mRNA_P-littoralis_Contig863.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig863.4.1
Unique NamemRNA_P-littoralis_Contig863.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig863.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig863contigP-littoralis_Contig863:25314..28933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size191
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791737.8210046-CDS-P-littoralis_Contig863:25313..254031680791737.8210046-CDS-P-littoralis_Contig863:25313..25403Pylaiella littoralis U1_48CDSP-littoralis_Contig863 25314..25403 +
1680791737.8369465-CDS-P-littoralis_Contig863:28832..289311680791737.8369465-CDS-P-littoralis_Contig863:28832..28931Pylaiella littoralis U1_48CDSP-littoralis_Contig863 28833..28931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig863.4.1prot_P-littoralis_Contig863.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig863 25314..28931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig863.4.1

>prot_P-littoralis_Contig863.4.1 ID=prot_P-littoralis_Contig863.4.1|Name=mRNA_P-littoralis_Contig863.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
QPFKGHRREATTWERPDTIQPRVSPTAPHSVVFRFPMSSPADSDADVQVV
TRAEFELQVQAGE
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mRNA from alignment at P-littoralis_Contig863:25314..28933+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig863.4.1 ID=mRNA_P-littoralis_Contig863.4.1|Name=mRNA_P-littoralis_Contig863.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3620bp|location=Sequence derived from alignment at P-littoralis_Contig863:25314..28933+ (Pylaiella littoralis U1_48)
CAGCCGTTCAAGGGCCATCGGCGCGAGGCTACGACGTGGGAGCGGCCGGA
CACCATCCAGCCGCGAGTCAGCCCTACTGCGCCACACTCGGTACGAGCGA
CGCATGTAACATTGTTAGGACTGAAAGGAAAATCGCCTGTTGTGTGGCTG
TGCGCGGATACGCGCTTCGTATGCGGATAGGCACGGAGTAGGTATGGCTA
GGGTTAGGGCCGAGCCTAAGGAGGCATATTATGCACATTACCATCTGGTG
GGCACACAGTAGAGCACCACGTTACACGCGCTGCCGGTGCAGCGTAGACG
CACGACGCACTACTGCGCAATACGTGCGTACGTCAACACAAGCTGTCATC
TCGTTACACATTTGACATGAGACCTGCCAGGAGGTAACGATACACAGCAG
TGGATGTTCGCACATCGTATAAATGTCGACAGCCGTCGCACGCCGGTCAT
CTAAAAACCGGGCGAACCCATACCAGAGATCACTGACACACGCATTGGGG
CACAGCGTAGGGACGCTGCACGCGTTCTGTCGCTAACGGGCGCGCGTGGC
CATGGGTCTAATATATCGTCTCACATTTGTCAAGGGACATGTCATAGGGT
ACCACGATGCGATCATATGAGAGTTGAGACTGTCGCACGCCACAGAGCGA
GTTACCTTCATACCAACCCAGGTCGCCATTCGATAGACGCACACCCGTAA
TGATAGACGCACACCCATAATGAGGCTGCCGGCGCAGCACAGGTGCAGAT
AGCCATAACGTAGTCCACTATCGCGCATTTCGTACTTGGTACGTACGAGG
TACCGAATGCAGGTTCCGTAATGAGGTCACCAGGACATGGTCGGACGAAA
CAAAAACAAAAATGCGGGTCACCAAAAATCCAACTTTGATCCGTGGTACA
GAGACCGCCGCCCACACAATGGCGGAGAACCGAAGTTGTAGGCGTCATTC
GACGCAGGGCCAACGATACTGTTACCATGAGCCACCACTGCTGTCCGATT
GTTGCGCGATACACGATATCATGTCGTGAGATCGCACACACAACGGTCAG
AGAGGGCACATAGCAGCAGTAGTAGTCACATATATCGTTGCACATACACG
ACGACTCGACAGTCAACGCCGTGAGGTCAACTACATTAACAATATACCAA
AGTATATAATGCTTCGACTACAGGGTGTGAACCGGAGTTGCAGGCGTCAT
TCGACGCAGGGTAAACTATGCTACTACCATGCGCCACCGCTGCTGTCCGA
