGTCCTCAGAAGT
CTTCTGCCGGCCAGACTGTCCGGAGGTCAAAGAGACGCCTTCGTATCGTC
GACAACTATGGCGACGACAGCGACTACGGTCTTCCGGAGGAGGAAAGCGA
AAGCGAGGACGAGAAGCTGAATGTAACCGCGGCGAGGAGGGTGTCGTCCA
AGAAACCAAAGTGTGGCGGAGGAGACCCGTAG
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