mRNA_P-littoralis_Contig86.117.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.117.1
Unique NamemRNA_P-littoralis_Contig86.117.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: D8LTJ1_ECTSI (DFRP_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ1_ECTSI)

HSP 1 Score: 345 bits (885), Expect = 5.900e-112
Identity = 197/222 (88.74%), Postives = 205/222 (92.34%), Query Frame = 2 
Query:  191 MPPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCTEQQRASDAAKNKKLASKEAKKAQEAELSALFDEALLTGAKKGGVAGKGKGEPIAVETKAKVVQETFVIEEGDKTLEDLIEEQRAKLHEQGKQARIRQGGTPVNEETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVDNATMKQRND 856
            MPPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQ SVN TEQQRASDAAK+KK+ASKEAKKAQEAEL+ALFDEALLTG KKGG AGKGK   +AVETKAK VQETFVIEEG+KTLED+IEEQR KLH +GKQ      GTPVN+ETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVDN TMKQRND
Sbjct:    1 MPPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKTPAVAVETKAKQVQETFVIEEGEKTLEDMIEEQRTKLHREGKQ------GTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVDNDTMKQRND 216
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: A0A835ZLI2_9STRA (DFRP_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLI2_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.600e-44
Identity = 116/215 (53.95%), Postives = 147/215 (68.37%), Query Frame = 2 
Query:  191 MPPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCTEQQRASDAAKNKKLASKEAKKAQEAELSALFDEALLTGAKKGGVAGKGKG---EPIAVETKAKVVQETFVI-EEGDKTLEDLIEEQRAKLHEQGKQARIRQGGTPVNEETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADA 823
            MPPK+   KK       ++IEDKTFGLKNK+KSK+VQ+Y++TV+ +V  +     ++A K K+          E E+ ALF+EAL+ G KK   AG GKG   +P+AV+T+ K VQETFV+ EE +KT+EDLIEEQRAKL  +GK       GTPV  ETLA WKA R A +  EERR V+ EM KK K KGL+VLSGRAL+DYDA+LF+DD DA
Sbjct:    1 MPPKKVDKKKIA-----KVIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAG-KKAPKAGGGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGK------AGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDA 203
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: A0A7S3M6K0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6K0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.770e-25
Identity = 101/253 (39.92%), Postives = 142/253 (56.13%), Query Frame = 2 
Query:  185 SIMPPKQQK-GKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCTEQQRASDAAKNKKLA--SKEAKKAQEAELSALFDEALLT--GAKKGGVAGKGKGEPIAVETKA-KVVQETFVIEEGD------------------------KTLEDLIEEQRAKLHEQGKQARIRQGGTPVNEETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVDNATMKQRN 853
            SIM  K QK  KKAV  KK++ I++ TFGLKNKNKSK VQ++I+ V+ SV    Q   +DAAK K++   +K A++ QE EL  LF+E +    G KK   A K     +  ++K      E    ++ D                        KT+ED+IEEQRAKL  +GK+      GTPV  E+ A W+  + A+K AE   +V+AE+ KK  GKGLSVLSG+ L++Y+++LF DD  A+D +  +  N
Sbjct:   14 SIMSGKDQKPSKKAVREKKEKTIDEATFGLKNKNKSKKVQQFINRVEKSVK--NQNGGADAAKAKEMKKENKLAQQLQEEELRILFNEGIANQFGKKKSAAAAKAGALGLTEQSKEIAAFMEGISSDDSDDESDNDEGPIFIDDEPEATVIFREKTIEDIIEEQRAKLAAEGKK------GTPVTAESFATWRTAKLAQKQAEAEARVKAELTKKKGGKGLSVLSGKELFNYNSSLFVDDDGAIDESEEQAMN 258
