mRNA_P-littoralis_Contig86.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.110.1
Unique NamemRNA_P-littoralis_Contig86.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KDE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE9_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 5.010e-63
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1
Query:    1 GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGK 276
            GEIFPGRVCPVPTCPTPKHLIVRYKNGR FVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGK
Sbjct:   26 GEIFPGRVCPVPTCPTPKHLIVRYKNGRPFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGK 117          
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5JB82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB82_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.930e-32
Identity = 59/106 (55.66%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGKQKYDNVHVYSTTAW 318
            GE+FPGR+CP       K L+ RY NGR FVVC   ++DDP++CQFTAN FGKDR      S IACI C V VE  LS+GR  G T+P +GK  Y NVHVY  T W
Sbjct:   33 GEVFPGRLCPEDN----KDLLKRYTNGRLFVVCLGNIKDDPSTCQFTANCFGKDRVKPGEESKIACIFCTVLVEHTLSLGRSTGRTDPVTGKLIYQNVHVYFDTCW 134          
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KDP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP4_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.050e-26
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 GEIFPGRVCPVPTCPTPKHLIVRY-KNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGKQKYDNVHVYSTTAW 318
            GE++PG VCP+      K L+ +Y K GR ++VCS  V++DP+SC F+AN FG+DR      S IAC  CDVP EF  SIG P G+ NP +GK  ++N HV+    W
Sbjct:   32 GEVYPGLVCPLDQ----KVLLKKYTKTGRPWIVCSGNVQNDPDSCHFSANLFGRDRVKEGDKSKIACQICDVPAEFTPSIGEPTGEKNPLTGKPVFENTHVFFPHCW 134          
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KBR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR6_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.460e-24
Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGKQKYDNVHVYSTT 312
            GE+FPGR+CP       K L+ RY NGR FVVC   ++DDP++CQFTAN FGKDR      S IAC  C VPVE  LS+GR  G T+P + K    +    ++T
Sbjct:   33 GEVFPGRLCPEDN----KDLLKRYTNGRLFVVCLGNIKDDPSTCQFTANCFGKDRVKPGEESKIACTVCTVPVEHTLSLGRSTGRTDPVTRKLSESSTRTSTST 132          
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KJM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.000e-23
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 GEIFPGRVCPVPTCPTPKHLIVRY-KNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGK 276
            GE++PG VCP+      K L+ +Y K GR ++VCS  V++DP+SCQF+AN F +DR      S IAC  CDVPVEF  SIG P G+ NP +GK
Sbjct:   32 GEVYPGFVCPLDR----KVLLKKYTKTGRPWIVCSGNVQNDPDSCQFSANLFSRDRVKEGEKSKIACKICDVPVEFTPSIGEPTGEKNPLTGK 120          
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5JHW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.380e-21
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 GEIFPGRVCPVPTCPTPKHLIVRY-KNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNP 264
            GE++PG VCP+      K L+ +Y K GR ++VCS  V++DP+SC F+AN FG+DR      S IAC  CDVP EF  SIG P G+ NP
Sbjct:   32 GEVYPGLVCPLDQ----KVLLKKYTKTGRPWIVCSGNVQNDPDSCHFSANLFGRDRVKEGDKSKIACQICDVPAEFTPSIGEPTGEKNP 116          
