mRNA_P-littoralis_Contig862.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig862.2.1
Unique NamemRNA_P-littoralis_Contig862.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig862.2.1 vs. uniprot
Match: A0A6H5KHU9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.260e-9
Identity = 39/106 (36.79%), Postives = 50/106 (47.17%), Query Frame = 2 
Query:  227 GLVSMMDRECLLAMLSAHAAVDSR------PGVGEFGGNKE------------SGDGGGLPKGFLARLASAVDLQGAVAGDRPSPEPPDFPHCSASDLRLPKHYNE 490
            GL+SM+D+  L++ML A  AV+         G+GE                     GGGLP      LA   D+   +   RP  + PD PHC ASDLR+PK YNE
Sbjct:  564 GLISMLDKNTLVSMLEAQRAVEEERREPGGAGIGEXXXXXXXXXXXALAAVGLGAGGGGLPLVCATLLADREDIDAMLRNQRPPKQRPDLPHCQASDLRIPKSYNE 669
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig862.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHU9_9PHAE6.260e-936.79Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig862contigP-littoralis_Contig862:30390..35513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size537
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791737.2932792-UTR-P-littoralis_Contig862:30389..305581680791737.2932792-UTR-P-littoralis_Contig862:30389..30558Pylaiella littoralis U1_48UTRP-littoralis_Contig862 30390..30558 +
1680791737.3340466-UTR-P-littoralis_Contig862:35490..355131680791737.3340466-UTR-P-littoralis_Contig862:35490..35513Pylaiella littoralis U1_48UTRP-littoralis_Contig862 35491..35513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791737.3093388-CDS-P-littoralis_Contig862:30558..305611680791737.3093388-CDS-P-littoralis_Contig862:30558..30561Pylaiella littoralis U1_48CDSP-littoralis_Contig862 30559..30561 +
1680791737.3227692-CDS-P-littoralis_Contig862:35148..354901680791737.3227692-CDS-P-littoralis_Contig862:35148..35490Pylaiella littoralis U1_48CDSP-littoralis_Contig862 35149..35490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig862.2.1prot_P-littoralis_Contig862.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig862 30559..35490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig862.2.1

>prot_P-littoralis_Contig862.2.1 ID=prot_P-littoralis_Contig862.2.1|Name=mRNA_P-littoralis_Contig862.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MLAEAPPEIDDDDDLSGQMGLVSMMDRECLLAMLSAHAAVDSRPGVGEFG