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: A0A7S2BQG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.920e-24
Identity = 104/251 (41.43%), Postives = 140/251 (55.78%), Query Frame = 2 
Query:  191 MPPKQQKG-KKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCTEQQRASDAAKNKKLASKEAKKAQEAELSALFDEAL--LTGAKKGGVAGKGKGEPIAVETKAKVVQET------FVIEE----------------------------GDK-TLEDLIEEQRAKLHEQGKQARIRQGGTPVNEETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVD 829
            MPPK++   KKA   KK ++IEDKTFGLKNKNKSK VQ +I  VQN+V  +  + A +  K +K A+K AK   + EL ALF+EAL    G KK       + E  A   K +  ++T      F+ +E                             +K TLE +IE +RAK+  +G   RI   GTPV EE+LA+WK+DR+ ++      KV+AEMKKK  GKGLSVLSG+ L+ Y+ +LF DD +A D
Sbjct:    1 MPPKKKNANKKADQKKKDKIIEDKTFGLKNKNKSKKVQGFIKNVQNNVQSSSGKNA-EQMKAEKKAAKVAKMQADEELRALFNEALDGSGGLKKQKTKKDKQKEQAASIRKEERDKDTLMKDYPFIADEMLAMTGMLNDMEPEELDEQLAIFKKTGKSEKLTLEQIIELERAKMRAEG---RI---GTPVTEESLARWKSDREERRRLANIAKVEAEMKKKKGGKGLSVLSGKDLFAYNQSLFVDDEEADD 244
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: A0A7S1BEE4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEE4_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.190e-23
Identity = 94/248 (37.90%), Postives = 142/248 (57.26%), Query Frame = 2 
Query:  191 MPPKQQKGK----KAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCT---EQQRASDAAKNKKLASKEAKKAQEAELSALFDEALLTGAKKGGVAGKGK--------GEPIAVETKAKVVQETFVI---EEGDK---------TLEDLIEEQR-AKLHEQGKQARIRQGGTPVNEETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVDNATMKQR 850
            MP K++K +    KA    K +L+EDKTFG+KNK+KS  VQ  + ++ N++  +   ++++ ++  K KK A+K  +KA + E  ALF EAL+  +KK  V  KG+        G+  + +T ++ ++  + +   E  DK         TLED IE QR AKL    K  R    GTP+ EE+L  W+  ++ +K  E ++ V+ E+KKK  GKGLSVLSGRALY Y+  LF DD +A D   + +R
Sbjct:    1 MPSKKKKNEQQSSKAANKAKAKLVEDKTFGMKNKSKSSKVQAQVRSITNNIMNSGDPKERKRAEMLKQKKSAAKAMRKAADQEREALFGEALMAVSKKTSVKKKGENSAIGRDGGDAASKKTTSRAMKMMYQMDAKELEDKFKDDPDYVPTLEDEIESQRQAKLKALEKSGRK---GTPITEESLKAWQERKRRRKAEEAKKLVETELKKKKGGKGLSVLSGRALYSYNKKLFVDDENAEDKNDIAER 245
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: A0A6T7LTW9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T7LTW9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.420e-23
Identity = 96/239 (40.17%), Postives = 133/239 (55.65%), Query Frame = 2 
Query:  191 MPPKQQKG-----KKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSV---NCTEQQRASDAAKNKKLASKEA-KKAQEAELSALFDEALLT--------GAKKGGVAGKGKGEPIAVETKA------KVVQETFVIEEGDK---------TLEDLIEEQRAKLHEQGKQARIRQGGTPVNEETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFED 811
            MP K +K      KKA   KK++L++DKTFGLKNKNKS  VQ Y+ + + S+       + R  DA K ++  +++A KKA+EAE +ALF EAL+         GAK G V  KG+      E K       K++ +    E  DK         TLED +E QR K   + K + ++  GTPV +ET   W+  ++ +K A  ++ V+ EMKKK  GKGLSVLSGR LY+Y   LF+D