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KRE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.620e-20
Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPV 219
            GE+FPGR+CP       K L+ RY NGR FVVCS  ++DDP++CQFTAN FGKDR      S IAC  C VPV
Sbjct:   33 GEVFPGRLCPEDN----KDLLKRYTNGRLFVVCSGNIKDDPSTCQFTANCFGKDRVKPGEESKIACTVCTVPV 101          
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.620e-18
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  363 HCTAATQEVIGTPCAAYDPENPFDDLKEGCTGDICEGDTIIRSWALQDPPVGLHARCAKRKQAALIAEFIAEKSFRKATGTTAEDDAKAPSV 638
            + T AT E++G PC+ +DPE   DD+KEGCTGDI EG+ +++ W   DPP+ LH  CAKR   A + E + EK   K  GTTAE ++  PS 
Sbjct:  133 NATLATGEIVGRPCSCFDPEKNVDDIKEGCTGDIQEGEYVVKDWT--DPPLHLH--CAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSA 220          
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-11
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 3
Query:  312 CLGKRATDPVTGKTVLAHCTAATQEVIGTPCAAYDPENPFDDLKEGCTGDICEGDTIIRSWALQDPPVGLHARCAKRKQAALIAEFIAEKSFRKATGTTAEDDAKAPSV 638
            C G + +D    K    + T AT +++G  C   +P +  +D+  GCTG+I EGD +++ W   DPP+ LH  CAKR   A + E +  K   K  GTTA+ ++  PS 
Sbjct:  120 CCGAKTSDGEKYK----NATLATGDIVGRACKCSNPASDVEDITHGCTGEIEEGDYVVKDWI--DPPLHLH--CAKRLWRAKVDEILTSKQNLKDIGTTAQKESAQPSA 220          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KDE9_9PHAE5.010e-6398.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB82_9PHAE4.930e-3255.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDP4_9PHAE1.050e-2647.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBR6_9PHAE1.460e-2449.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM8_9PHAE4.000e-2351.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHW5_9PHAE2.380e-2150.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRE8_9PHAE4.620e-2057.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE1.620e-1847.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ5_9PHAE1.090e-1135.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:381550..382900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size639
Hectar predicted targeting categoryother localisation
Exons4
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791733.6525612-UTR-P-littoralis_Contig86:381549..3816311680791733.6525612-UTR-P-littoralis_Contig86:381549..381631Pylaiella littoralis U1_48UTRP-littoralis_Contig86 381550..381631 -
1680791733.6635907-UTR-P-littoralis_Contig86:381794..3818351680791733.6635907-UTR-P-littoralis_Contig86:381794..381835Pylaiella littoralis U1_48UTRP-littoralis_Contig86 381795..381835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791733.6759875-CDS-P-littoralis_Contig86:381835..3819561680791733.6759875-CDS-P-littoralis_Contig86:381835..381956Pylaiella littoralis U1_48CDSP-littoralis_Contig86 381836..381956 -
1680791733.689525-CDS-P-littoralis_Contig86:382203..3823181680791733.689525-CDS-P-littoralis_Contig86:382203..382318Pylaiella littoralis U1_48CDSP-littoralis_Contig86 382204..382318 -