GNKESGDGGGLPKGFLARLASAVDLQGAVAGDRPSPEPPDFPHCSASDLR
LPKHYNEGCGCRVF*
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mRNA from alignment at P-littoralis_Contig862:30390..35513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig862.2.1 ID=mRNA_P-littoralis_Contig862.2.1|Name=mRNA_P-littoralis_Contig862.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5124bp|location=Sequence derived from alignment at P-littoralis_Contig862:30390..35513+ (Pylaiella littoralis U1_48)
TCACCTGGGGAACGTCAAGTAATGTAAACTATCTTCGTTGGGTTCATATC
TTTACCTCCTGACCGCCGACAGCACAAAACACGCTAGAGATTAGGTATAC
CTTAGGGCTCTCGGCTAGACAGGAGGACCACATCGCGAGAAGCGATGTCG
GGCGAAGATTTTTCAGAAGATGGTGGACAGGGCGACGGGATGGACAACAG
CCTCAACACCAACTTTACACACGACCAAATGGTCACGATCAGGGAGCTTC
TCGCGACTGCGACAGCAACAGCGACCGCCAATGCAACGGCGGCCGCCATT
GAAGCAGCATCTCTGGCCGCGCAAGCTGCGGCTACCTATACAGCAACACC
ACCGCCAAACCCCACATCAACAGCGCAAGCACAACATGCTTTTGCACACG
AACAAGCCCAAGCCCACCAGGAGGACAGAGCCACACACGACATCGAGCGT
ACGGACGGAACCTCATCTGCGGGACAGGACACCGTGGTGCAGCAGCTAAT
CACTGCGCTGGGAAGAATGGGGACAACGCCCAACCAAGGGTCGACGGTTA
GCACGTATAGTCAGGGCAGTAGAGTGGAATTTACTGGAAAGAGGGGGGAA
GATGAGCCGACAATGTTCATGGTAAGGTTTGAGTCTTTGTTTCGATCTAT
GGAGTTGGAAGATGCGTTTTGCAGGACAGTACCGATCAAGGTAGGAGTGC
TGTCCAGGGAGGAATTGTACGGGCAATTTCACAGACGTGAGGTAGATGCT
GCTTACAGGGCTTGGAACCTGCTCCTGAACAGTGTGGTAGACGTCGCAAT
GATGGTTAGGATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGT
TCAAGAATTACTACACTCCACAGGCAGATGCTGAGAAAGAAAGAGTACGA
CAAGAATGGTATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTT
TTTTTCCAGGGTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTG
TAATGGAGGAGAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCG
CTGTTTAACACGCAAGCCGAAATTTTGCTCGCCAATCCGTTTGCTACCCG
CGCGAATATAGAGAGTGTGGTGCTCAACAAACATGGAGCCATGGAGATGG
ACTCGAAGAGGGAGAGAGAGATGGGAGAACAGCTCGCCCTCGTTGCCGCA
GGACGCGGGATCGGGGGCGGCGGAGGGAACAACGGCGGTGGCAACGGAGG
ACACTTCATGGGGACACCGCATGGAGGGACGCATCAACGACCGCCGTACA
GGCGCCGCAGCAACAACAGCAGCAACAGAACCAACAGCAGCTGCGGCAAC
AACCGCAAGATCACCAACGGCGCCCCGACTCTCGCCCATTCTGTACCTAC
CATCAGATTTATGGACACAGCAACGAGGAGTGCCACAGGAACGTGCGGCG
AGGGGGCTACGCACAGCAGCAACATGGATTTCGCCAACAGCGTCAGTCGG