Sbjct:    1 MPSKAKKAQEKESKKAAQKKKEKLLDDKTFGLKNKNKSSKVQAYVKSTERSILNAGTDARTRQMDAQKKEQAKARKALKKAKEAEQAALFGEALMAVSKKGPKFGAKAGKVEAKGRDGGDENEKKGGTSRAMKMMFQMDAQEMEDKLREDPNYVPTLEDEVESQRQKKLRELKASGVK--GTPVTQETFKVWQDKKRKRKEAATKKMVEKEMKKKKGGKGLSVLSGRELYNYKKDLFQD 237
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: A0A7R9VNV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VNV0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 6.830e-22
Identity = 100/245 (40.82%), Postives = 135/245 (55.10%), Query Frame = 2 
Query:  191 MPPKQQK-----GKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCTE--QQRASDAAKNKKLASKEAKKAQEAELSALFDEALLTG-------AKKGGVAGKGKG-----EPIAVETKAKVVQETFVIEEGDK---------TLEDLIEEQR----AKLHEQGKQARIRQGGTPVNEETLAKWKADRKAKKLAEERRK-VQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAV 826
            MPPK +K      KKA+  KK+++IEDKTFGLKNKNKSK VQ++I +V  +V  T+   QR ++A K              AE  ALF EAL+ G       AK+G V  KG+      +        K++ +    E  D+         TLED IE QR    AKL   GK+      GTPV  ET   W+ ++K K+ A+E +K V+AE+KKK  GKGLSVLSG+ L++Y   LF+DD +A+
Sbjct:    1 MPPKSKKKADAASKKALEKKKQKVIEDKTFGLKNKNKSKKVQQHIQSVTRNVMNTDGRTQRENEAKKXXXXXXXXXXXXXXAEQDALFGEALMYGKKKKALDAKEGKVEAKGRDHGDDEKKSGTSRAMKMMYQMDAKEMEDRLREDPNYVPTLEDEIEAQRQAMVAKLKASGKK------GTPVTPETFKAWQ-EKKRKRHADEAKKLVEAELKKKKGGKGLSVLSGKDLFEYKKELFQDDDEAL 238
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: A0A6T6H7B8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6H7B8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.820e-21
Identity = 95/251 (37.85%), Postives = 137/251 (54.58%), Query Frame = 2 
Query:  191 MPPKQQKG----KKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCTEQQRASDAAKNKKLAS--KEAKKAQEAELSALFDEALL-------TGAKKGGVAGKGK--GEPIAVETKAKVVQETFVIEEGDK------------TLEDLIEEQRAKLHEQGKQARIRQGG--TPVNEETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVDNATMKQRND 856
            MP K +KG    KK    KK ++IED+TFGLKNKNKSK VQ++I +V   V   +++   +  K K++    K  KKA+EAE +ALF EALL       T  K G    KG+   +  A +  ++ ++  + ++  +             TLED IE +R K     K A +++ G  T V  E+ A WK  ++ ++  E R+KV+AE KKK  GKGL++LSGR L++Y   LF  D D  D A  KQ +D
Sbjct:    1 MPAKAKKGGNASKKTEQKKKNKIIEDRTFGLKNKNKSKKVQQHIQSVTKQVMSVDRRTRMEEEKRKQMRKDHKLRKKAEEAERNALFGEALLAVKKKKTTNQKDGKQEAKGRDGNDESAKKGTSRAMKMMYQMDAQEMEDRLKEDPNYVPTLEDEIESERQK-----KVAELKKSGQGTKVTPESFAAWKEKKRKRRAEEARKKVEAEFKKKKGGKGLAILSGRDLFEYKRELF--DKDLEDGAADKQVDD 244
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: A0A7S2R4K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4K8_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.950e-21
Identity = 94/246 (38.21%), Postives = 130/246 (52.85%), Query Frame = 2 
Query:  191 MPPKQQK-GKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCTEQQRASDAAKNKKLASKEAKKAQEAELSALFDEAL--LTGAKKGGVA-GKGKGEPIAVETKAKVVQET-----FVIEE-----------------------------GDKTLEDLIEEQRAKLHEQGKQARIRQGGTPVNEETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDD 814