1680791733.708387-CDS-P-littoralis_Contig86:382620..3829001680791733.708387-CDS-P-littoralis_Contig86:382620..382900Pylaiella littoralis U1_48CDSP-littoralis_Contig86 382621..382900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.110.1prot_P-littoralis_Contig86.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 381836..382900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.110.1

>prot_P-littoralis_Contig86.110.1 ID=prot_P-littoralis_Contig86.110.1|Name=mRNA_P-littoralis_Contig86.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANK
FGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGKQKYDNVHV
YSTTAWASAPPTPSPERLSWRTAPPPRKKSSERPALRTTQKIRSTTSRRG
APVTSARGTRSSGRGLFRTLL*
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mRNA from alignment at P-littoralis_Contig86:381550..382900-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.110.1 ID=mRNA_P-littoralis_Contig86.110.1|Name=mRNA_P-littoralis_Contig86.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1351bp|location=Sequence derived from alignment at P-littoralis_Contig86:381550..382900- (Pylaiella littoralis U1_48)
GGTGAGATCTTTCCGGGTCGTGTCTGTCCCGTGCCAACTTGCCCCACTCC CAAGCACCTGATCGTTCGGTACAAGAACGGCCGGTCCTTCGTGGTCTGCT CGAATCAAGTTCGCGACGATCCCAACTCCTGCCAGTTCACGGCTAACAAG TTCGGCAAGGACCGCGCCGTCGGCAAAGGACCGTCTACAATCGCCTGCAT CACCTGCGACGTGCCTGTGGAGTTCGTCCTCTCCATCGGCAGGCCCAACG GCGACACCAACCCGACCTCCGGAAAACAAAGTAGGTTCAAACCTCGTATC TTCTCGGCGTTATTTGGATGTAACCTTTCTGTTACTTATCTTCCTCTGTT TTAGCTGCGTACCTTCTGCTCTCCCTTCTCTTCTCATTCCATAATAATAA CCCCATGCATCGTATGTACGACGCTTTTCCCCGTATCTTCTCGGCGTTGT TTGAGTGTAACCTTTCTCGAAGCTCCCTCTATTTTGGCTGCGTGCTTTCT GCTCTCCCTGCGATTGAATGTTCTTTCGCACACTGACCGTCCTCCGCGCA ATTTTTCCGTCCTCCCCCGTGCTCAATTGCAGAGTACGACAACGTCCACG TGTACTCGACGACTGCCTGGGCAAGCGCGCCACCGACCCCGTCACCGGAA AGACTGTCCTGGCGCACTGCACCGCCGCCACGCAAGAAGTCATCGGAGTA AGAGCTGTTCGTTTTTTTTTGTTGCCACCAAGTATTCCTTTACCACTGCT GTCGTTGCATGTTATCCTTTCTGTTTTCGTTTCTTCTTCACAATTCATGC TCTCGCGTGACCTCAAGGCTTCTTCTTGCTTGCATTCGTTGGCATTATTG GCGCAACCTCTCCAAAGTAATACTTTTTTACTTTTCTTTCTTTGCTTCCA TCCCCTCGCTCGTCTACTTCTTCACGCACACATGTTTCTACAAGACGCCC TGCGCTGCGTACGACCCAGAAAATCCGTTCGACGACCTCAAGGAGGGGTG CACCGGTGACATCTGCGAGGGGGACACGATCATCAGGTCGTGGGCTCTTC AGGACCCTCCTGTAGGCCTGCACGCCCGCTGCGCCAAGCGCAAGCAGGCG GCACTGGTGCGTCTGTCACAATGCATAAATTTTGTTACTTTGCAAGGGTC ACCCTCATTTTTGCATGCAGCACGCTATCCCCTCACACATGGCATTTGTC TGCATGATGTGTACAAACCTAACGCAAATCCGCCGTTGTTCCCATGCCGT GTGCACAAACATGCAACAGATCGCCGAGTTCATCGCGGAGAAGTCCTTCC GCAAGGCCACCGGCACTACCGCCGAGGACGACGCCAAGGCTCCGTCCGTG G
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:381550..382900-

>mRNA_P-littoralis_Contig86.110.1 ID=mRNA_P-littoralis_Contig86.110.1|Name=mRNA_P-littoralis_Contig86.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig86:381550..382900- (Pylaiella littoralis U1_48)
GGTGAGATCTTTCCGGGTCGTGTCTGTCCCGTGCCAACTTGCCCCACTCC
CAAGCACCTGATCGTTCGGTACAAGAACGGCCGGTCCTTCGTGGTCTGCT
CGAATCAAGTTCGCGACGATCCCAACTCCTGCCAGTTCACGGCTAACAAG
TTCGGCAAGGACCGCGCCGTCGGCAAAGGACCGTCTACAATCGCCTGCAT
CACCTGCGACGTGCCTGTGGAGTTCGTCCTCTCCATCGGCAGGCCCAACG
GCGACACCAACCCGACCTCCGGAAAACAAAAGTACGACAACGTCCACGTG
TACTCGACGACTGCCTGGGCAAGCGCGCCACCGACCCCGTCACCGGAAAG
ACTGTCCTGGCGCACTGCACCGCCGCCACGCAAGAAGTCATCGGAACGCC
CTGCGCTGCGTACGACCCAGAAAATCCGTTCGACGACCTCAAGGAGGGGT
GCACCGGTGACATCTGCGAGGGGGACACGATCATCAGGTCGTGGGCTCTT
CAGGACCCTCCTGTAG
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