GTGGAGGCGCAAGGGGCAAGGGGTACCGCAGCAACAGCACAACAACGGGG
GAGGAGGTCATCAAGTCCCTGAAAGGTATGGTGCTGGAAGTAGTGGTCCG
AGGTGGGCAGACGCGAAAACTTTGCCTGCGTATCAGGCCCCTGACGGGGG
ATACAACTACGACAGATACCCGGCGGGCATGTACCGCCCACAAGGAAATG
AACCCCCTATCCACGGGGCGGATCCACGACAGCGGTGCATCTCGTGTGGT
GAGTTTGGACACATTCACCAATTTTGCCCCGCGAGGACCAAGATACACCC
GCCCGATCCCGGTATAGTCCGACAGCCAACCAGCAACACCAATCCCTGGA
AGCATTCGTACGGCGCTTTTCCCGCCCAAGCGGCTCACGCCGTGGTCGAG
ACTTCTGCTGTACAGCAGCAAACACCAGGGGGACATCAACAACAGCAGCA
GCAGGAATATGCGGCGAGACTGCAGCAGTCGCAGCAGGATGCTCGAATCA
CATCTCAGCAGCCATCGCCACCGCAACAGGCAACCTACCGCTACACAACA
GCAGCCAGCTCCATCGCTCCTCTCTCTTCTTCGGATCCGTCTCCGGGGCT
TCATGGGGCAGGGCGCTCACTCATGGCTTTGAGTGTTCCAGAAGGCGAGT
TTGTTTTTTCTGGTGAGGGTTTTGCAGCGAGCGAGATTGATTTTTCTGGT
ACGGGATCATGGGGCAGAGAATGGGGGATGGGAGATGTTGCGCTTACCAC
TCAACAACATAACGGTATTACTCCACCACCCACACTATGGTTTGCCGACA
GTGGTGCGTCCAAGAGTATGACATCTGATTCTAGTTTGATGTACAACATG
CGTGAACCCCCCCCTGGTAGCAGTAGGATAGTGATTGCGGGAGGTGCGAC
TTTGCGTGTGGTTGCCTGCGGTGATTTGGATTTGATCATGCATGCACGCA
CCGATTTTTGGTACGGATGACAAGCGTCTTGCTTGTGGAGGATCTCTCCT
TCAATCTTTTTTCTTTGCACTGGGGACAAAGGAACGGTAGGATTGTGCTA
GATGAGCAAGGGACACATTTATTCGACGGTCAACTCACGTTTCCGTACAA
TGAGACGGGATCTTATTTGCACGCGACTCGCGTGCCTCACCAACCCTCTG
CTTTTGCCGCTGCTACCGCTCTGCAAGCCGCCCCTGGTTTTCCCTCTTCA
GGCAACTCTGATTTTTCTGAGTCAGGTGTCCAGTCCACCGCTTCGGGTGT
GGTGACCTCCGCTTCCGGTTTCCAGCCCACTGGTTCTGGTGTCGTGTCTT
CGGCTTCTGGTATACCATCCGCCGAGAACGGTGTAGTACCTTGTGTCTCC
GATTTTTCAACCACCCCTTCAGCTGTAGTACCATTTGATTGTGGTTTCGC
TTTGGACGCTACCTCGGTAGACACTTTGCTGGAGATGCTTGATGCCCGCC
CCGCTTTAGAATTGCTTGAGCGACACATGAGCATGCCCTCCACTGATTTT
TTGTTCGACGAAAGACTGCTGGCCGCTATTTTGCCTGACGTGGATCATTT
TTGTGCGCGCGACCCTGATTTTCTGCCGTTTGCTCCGAACGCCGTCGATG
CCCTTGCTCTCCAGCAAGAAGAGTGGTATGCACTCTTTCCGTATGTAGAA
GTTGAGCTTGAAACTGGGCCGCTTTTTGATGGGATGACTAGCTTTGCTGC
GCTTGCTCCGAGTAAGAAGCCTTATTTTGTAGGCAAACGGCCAACCTCGG
AAGATATAAACGTCTTTCATTGCGGTAACGGCCATCTTGGTCAGCGTTCT
CTTGCAGCCACTGCCAGGTCCCACGGACTTCGCCTCACCAACGATCTTTT
GCCGTGCGAGAGCTGTGTGGCGGCTACAGGGCGTCGGGCTTCATGCCCGC
ACCGGACCACATCGAGAGCAACCGAGCCGTTGGGTACGGTGCTGCTCGAT
ATCGCGGGGCCTTTCGAGGCATCGCACGGGGGGTCCAACTACATGGTCGG
CTTCGTCGACAGCTGTTCTCGGCGCGGCCAGGTCTATGGCATGCGCACCA
AGGCGGACCTTCTCGTCTACGTTCAAAAGTTCATCGCGGACATCGGCAAA
CCGAAGTGCTTCCGTATGGACAACGCCGGCGAGAATACCAGCCGGCGTTT