            MPPK+ K  KK+ + +K ++IEDKTFGLKNK KSK+VQKYI +V ++V         +  + +K A+K AK   + EL  LF+EAL    G KK      K K +  A++  A   Q+      F+ +E                                TLE +IE QRAK+  +G+       GTPV EETLAKW+ DR  ++      +V AE++KK  GKGL+VLSG+ L+ YD +LF DD
Sbjct:    1 MPPKKNKESKKSESKRKDKIIEDKTFGLKNKKKSKTVQKYIQSVTSNVKNGRGAAEEEKRRQEKKAAKIAKMQADEELRILFNEALDGSLGPKKAKTKKDKQKEQAAALKKDAADSQKNLKDYPFIADEMLAMTGMLNELSPQELEEELQTFIRTGVSTRLTLEQVIELQRAKMRSEGRV------GTPVTEETLAKWREDRAERRRQANAERVAAELRKKKGGKGLAVLSGKDLFTYDRSLFVDD 240
[Close]
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Match: A0A7S4K466_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K466_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.740e-20
Identity = 95/225 (42.22%), Postives = 126/225 (56.00%), Query Frame = 2 
Query:  239 KQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCTEQQRASDAAKNK--KLASKEAKKAQEAELSALFDEALLTG-------AKKGGVAGKGKGEPIAVETKA------KVVQETFVIEEGDK---------TLEDLIEEQR----AKLHEQGKQARIRQGGTPVNEETLAKWKADRKAKKLAEERRK-VQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAV 826
            K ++EDKTFGLKNKNKSK VQ++I +V   V  ++ +   D  K K  K+A K    A++AE  ALF EAL+ G       AK G V  KG+      E K       K++ +    E  D+         TLED IE QR    AKL   GK+      GTPV  ET   W+ +RK K+ A+E +K V+AE+KKK  GKGLSVLSG+ L++Y   LF+DD +A+
Sbjct:   40 KAVLEDKTFGLKNKNKSKKVQQHIQSVTKGVMNSDGRSKRDDEKKKAAKMARKXXXXAEKAEQEALFGEALMFGKNKKALDAKSGKVEAKGRDHDDGDEKKGGTSRAMKMMYQMDAKEMEDRLREDPNYVPTLEDEIESQRQAMVAKLKASGKK------GTPVTPETFKAWQ-ERKRKRHADEAKKMVEAELKKKKGGKGLSVLSGKDLFEYKKELFKDDDEAL 257
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTJ1_ECTSI5.900e-11288.74DFRP_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835ZLI2_9STRA1.600e-4453.95DFRP_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S3M6K0_9STRA2.770e-2539.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2BQG9_9STRA6.920e-2441.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1BEE4_9STRA2.190e-2337.90Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6T7LTW9_9STRA3.420e-2340.17Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7R9VNV0_9STRA6.830e-2240.82Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A6T6H7B8_9STRA3.820e-2137.85Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2R4K8_9STRA4.950e-2138.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4K466_9STRA1.740e-2042.22Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:393488..400731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTJ1
Preferred nameZC3H15
PFAMsDFRP_C,zf-CCCH
Model size1852
Max annot lvl2759|Eukaryota
KEGG koko:K03243,ko:K06185
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0002181,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0023052,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0033036,GO:0034097,GO:0034613,GO:0034641,GO:0034645,GO:0042221,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141
Exons10
Evalue1.74e-116
EggNOG OGsCOG5252@1|root,KOG1763@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005810.1
Descriptioncytokine-mediated signaling pathway
