mRNA_P-littoralis_Contig86.160.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.160.1
Unique NamemRNA_P-littoralis_Contig86.160.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.420e-36
Identity = 67/148 (45.27%), Postives = 96/148 (64.86%), Query Frame = 2
Query:    5 MGQLAFTFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKRRKDDTLSAIW---YHIRF 439
            +G+LAFTFF+  FPA V+  +V++TN+ F FC +T   +    +E RH+ +KA  G + WP+ GI  S M  +  I+L +GLV+LPAM DHW    FHD++L+R+C+ RDMF L+Y RFFHM   G P+R +  T    W   +HIR+
Sbjct:  489 LGELAFTFFSIMFPAAVILLLVRKTNEYFNFCRSTKNPKG---QEQRHRDQKARKGKSSWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIRY 633          
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.960e-36
Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 2
Query:    5 MGQLAFTFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKRRKDDTLSAIW---YHIRF 439
            +G+LAFTFF+  FPA V+  +V++T + F FC +T   +   ++E RH+ KKA  G + WP+ GI    M  + GI+LA+GLV+LPA+ DHW    FHD++L+R+C+ RDM  L+Y RFFHM   G PKR +D T    W   +HIR+
Sbjct:  695 LGELAFTFFSIMFPAAVILLLVRKTYEYFNFCRSTKNPK---EQEQRHRDKKARKGKSSWPKKGITKRMMQGVIGIILAIGLVQLPAVHDHWSCHSFHDYKLVRACLPRDMSLLIYGRFFHMASSGAPKRLQDGTTEPGWGSLHHIRY 839          
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5KUF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.760e-17
Identity = 46/125 (36.80%), Postives = 64/125 (51.20%), Query Frame = 2
Query:   71 KQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVK-------LPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKRRKDDTLSAIW 424
            +  N+ F FC +T I +    +E RH+ KKA  G + WP+  I  S M  + GI   L             A+ DH     FHD++L+R+C+ RD F L+Y RFFHM   G P+R +D T    W
Sbjct:  568 EDANEYFNFCRSTKIPKG---QEQRHRDKKARKGKSSWPKKAITKSMMQGVIGIRSDLSAATGGHFQATNAAVHDHLSCHSFHDYKLVRACLPRDTFLLIYGRFFHMASSGAPERLQDGTTEPCW 689          
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.520e-15
Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 2
Query:   23 TFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKR--RKDDTLSAIW---YHIR 436
            T F   FP   +   V +TN     CTT  +  A D R+     K    G    PE       +Y + GI + +GL K   M  HW  S   D+ L+R CM RD+F L+YCRF H   G  P R   +D T +  +   +HIR
Sbjct:  131 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQLEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTHMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIR 273          
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.510e-15
Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 2
Query:   23 TFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKR--RKDDTLSAIW---YHIR 436
            T F   FP   +   V +TN     CTT  +  A D R+     K    G    PE       +Y + GI + +GL K   M  HW  S   D+ L+R CM RD+F L+YCRF H   G  P R   +D T +  +   +HIR
Sbjct:  422 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIR 564          
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.960e-15
Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 2
Query:   23 TFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKR--RKDDTLSAIW---YHIR 436
            T F   FP   +   V +TN     CTT  +  A D R+     K    G    PE       +Y + GI + +GL K   M  HW  S   D+ L+R CM RD+F L+YCRF H   G  P R   +D T +  +   +HIR
Sbjct:  638 TCFDMMFPDEAIDLFVDKTNKYVNLCTTPSLPGAKDTRKAHQVEKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIR 780          
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.230e-14
Identity = 47/128 (36.72%), Postives = 59/128 (46.09%), Query Frame = 2
Query:   14 LAFTFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKAKKANN-GNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPKR 394