CGTGACTTTCTGCGACGAAAACGCCATTCGGCGTGAGTACACCGCGCCGC
ACACAGGGCAACAAAACGCCCCCGTCGAAAGTTTGCTGTGGCGTGTTCTC
AAGGGGGACACTCTGCAAGGCTGGATATACGGCGGATTTTTCCTTTGCTG
GATTTTTCAGCGATGGAGCACCTGGGTCCCGATTTTGAGCGGCTGTGGAT
GGAGGCAGCTCTTTGGGTGTGCGAATGCATCAATCGCTCTTCTTCTTCGG
CGAACGCGGGCTTGCTTTCGCCGGACGAAGTCTTCTTCGGAAAGCCTCCG
CCGCTTCAAATTGTCCCATTTTTTCAGCCGGGCATGATGCGAGTGGAGCG
GGCGCGCAAGGGTGATGTTCGGGCGGTGCGGTGTTACTATCTGAACGGTG
GCTACAACCACTCATCGGCGTGCGTCAAGGTGCTCAACGCCGAGACATGG
GCCGTGTGCCACACGAAGGACATTGTGTGGACGGTGCCGCAGGTTCGGCC
ACCTGCGGCGATACCGCCCGCAGCCGAGGGGGAAATGGGATCGTCTCCGA
GCTATTACCGCCGCAGGACACCGCTGTTTACACCACCACCACCGCTGCCG
AGCCTGCTCCTGCCACTCCCGCCGCCGCTCGTGCTGCTGCCGCTCCAGGG
TGCACCGCCGTTCCGCAAATGATCGGCGCTCTCCGCCCCGAGCCTGCCGC
CGCTGAGCCTGCCGCTACTGCCACTACCGCCGCCGCTCGTGCTGCTGCCG
CTCCAGGGTGCACCGCCGTTCCGCAAATGATCGGCGCTCTCCGCCCCGAG
CCTGCCGCCGCCGAGCCTGCCGCTACTGCCACTACCGCCGCCGCTCTTGC
TGCTGCCGCTCCAGGCTGCACCGCCGTTCCGCAAATGATTGGCGCTCTCC
GCCCCAAGCCTGCTGCCGCCGAGCCTGCCGCTACTGCCGCCGCTTCTGCC
GCTTCTGCTGCTGCTGCCAATCCGGAGCAGGAACCTTTGACTCGGAGGGC
GATACGAGAACTCGCACCCGGGAGGGCGACGGAGGGCATGGCCGACCCTC
GGCGGATGGGCAGGACGAGATCTTCAACGAGACACCAGGCTcCCTCTCCT
CTGCCGCAGCTGGCGGAAGCACCGCCGGAAATTGATGACGACGATGACCT
TTCAGGGCAGATGGGCCTTGTCTCCATGATGGACAGGGAGTGCCTGCTCG
CGATGCTCTCCGCGCATGCGGCGGTCGACAGCCGCCCGGGTGTTGGGGAG
TTTGGGGGGAACAAAGAGTCTGGAGATGGTGGAGGTTTGCCTAAGGGATT
TTTGGCAAGACTGGCCTCTGCGGTGGATCTGCAGGGTGCCGTGGCGGGTG
ATCGGCCGTCGCCCGAGCCTCCGGATTTCCCGCACTGCTCTGCAAGCGAC
TTGAGGTTGCCAAAGCACTACAACGAAGGATGTGGGTGTAGAGTCTTTTG
AATTTCACCGCAAGTACGTGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig862:30390..35513+

>mRNA_P-littoralis_Contig862.2.1 ID=mRNA_P-littoralis_Contig862.2.1|Name=mRNA_P-littoralis_Contig862.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig862:30390..35513+ (Pylaiella littoralis U1_48)
ATGCTGGCGGAAGCACCGCCGGAAATTGATGACGACGATGACCTTTCAGG
GCAGATGGGCCTTGTCTCCATGATGGACAGGGAGTGCCTGCTCGCGATGC
TCTCCGCGCATGCGGCGGTCGACAGCCGCCCGGGTGTTGGGGAGTTTGGG
GGGAACAAAGAGTCTGGAGATGGTGGAGGTTTGCCTAAGGGATTTTTGGC
AAGACTGGCCTCTGCGGTGGATCTGCAGGGTGCCGTGGCGGGTGATCGGC
CGTCGCCCGAGCCTCCGGATTTCCCGCACTGCTCTGCAAGCGACTTGAGG
TTGCCAAAGCACTACAACGAAGGATGTGGGTGTAGAGTCTTTTGA
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