Cds size777
COG categoryL
BRITEko00000,ko00001,ko03009,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.117.1prot_P-littoralis_Contig86.117.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 395119..400541 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791733.8334744-UTR-P-littoralis_Contig86:393487..3942631680791733.8334744-UTR-P-littoralis_Contig86:393487..394263Pylaiella littoralis U1_48UTRP-littoralis_Contig86 393488..394263 -
1680791733.847652-UTR-P-littoralis_Contig86:395009..3951181680791733.847652-UTR-P-littoralis_Contig86:395009..395118Pylaiella littoralis U1_48UTRP-littoralis_Contig86 395010..395118 -
1680791733.9717243-UTR-P-littoralis_Contig86:400541..4007311680791733.9717243-UTR-P-littoralis_Contig86:400541..400731Pylaiella littoralis U1_48UTRP-littoralis_Contig86 400542..400731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791733.8574178-CDS-P-littoralis_Contig86:395118..3951691680791733.8574178-CDS-P-littoralis_Contig86:395118..395169Pylaiella littoralis U1_48CDSP-littoralis_Contig86 395119..395169 -
1680791733.8670511-CDS-P-littoralis_Contig86:395488..3955961680791733.8670511-CDS-P-littoralis_Contig86:395488..395596Pylaiella littoralis U1_48CDSP-littoralis_Contig86 395489..395596 -
1680791733.876214-CDS-P-littoralis_Contig86:396145..3962381680791733.876214-CDS-P-littoralis_Contig86:396145..396238Pylaiella littoralis U1_48CDSP-littoralis_Contig86 396146..396238 -
1680791733.8895726-CDS-P-littoralis_Contig86:396585..3966661680791733.8895726-CDS-P-littoralis_Contig86:396585..396666Pylaiella littoralis U1_48CDSP-littoralis_Contig86 396586..396666 -
1680791733.9040887-CDS-P-littoralis_Contig86:397044..3972151680791733.9040887-CDS-P-littoralis_Contig86:397044..397215Pylaiella littoralis U1_48CDSP-littoralis_Contig86 397045..397215 -
1680791733.9194646-CDS-P-littoralis_Contig86:397873..3979421680791733.9194646-CDS-P-littoralis_Contig86:397873..397942Pylaiella littoralis U1_48CDSP-littoralis_Contig86 397874..397942 -
1680791733.9342234-CDS-P-littoralis_Contig86:398505..3985981680791733.9342234-CDS-P-littoralis_Contig86:398505..398598Pylaiella littoralis U1_48CDSP-littoralis_Contig86 398506..398598 -
1680791733.9446068-CDS-P-littoralis_Contig86:399358..3994151680791733.9446068-CDS-P-littoralis_Contig86:399358..399415Pylaiella littoralis U1_48CDSP-littoralis_Contig86 399359..399415 -
1680791733.9587321-CDS-P-littoralis_Contig86:400487..4005411680791733.9587321-CDS-P-littoralis_Contig86:400487..400541Pylaiella littoralis U1_48CDSP-littoralis_Contig86 400488..400541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.117.1

>prot_P-littoralis_Contig86.117.1 ID=prot_P-littoralis_Contig86.117.1|Name=mRNA_P-littoralis_Contig86.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=259bp
MPPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQNSVNCT
EQQRASDAAKNKKLASKEAKKAQEAELSALFDEALLTGAKKGGVAGKGKG
EPIAVETKAKVVQETFVIEEGDKTLEDLIEEQRAKLHEQGKQARIRQGGT
PVNEETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDY
DATLFEDDADAVDNATMKQRNDEDEDAEGRQDTGEVRGRGNNQQQQQQQQ
SSSSHHQH*
back to top

mRNA from alignment at P-littoralis_Contig86:393488..400731-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.117.1 ID=mRNA_P-littoralis_Contig86.117.1|Name=mRNA_P-littoralis_Contig86.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7244bp|location=Sequence derived from alignment at P-littoralis_Contig86:393488..400731- (Pylaiella littoralis U1_48)
AGGCTTCTCTCGTAACATCACAGCACGAAGCAGAGTACGTTGAAGCAACA
CAGCGACACAGGAGTGCGCAGCTCTTCCGAGAGGAAAGGCGAAGGGAAAC
GGGGAAGCTACACAGGGAGGAGCCGCAAAACAAGGACGTGTTGAGGCAGG
AGTCATATTTGCCGGTGCAGCCTGCAATCACTGATCAATCATGCCGCCAA
AGCAGCAGAAGGGCAAGAAGGCTGTCGCCACGAAGAAGAAACAGGTAAAT
GTGCATGACATCATCCATATGATACGATATCCAGGTCCTTGTTCCACCCC
TTATCCTAGTTACCATCCCATTGCTGCACGTGTCCGCGGGTCGCACTCGT
ATAGTATTTGTTTGTGAATCAAGGACGGGGTGAGGCCGTTGTTTGTAGCA
TGCAGCGAGGGAAGAGATTTCGAGTACCCCGCACCCCGGACCACGGTTCT
ACTGCTGTTGTTGACTTTTCCAACCCTTTTTCACAGCAGTACAAGGAACA
AAAAAAAAAATAGAGAAACTAAAGACTCCTGTGTTGACTTCCCCCTGTGT
GACCCCAGTTGGAGCGTCGACCTACCCCAAAGGTGCAGAGTGGTGTCCAA
TTAAAGGGATGACAACACACACACACACAATTGTTATCGTGTGCACTCAA
TGTTCGCCGAACAACAGACGAGACGCTTCTGAAATCTTCAGGGCGGTCGA
CATACGGTATTCGTATGATGTATATCGTCTGTCAGGCATGACCAATATTA
GAGGCGTTGCGCCTTTTGGGTTTTGTCTTTTTTTCTCTATTCCCTACGCT
CTCAGGCTGTTCGTACTTGAGGTTTGTCCGTCCAGTGTCGTTTCTGCCGT
GAGGGCGCGACGAAACCACTACAAGGGGCATGCCAGAGATGTCTTGAACT
GAGATTTGTCCCGGTATGGGGAATGATCACTCCAGTTTCCGTTTCAGTTG
AAACCCCCACACACGGCACTAAGTTCTCTGAACACGGGCAAAAAATGGTG
TATGATACAGCAGGCGGCATGGTGTTGCTAAGGCTTGCCGCCGAGTTTGG
GCGGGGGGGGGGGTCGAGGTGTCTTCGGCCGTGGTCCTCTTGAAAATAAT
CTGCCGCTCCGGCAGGCAGCGAGCGCATTGAGGAGACCGCTACTTGTACG
ATGTATCACACAAAGATAATGCAAAGTACTTTGAAGTACCGTGCGCGTGG
TCGTCAAAGAAGCAGTTCGCCCCTCCCACCTTCTGACGCCATAACCTCCT
TTGACCACTGTTGTCGACGTTTTGCGTGCGTTGGGTTGTGGCTTTCATGT
GATGATGCTATTGCAGCTGATCGAGGACAAGACCTTCGGCCTCAAGAACA
AGAACAAGAGCAAGTCCGTCCAGGTATGCATGTGGACGGTCAAACACGCC
CTCTTGACAGTCAAACACGCCCCTTATAACGATCATCCCTCTGACCAAAA
GACTTGCGTGCGTTACAGACAAACAGTAGAAGTAGACGCAACCCCCCCTT
GTCCTTTTCCTTTCGTCAGCAACTCTCAGGGAGCCTTTTTGAACTGTCTT
GTATTTTGTACATTCCAATTTGTAATAACCGGTCGCCCCGGTGGTTCAGT
TGGTTATCCACGCAACCGTCTGACATTTACGCGTGAGTTCGAATCCCAGT
GCAGTACCACGATCTGTGGCTTTTTCTCGCATTGTGCGTGAAAGTGGAAA
GCGATCAATTCGTGAGTAGACAAAATTCGATCGTACCATCGACGAGGGAA
AGCGATTGCTGTCCCCTTTCTCGCGATAAAAGCTCATCCAGAAAGGCAAG
CACCGCAGAGGGAAGTGGAGAAAAAAAAAAAAATCCTGTGTTGACTTCTC
CCTGTGCGGCCCCGGTTGGAGCGTCTACCTACTACCGAAAGGTGTAGAGT
GGCGCCCAATGAAAGGGATGACAACACACACACACATTCCGGGCCAGCTC
TCGCGGATCTGCGACAGAGAGTTCGCAGCTCTGCTTGGATCTTGAATGAG
TCGTTCATCATGATGAACACCATGCTGACTGCTTCGCACTAGATTACTTC
GAAGTGTATCATATGGTAAGCCTAGAGCTAATCGTGTACCCGCTCCTCCA
TTGCTTGTCTTGAACGGCGTGATGGGTTTCCAGAAATACATCTCCACCGT
ACAGAACAGCGTCAACTGCACGGAACAGCAGCGTGCCTCAGATGCTGCCA
AGAACAAGAAGCTGGCGTCCAAGGAGGTATGGTGTTTCTTTGAATGGGAT
ATCCGGTGTTTACCTCCTGCCTGACTTGGGCGTAACGCGTCGAGACCAGG
CGTTCCACTCGCACTGGAAGGGTGTGATCGTACCGGAGAATCAGCGTTTC
ATTTTTCATTTTTTTATTTCCGTATGAAAATGTGTACCGATCTTTTTCAA
GACTACGTGGGATTGCTCACACTGTGCTCTGTGCACATAATTTGCACTGC
ATTGCAGCTTTGGTTTTGTGTGTCAAATGTCTAGATACGAATGCTGGTTC