TTGTTGCGCGATCCACAACGTCCATGTAGTGAGTTCACGCACACAACGGG
CAGGGAGGGCACGCAGTAGCGGTAATAGTCGCTTATATCGCTGCACATTA
CACGACGATTTGCCAGTCAATGCCGTGAGGTCAACTACATCTATTATCAA
TATACCGAAGTATGTGATACTCCAACTCGTGGGTGTAGTCGACGTAGTTG
ACCACACCGGAGAGAAAAATCCAGCAGTCTGAATCGAATAATAATACAAG
GAGACGAGAGAAACAAACCCGGAGGTTTCGAGTTTAACACATGTATTAGA
GGGTGTAGTCGACGTAGTCGACCACACAGGATAAATTCAGCACAGCTGAA
GTCATGATATACCAAAATATATGATACTCCGACTCGAGGGTGTAGCCGAC
GTCGTCGACTACACGGGAGAGGGGAAAAACAAAATTCAGCGGGTCTGAAC
CGAAAAGATAATACAACGAGACGAGGGACACCAACCCGGGGGTTCGAGTT
CAACGCATGTATTATAGGATGTAGTCGACGCAGTCGACTATAGGGTGTAG
TCGACGTAGTCGACCACACAGGGTAAAGTCAGCGAAGCTGAAATAAAAAA
TATACCAAAGTATATGATACTCCGACTCGAGGGTGCAGCCGACGTAGTCG
ACCACACGGGAGAGGGGAAACACTAAAATTCAGCGGGCTGAACCGAAAGA
TAATACAAAGAGACGAGAGAAACAAACCCGGGGGTTTCGAGTACAACGCA
TGTATTATAGGGTGTAGTCGACTCAGTCGACCACAAAGGGGAAATTCAGC
AAGGCTGAAACGGAAGATAATACAAAGAGAAAAACGAACCCGGCGGTTCT
CGCATACAACACACGTATTATCCCGCCCGCATCACACACTGGTGATATCA
GGCGATGGCACTTCCAACGTAGTGTCAAAAAGGGCGAGTTCCTCGCAGGT
GCGAGAAGCAGGTTTTGCCCACATCCTCGCGTCCCGTAGTTTTGCCACGG
TAACCGCGAGAGTAACATAACGCGTGCGATATACAGCGAAGCTCGTACAA
ATCCGCATGTCTGCGCATTACGGAAAACCCCGCGTCGTTGTCGCGGTGCA
CTCCGCACAATTACGATATCAAGAGGCCGGCGCCTCGACCGACGTAGTGC
CACCAATGTCGTTTTGTTTTGTTTTTCGTTGTCGCGGTGCACTCCGCACA
ATTACGATGTCAAGAGGCCGGCGCCTCGACCGAAGTGGTGCCACCAATGT
CGTTTTGTTTTGTTTTTCGCAAGGGTGGAAAATCGGTATGGCCCATAAAA
TTCGCGTAACACCATCTGCTGTCGCTGTCATACGTACCCATGACCATTGG
CCGGCGCCAAAAACCTCAATAGTACCAGCAGGGCCGCGGTTCTCACAAGT
ATGGAAAATAGGTTCGGCACGTAGTTCTGCGTACCACGAGAACGAAGACA
AACATACATATGGCACCGAAATTAGGGTCTGTTAAAGCAGGAACAGCACC
GTTTACTCGAAGTTCCCACCGGCGTGGCGGTAGAATAAACAGGATTTTCG
ATTCGGCATGGAATAACCGGCCCCGCGGCGTGGAGACACGCGCACGGGAT
AAGTAAGTGGTCAGGTGCAGCTATGGTCCCACTCTTATCTCACGATTGCG
AACCCACCTGTCTGGTTTTAATTTGGCGATGAATTTGTATTTTCCCAAGA
GGTTTTTTTCTTTTCGGAGCCAACATTACTATCAGAGAGAGGAGTCGCAG
CCATGAGCTTTGAACACTGCAGCAGACACGTATACACGGAATCGTACGGC
GCACACCTATCGCACATACGTCACGCCGTAGGCACTGCTGGAGCAGATAC
GGTGCGATACCAAGGTCGCACCCAGCCTGTATACAGCAGTTGCACAAAAA
CCGCATGTTAGTACGGGCGAAGTGCCCAGGGTGATCCGGGGTAGGTAGCG
GGCATGCGCACTTATCCTCAAATTCCATGCGAAATATGCCGGCGCATGCT
GATCGGGCTACGGGGGTAAATAAAAGCACCGGCGGGGCGTGAGTGATCGG
TATCACTCACGAAGAAATATAGTGACGGGGTGTGGGTGCAACATATGCCA
CCCACGGTTAAAGGCGTCGAACGTGCCGGAGCACGAGGTTGTCACGCGTT
AACCAGGCCCGCTGCTATGTTCCACCTCCAATCATTGCTGACCCCGCCCC
TCCGCGGTACCCTGCCACCCCCCCCCACCCCTTTGGACACGATCATCGGA
TTCATCGAATAAATTCCAGGTGGTATTTCGGTTTCCTATGTCCTCGCCAG
CCGACTCCGATGCCGACGTCCAAGTGGTGACGAGAGCTGAGTTCGAGCTG
CAGGTGCAAGCCGGAGAAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig863:25314..28933+

>mRNA_P-littoralis_Contig863.4.1 ID=mRNA_P-littoralis_Contig863.4.1|Name=mRNA_P-littoralis_Contig863.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig863:25314..28933+ (Pylaiella littoralis U1_48)
CAGCCGTTCAAGGGCCATCGGCGCGAGGCTACGACGTGGGAGCGGCCGGA
CACCATCCAGCCGCGAGTCAGCCCTACTGCGCCACACTCGGTGGTATTTC
GGTTTCCTATGTCCTCGCCAGCCGACTCCGATGCCGACGTCCAAGTGGTG
ACGAGAGCTGAGTTCGAGCTGCAGGTGCAAGCCGGAGAA
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