mRNA_P-littoralis_Contig86.110.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KDE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE9_9PHAE) HSP 1 Score: 200 bits (509), Expect = 5.010e-63 Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1
Query: 1 GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGK 276
GEIFPGRVCPVPTCPTPKHLIVRYKNGR FVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGK
Sbjct: 26 GEIFPGRVCPVPTCPTPKHLIVRYKNGRPFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGK 117
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5JB82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB82_9PHAE) HSP 1 Score: 123 bits (308), Expect = 4.930e-32 Identity = 59/106 (55.66%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 1 GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGKQKYDNVHVYSTTAW 318
GE+FPGR+CP K L+ RY NGR FVVC ++DDP++CQFTAN FGKDR S IACI C V VE LS+GR G T+P +GK Y NVHVY T W
Sbjct: 33 GEVFPGRLCPEDN----KDLLKRYTNGRLFVVCLGNIKDDPSTCQFTANCFGKDRVKPGEESKIACIFCTVLVEHTLSLGRSTGRTDPVTGKLIYQNVHVYFDTCW 134
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KDP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP4_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.050e-26 Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 1 GEIFPGRVCPVPTCPTPKHLIVRY-KNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGKQKYDNVHVYSTTAW 318
GE++PG VCP+ K L+ +Y K GR ++VCS V++DP+SC F+AN FG+DR S IAC CDVP EF SIG P G+ NP +GK ++N HV+ W
Sbjct: 32 GEVYPGLVCPLDQ----KVLLKKYTKTGRPWIVCSGNVQNDPDSCHFSANLFGRDRVKEGDKSKIACQICDVPAEFTPSIGEPTGEKNPLTGKPVFENTHVFFPHCW 134
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KBR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR6_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.460e-24 Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 1
Query: 1 GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGKQKYDNVHVYSTT 312
GE+FPGR+CP K L+ RY NGR FVVC ++DDP++CQFTAN FGKDR S IAC C VPVE LS+GR G T+P + K + ++T
Sbjct: 33 GEVFPGRLCPEDN----KDLLKRYTNGRLFVVCLGNIKDDPSTCQFTANCFGKDRVKPGEESKIACTVCTVPVEHTLSLGRSTGRTDPVTRKLSESSTRTSTST 132
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KJM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM8_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 4.000e-23 Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 1 GEIFPGRVCPVPTCPTPKHLIVRY-KNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNPTSGK 276
GE++PG VCP+ K L+ +Y K GR ++VCS V++DP+SCQF+AN F +DR S IAC CDVPVEF SIG P G+ NP +GK
Sbjct: 32 GEVYPGFVCPLDR----KVLLKKYTKTGRPWIVCSGNVQNDPDSCQFSANLFSRDRVKEGEKSKIACKICDVPVEFTPSIGEPTGEKNPLTGK 120
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5JHW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW5_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.380e-21 Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 1 GEIFPGRVCPVPTCPTPKHLIVRY-KNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPVEFVLSIGRPNGDTNP 264
GE++PG VCP+ K L+ +Y K GR ++VCS V++DP+SC F+AN FG+DR S IAC CDVP EF SIG P G+ NP
Sbjct: 32 GEVYPGLVCPLDQ----KVLLKKYTKTGRPWIVCSGNVQNDPDSCHFSANLFGRDRVKEGDKSKIACQICDVPAEFTPSIGEPTGEKNP 116
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5KRE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE8_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 4.620e-20 Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 1 GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANKFGKDRAVGKGPSTIACITCDVPV 219
GE+FPGR+CP K L+ RY NGR FVVCS ++DDP++CQFTAN FGKDR S IAC C VPV
Sbjct: 33 GEVFPGRLCPEDN----KDLLKRYTNGRLFVVCSGNIKDDPSTCQFTANCFGKDRVKPGEESKIACTVCTVPV 101
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.620e-18 Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 3
Query: 363 HCTAATQEVIGTPCAAYDPENPFDDLKEGCTGDICEGDTIIRSWALQDPPVGLHARCAKRKQAALIAEFIAEKSFRKATGTTAEDDAKAPSV 638
+ T AT E++G PC+ +DPE DD+KEGCTGDI EG+ +++ W DPP+ LH CAKR A + E + EK K GTTAE ++ PS
Sbjct: 133 NATLATGEIVGRPCSCFDPEKNVDDIKEGCTGDIQEGEYVVKDWT--DPPLHLH--CAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSA 220
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.090e-11 Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 3
Query: 312 CLGKRATDPVTGKTVLAHCTAATQEVIGTPCAAYDPENPFDDLKEGCTGDICEGDTIIRSWALQDPPVGLHARCAKRKQAALIAEFIAEKSFRKATGTTAEDDAKAPSV 638
C G + +D K + T AT +++G C +P + +D+ GCTG+I EGD +++ W DPP+ LH CAKR A + E + K K GTTA+ ++ PS
Sbjct: 120 CCGAKTSDGEKYK----NATLATGDIVGRACKCSNPASDVEDITHGCTGEIEEGDYVVKDWI--DPPLHLH--CAKRLWRAKVDEILTSKQNLKDIGTTAQKESAQPSA 220 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig86.110.1 >prot_P-littoralis_Contig86.110.1 ID=prot_P-littoralis_Contig86.110.1|Name=mRNA_P-littoralis_Contig86.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp GEIFPGRVCPVPTCPTPKHLIVRYKNGRSFVVCSNQVRDDPNSCQFTANKback to top mRNA from alignment at P-littoralis_Contig86:381550..382900- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig86.110.1 ID=mRNA_P-littoralis_Contig86.110.1|Name=mRNA_P-littoralis_Contig86.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1351bp|location=Sequence derived from alignment at P-littoralis_Contig86:381550..382900- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig86:381550..382900- >mRNA_P-littoralis_Contig86.110.1 ID=mRNA_P-littoralis_Contig86.110.1|Name=mRNA_P-littoralis_Contig86.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig86:381550..382900- (Pylaiella littoralis U1_48)back to top |