TGATGAGCATCGCCACCCGAAACCCATGTGAAAGTTTTTCGTGCACGTAC
CTGGTACATGTTTTTTTTTGCACCTGCAGAAATACTGTCATTCGGTGTTG
CCCAAAACTTGTCACTCCGCCTCGCGAGTCCTGTAATGCACTTTCACTCG
GTGCTTCGCGGCGGCGGGGAACTGATACAGAAGGCCAAAAACAAGCCACC
ATTGGTGGCACCAATCCCCGCGCGCCCCTCAGCGCACAGCCCGTTTTTTC
TCACTCCGTATCTTTGATTGGTTTTGTTTCGTGTCTTAGGCGAAGAAAGC
CCAGGAGGCGGAGCTGTCGGCCTTGTTCGACGAGGCTCTTTTAACAGGCG
CAAAGAAGGTGCAGTGTAGCCGTCACTTCAGCTGTCCTGCAAGGGACGAC
ATACCGTATACCCATCGTTGAGAGGAGGGAGGGGGCGAGATACAGAACAA
AAGTATGGTGCAAGTCAGTTTGCGAAAGGATGGGGGGAGAAAGCGTGAAC
GAAACGTGCAACAGCCATGCGGCATCGAACGTATTGTTCGGTTTGCCCCC
CGTCTGCAGGGCAGGTGCAGTTGTGGCCCAAAAGTGGCTGTGCCACCCAA
GGAAGGGGTGGGCGGCCCGCGAAACATGTTTTTTACCATCTACTTCAGGG
TATGCTATCGGTTGTGTTGGCTTCGCCTCGTTGTGGATTCAGTGCAGATG
CACACGTCGGACCCTTGTGCACGTTAGTTTCGAACTTTCAAAATCGCCTC
GATGGCGATGTGCTGTCCCTCACCGCCGGCCCCAGCGTCCTCTTGTAAAC
CTTTTTCATGGGCAGTCCGACGAGACTACTCCCGAATCTCCACCCGATAA
GCGCAAGATAAATGGCGTCCTGAGTTACAGGTGTGTGACTCCGGGAGGTA
GGTCTTGATGAAGAGCTGGATTTGAAATTGTGTGTGAGGGATGGGCACAG
TTATCTGAACTACTCCCGCGATCTCGAGCTATCGTTGATCCTGTCGTGTG
ATGCGCTACGTGACAGGGAGGCGTTGCCGGAAAGGGGAAGGGTGAACCCA
TTGCCGTTGAGACCAAGGCCAAGGTGGTCCAGGAGACCTTCGTCATCGAG
GAGGGAGATAAGACCTTAGAGGACTTGATCGAAGAGCAGCGAGCGAAGCT
ACACGAGCAGGGCAAGCAGGCAAGAATCAGACAGGGGGTGGGAAGGGGGG
TACGACCGGCAGATTCACAAGTGCAATATACGCCCTCTCTGGCAAAAATT
TCCGCAAGGCTTAAGGCCCAGTCGAGCCTCTGTCGTTCCTGGGTGGTATG
CTGAGTACAGTAACCACACAGCGCTCTTGTCCTGAAGCGTTTCATCTCGT
GCGCACGCCTGTACAGTGTCCGTGTGTGGACTTAAGTTTTGGTTACACCC
GTGTGTGGACGTACGTTTTGGTTTCGGCTGTGAGGTGTTCCCAGAATCCT
ACCCAGGGTAAATAAACTGCGTGCAACCTATTCGCCGCTGTTCCGGCCGT
ACCCCGTCACATCACCGTCCTCTCACTTCCACCTCGCTACCGACGCCGCT
TCATTGCACGCACAGGGAACCCCCGTGAACGAGGAGACCTTGGCGAAATG
GAAAGCGGATCGGAAGGCGAAGAAGCTTGCAGAGGAGCGCCGCAAGGTAA
TGCTTGGTAGTCTCCACCGCTGCGGTGGCGTCGCTTGCTCTTGGGTTAGA
TCGATTCTGCTTGGCCTTCTTGTGTGCCACCTTTTCGTCTCAGTCAAGCA
CATGCAACAAAGCGACATGTAACGAAGCGTGATGTGAGTTGTCCACACCA
TCAGCACAGATAGTTTGTAGCGTCGACTGTGTACAGTGAGGTTCTTGACC
AATTTTGCAAACGCTTGCGTCTGTTGAACAACCGATGTGTTACGTAAACC
GGGTCCTTGTGTCCACATGAACTACGACTATGCGCCGGTGTACATAATGC
ATATTCCTTGTGTGCGGTGTGGTCTGCTCGGGCGTCGCTTCAGGTGCAGG
CGGAGATGAAGAAGAAGAACAAGGGCAAGGGGCTCTCTGTTCTCAGTGGC
CGAGCCCTCTACGACTACGACGCAACTCTCTTCGAGGTAAGAAAAAAGGA
AACCGCCGCTGACAATATTTACAGGCGGCGTGCACAACCGATGTTGTAGA
CAGTTCGACACATCGACGCTGTATAGAGTTAAAAAAACATCGACGCTGCA
TAGAGTATAGAGTAGCAGGAATCAGTATCGGCTATCTCCTTGTCGGGGGA
CTGGTGCCACCGCTACCGCATAAACAGGCCGTGTGCATCCAGATACCCGA
GGCCGGGGTTGTGGGAAGAAGTAGAAGCATTCGTCCTGGGATGTCAACTC
GTAACGGTGGTGGTTATGTCGTTGAAGTGGAAACGTGACGACGCCCGTGC
CGATCTTCATCGACACGACTCTCTGATCGTAAGGTGTGCTGTTGGTGCCC
TATTTTTCCTTGCCGTCGAGACGCGGTTCGACATGGCTTGGTGTCGCCGT
GTTGTTGATTCCTTCGACTGTTTTTGTATGGCTCCCGTCCGGTGAGTTGG
GCTTGTTTCCCCGCCGCTCAGCGTGCTGTCGCCGTGTTTGGTAACTCGTA
TTGTGCGGTGCTGTCTGCCGTGCGATTGCCTTCAGGACGATGCGGACGCT
GTGGACAATGCCACGATGAAGCAGCGTAATGATGAGGACGAGGACGCAGA
GGGCAGACAAGACACCGGAGAGGTGAGAGGGAGGGGAAATAATGCATTTT
TTCCTGGTCGATGCATCATATCTCCTCTGCGCATTTCGTGACATGTCACG
AAATGCGCAGAGATCTGCGACATTTCGTGACATTTCGTGACATAAACAGC
GTAGAATGCCGCACTAGGCAGTTACTCATGTAGCCCCGGCACACGAAGCC
TCCCAAGGCACCTGCCGAGACTCAAACCCACACCCAGCCTCCTCCGCCGT