            L  T F   FP   V   V +TN     CTT P+  A D R+  H+ KK    G    PE       +Y + GI + +GL     M  HW  S   D+ L+R CM RD+F L+Y RF H   G  P R
Sbjct:  530 LMMTCFDMMFPDEAVDLFVDKTNKYVNLCTTPPLPGAKDTRK-AHQVKKTRTLGMVTLPEPAFERKHIYGMLGITITMGLTMKTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPR 656          
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5K5H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.300e-9
Identity = 33/90 (36.67%), Postives = 46/90 (51.11%), Query Frame = 2
Query:  200 NMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYC-RFFHMPPGGGPKRRKDD-----TLSAIWYHIRFV*FL 451
            N   +Y + G+ + +GL K   M   W  S+ HD+ L+R+CM RD F L+YC RF H      P R  DD        + W HIR + +L
Sbjct:  147 NEDNIYGMVGLTITMGLTKKTRMRKRWSTSQRHDYPLVRNCMSRDKFELLYCCRFIHCSDANAPSRLLDDGEDDPDYDSKW-HIRIMGYL 235          
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 8.570e-8
Identity = 30/90 (33.33%), Postives = 42/90 (46.67%), Query Frame = 2
Query:  185 PEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDFELLRSCMIRDMFALVYCRFFHMPPGGGPK------RRKDDTLSAIWYHIR 436
            PE       +Y + GI + +G  K   +  HW  S   D+ L+R CM RD+F L+YCRF H   G  P       +  +    + W HIR
Sbjct:  537 PEPAFARKHIYGMLGITITMGFTKKTRIRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPHWTGEDKTPNPEFDSKW-HIR 625          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L3T1_9PHAE1.420e-3645.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JFU5_9PHAE2.960e-3645.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUF1_9PHAE6.760e-1736.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIE0_9PHAE1.520e-1534.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNV0_9PHAE3.510e-1534.27DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE3.960e-1534.27HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JJP9_9PHAE3.230e-1436.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H6_9PHAE5.300e-936.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2B4_9PHAE8.570e-833.33DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:569605..571821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005111750.1
PFAMsDDE_Tnp_1_7
Model size793
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
Exons2
Evalue0.000167
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3CZSB@33213|Bilateria
DescriptionTransposase IS4
Cds size441
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791736.076457-UTR-P-littoralis_Contig86:569604..5696081680791736.076457-UTR-P-littoralis_Contig86:569604..569608Pylaiella littoralis U1_48UTRP-littoralis_Contig86 569605..569608 +
1680791736.1239984-UTR-P-littoralis_Contig86:571473..5718211680791736.1239984-UTR-P-littoralis_Contig86:571473..571821Pylaiella littoralis U1_48UTRP-littoralis_Contig86 571474..571821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791736.0916116-CDS-P-littoralis_Contig86:569608..5696801680791736.0916116-CDS-P-littoralis_Contig86:569608..569680Pylaiella littoralis U1_48CDSP-littoralis_Contig86 569609..569680 +
1680791736.1089928-CDS-P-littoralis_Contig86:571104..5714731680791736.1089928-CDS-P-littoralis_Contig86:571104..571473Pylaiella littoralis U1_48CDSP-littoralis_Contig86 571105..571473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.160.1prot_P-littoralis_Contig86.160.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 569609..571473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.160.1

>prot_P-littoralis_Contig86.160.1 ID=prot_P-littoralis_Contig86.160.1|Name=mRNA_P-littoralis_Contig86.160.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