ACCGAGATGAAGGCAATCCGTGCAGTGGAGGAGCGTAGGTGAACGTGACA
CGCTGCAGAAGAAGCAGCAGCGGCAGTGTACGTATTGTTATCTTGAGTAT
GTACTGTCGCAGCAGCAGCAACAACAGCAGCAGCAGAGCTCAAGTAGTCA
CCACCAGCATTAAAACGAGTACCAGCAGTAGCACCAGCTCCGATCGGCAG
TCGTTCTCTTCCTTTTTTCTCTGTTCCATTCCACGTACATTATCTCCTTC
TTGCCGTTGAGCTTTGCGTCCTGTCGGTGACGAGATCGTTTTTGGATTTG
AACCACCCGCCCCAACGACGACCTCGTATCAAACCCATGCCGGCGCGCCC
TGCCTTGTACAGACACCACGACCACGACTATCTACTGTTGTCCCTCTTGG
CAGATCCGGAGCACGTTTTCTTGCCACGCCGTCGTATTGTGCCCACTTCA
GAACGTCGACCCCTTTCAGCAACAAAAATATAGCACGTCGAGCCGTTCCA
ATGGCAACCGTTGGACCGCCTGCATCAGAACGTCGAGATGCCTCCCTTTG
GTAGCTCACGTGTCGAACTTTAGTCACATGCTAGACCAGGACAAGTATCA
CTTTAATGTTCATGCAATGTTGCTGCTAATACTGCAGCAGCAGTCGTTTT
GCGCTCAGCGCTTGGGTACTACTGATGTACAGCAGTCCTTTTACTACAGC
AGCAAAAAAACAAGCACAAGCAGTAGCGTAGTTTCAGCACAGCTGCTCCT
AATGATAGATGATAATTTCAGCCCCCCTGTTATTACGTTATTACCCACCA
TCCAATGAACAATGAGTTCGTCCGAGAGATGGCACGGCAGATGTTCCAAT
CTCTACCCATCTTCTGGAATAAACCGCACGTGAATCGCTGTCGGGTTGTG
AAATTGTGATTGAGCGAGTCAAAAAAGATGTACCTGGGACAGAGAAAGTC
CCAGAGGGGCTCCGGGTGCTGGAACTTTTTTCTTTCTTTTTTTTCTTTTT
TTTTTCCAAGCACCGGAGGTATTGTGCTGCCGAGTGAATTATCTGTGCGG
AGTCCTGTTTGTTGTTACAAAACGGTCAGCTTTTATTAATGGCATGAATT
TGCGTTGCCTGTGGCTGTCGCGGCGCCCTTCGGCAATTTGTCATCCTCGT
GGGGGTTATGGAAAAAGCGATATGTAGGAAGGAGATTATTTGTGCCCGAC
GAGGCTTGTATCTAGTCTCGTCACCGACCGGGCTTGTGCTCCAGCAGTTT
GTTTGTCTTCCCCTGTGAATGGAAGTATTGTAGCCAGACCGATTACATTG
ATAAAAACTTGTTAAATTTCGGATTGTCGCGGTGGTGTGGTCTGCTGCAA
GATACCTGGAAGTTGGGGAATGTCCGAGCGAGAACCCATGGCTTGTTTTG
TACGAACATCGTCCTGTTCGAGTGCAAGCCGTCGTAGACCTGTTGTGTCT
CAGCCGTGTTTAATTGTGCGTAACGTGATCGGCTGTTTTATCGTACAACT
TCTACATCTACTCAATCCGAGGCCTTGAGAGAGAGGTATGTCGTCAGGCA
AGGTTATCAAGCCACGAGGCACTCGTCGTGCCTACAGACAAAAGGTCTGT
ACTTACGAATAGTGCGCCTGGCTGACGCGGGGTTTGCGTCGAGAGAAAAG
TCCACCCCATGCAGGAGGACCGCCCACCTGAGACAGACAGGACTCGGGGG
CAGTGCTTCGGATAGGCCGCAGGCCAGGCGTGGGGCAGCCGCCAGGCTGC
CGCACATATTATACATGCCGAAACACGTCTGGCAATGGTCCCCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig86:393488..400731-

>mRNA_P-littoralis_Contig86.117.1 ID=mRNA_P-littoralis_Contig86.117.1|Name=mRNA_P-littoralis_Contig86.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=777bp|location=Sequence derived from alignment at P-littoralis_Contig86:393488..400731- (Pylaiella littoralis U1_48)
ATGCCGCCAAAGCAGCAGAAGGGCAAGAAGGCTGTCGCCACGAAGAAGAA
ACAGCTGATCGAGGACAAGACCTTCGGCCTCAAGAACAAGAACAAGAGCA
AGTCCGTCCAGAAATACATCTCCACCGTACAGAACAGCGTCAACTGCACG
GAACAGCAGCGTGCCTCAGATGCTGCCAAGAACAAGAAGCTGGCGTCCAA
GGAGGCGAAGAAAGCCCAGGAGGCGGAGCTGTCGGCCTTGTTCGACGAGG
CTCTTTTAACAGGCGCAAAGAAGGGAGGCGTTGCCGGAAAGGGGAAGGGT
GAACCCATTGCCGTTGAGACCAAGGCCAAGGTGGTCCAGGAGACCTTCGT
CATCGAGGAGGGAGATAAGACCTTAGAGGACTTGATCGAAGAGCAGCGAG
CGAAGCTACACGAGCAGGGCAAGCAGGCAAGAATCAGACAGGGGGGAACC
CCCGTGAACGAGGAGACCTTGGCGAAATGGAAAGCGGATCGGAAGGCGAA
GAAGCTTGCAGAGGAGCGCCGCAAGGTGCAGGCGGAGATGAAGAAGAAGA
ACAAGGGCAAGGGGCTCTCTGTTCTCAGTGGCCGAGCCCTCTACGACTAC
GACGCAACTCTCTTCGAGGACGATGCGGACGCTGTGGACAATGCCACGAT
GAAGCAGCGTAATGATGAGGACGAGGACGCAGAGGGCAGACAAGACACCG
GAGAGGTGAGAGGGAGGGGAAATAATCAGCAGCAACAACAGCAGCAGCAG
AGCTCAAGTAGTCACCACCAGCATTAA
back to top