MGQLAFTFFTFTFPAVVVAFIVKQTNDCFTFCTTTPIDEADDKREDRHKA
KKANNGNARWPEGGINMSTMYSLFGIVLALGLVKLPAMEDHWDVSKFHDF
ELLRSCMIRDMFALVYCRFFHMPPGGGPKRRKDDTLSAIWYHIRFV*
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mRNA from alignment at P-littoralis_Contig86:569605..571821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.160.1 ID=mRNA_P-littoralis_Contig86.160.1|Name=mRNA_P-littoralis_Contig86.160.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2217bp|location=Sequence derived from alignment at P-littoralis_Contig86:569605..571821+ (Pylaiella littoralis U1_48)
TGCCATGGGGCAGCTGGCATTCACCTTTTTCACCTTCACGTTCCCTGCAG TGGTCGTTGCTTTTATCGTGAAGCAGGTGAGACATGAAGCATTTCTTCCT TCAATCTTTTCCACACCTCGGCATGAGGGTTACCTTTAGGCAACAAGACA GACGAGAGGAATTTACTTTACAAGTAGGTTCGAGCAAGAGCATTGCTTAT ATTCCGATTTTGTGTCGTACAACACAACAAAAAACAATCCATCGCAAATT TGCAAGGAGTCTGCGCCAAAAAAGTTGTTGCCTGGTCGCCGACACAACTA GTCTGTCGGCTGGCAAAGTAAGAGCTGAGGGTGCCAGATCAGGCGAAGGA ACTGTCACCGAGAGCAATAAACGATGTGTTTTGTAAACTGTTCTCGACTA ACGGCAGCAGCAGCAGCAGAGAGAGGGAGTGGGTGTTTGTTGGGTGTTTG TCAAAGCACATATTTCGCACATGACACCCACCGCTGCGGCTGCCGTAGAA GAGCTGACTCATACTTTAGCGTCGGTTCTGTCTTGCAGTGCAGCAGTGGG TTTGTTGGGTGTCTTTTGCTCTGTGGATGTGTTGGCTCATCTGTAGCAGT AGCAGCAGCAGTTGTTGGGTTTGTGTGTGTGTTGCCCTTAATTCAGCAGC AACAACAAGAGTGAAAGCGTGGACGGAGCTGGCCGTGGGTTGATCGTTGT CGACGGTCGTGAGGAAGCAACGGGCAGTTTCGTGAATAATGATGCCGAGT ATATTTGACCAATCTCAAAACGTGCAGACGCGGACTCGCTTGGCACCGCA ATATTTTTTTTAACGAGCACAGCAGTGCATTTAAACTACAGGCGATGATA TAGGGTAGATTAACAACGAACAGTATGGCATGGACTCACAAGGTAATGCA CCGTTAGCACGGTGACGAGAAAAATGGGAACGAATTTTGAAATGAGAACG AAGTGAAAGGGTTTTTTCTCATTCAGATTTGAAGTAAGTATTCTATGAAG GCACCTGGCGGAGGAGGGGGGGGGGTTGTGACGCGACACATCTCGGATCG CAAAAGCCATACAATAGTTAGGGGTCGAAGGTGCCTTCGAGGTCTACTAT TTGCCGAGTTAAAACACAAAATATGGTGTCACTTCGTTCTAATTTAAACG TTCGTTCCCATTTTTCTTGTCGCCGTGTTCGTTGCAGCTTGCCCGAGGTC ATCAGGCTTGAAATATCGTTTGTTACATACAGGAATTTCAAGTACTGTGT TCGTCGCAGTTACGTGGCCTCCCGGGGAAACCCCGAGCGGAAACTTGGGA AGATAAATTGTTCAGCGCAAATAAATTATTTCAACATATTATTCCGAAGT GACCCATGTGCGAGGTTGTTCAATGCCCCTTATTTCCTGACACGTTCGCG TCGCTTCCCATGTTTAAATGACCACATTGCACCGTGGCCTCGCTCTTCCT CGACCAAAGGCTAACTAGCACTTGCTTCCTTGCGTTTGCCGTCACTTTAG ACAAACGACTGCTTCACCTTCTGCACGACAACCCCGATCGACGAGGCAGA CGACAAACGCGAAGATAGGCACAAGGCGAAGAAGGCAAACAACGGCAACG CCCGGTGGCCTGAAGGCGGTATCAATATGAGCACCATGTACAGCCTCTTT GGGATCGTCCTCGCGCTTGGCCTTGTCAAGCTCCCAGCGATGGAAGACCA CTGGGACGTCAGCAAGTTCCACGACTTCGAGTTGCTCCGATCGTGCATGA TTCGAGACATGTTCGCCCTCGTCTACTGCCGTTTCTTTCACATGCCGCCT GGTGGTGGTCCGAAGAGGCGCAAGGATGACACATTATCGGCTATTTGGTA TCATATTCGGTTCGTATAGTTCCTTGGGAGAGGGCGTGGCAAAAAAGCCT GCCTCTGCGTGTATAGGCAAAACATCCACAACAGAAGTTTCTTACCAATG TTATTTGTTTTGCAGCGAACACCGGCACTTCACGGGATAATTTAGTTCAT GATCTACTTTTGTTTGGGGGGGGGGTCGTGTATGTTGCTATTTTCGTGTG CGTGCGTTTTTGTGCGGTCGCCCCGGGAGCAAGAGCAACAATCAAAACAT TCAAAGTTTGGGGCGTGATTATTTCGCGCGAGTTCCAACACACTTCCGGC TATTTCGTGCTTAGTATGCTCATTTCCCCCACACGTTTTGAGCGTTCTCG TTGGGCAAGGGCGTGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:569605..571821+

>mRNA_P-littoralis_Contig86.160.1 ID=mRNA_P-littoralis_Contig86.160.1|Name=mRNA_P-littoralis_Contig86.160.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig86:569605..571821+ (Pylaiella littoralis U1_48)
ATGGGGCAGCTGGCATTCACCTTTTTCACCTTCACGTTCCCTGCAGTGGT
CGTTGCTTTTATCGTGAAGCAGACAAACGACTGCTTCACCTTCTGCACGA
CAACCCCGATCGACGAGGCAGACGACAAACGCGAAGATAGGCACAAGGCG
AAGAAGGCAAACAACGGCAACGCCCGGTGGCCTGAAGGCGGTATCAATAT
GAGCACCATGTACAGCCTCTTTGGGATCGTCCTCGCGCTTGGCCTTGTCA
AGCTCCCAGCGATGGAAGACCACTGGGACGTCAGCAAGTTCCACGACTTC
GAGTTGCTCCGATCGTGCATGATTCGAGACATGTTCGCCCTCGTCTACTG
CCGTTTCTTTCACATGCCGCCTGGTGGTGGTCCGAAGAGGCGCAAGGATG
ACACATTATCGGCTATTTGGTATCATATTCGGTTCGTATAG
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