prot_P-littoralis_Contig86.19.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig86.19.1
Unique Nameprot_P-littoralis_Contig86.19.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length83
Homology
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BLAST of mRNA_P-littoralis_Contig86.19.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.920e-15
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 0 
Query:    1 SASRLLLHDDIEPLATQQAKEVNMFERRGYKVTVVFDGATPPAKQDTSQGRMKRREESASAARRLAVQGGASASEVNRMAS 81
            +A  LLLHDD+ PL  + A EV+ FE RG+KVTVV DG+TPPAK+ TS+ R  +RE +AS AR L   GG   +E+N+ AS
Sbjct:   46 AARDLLLHDDVAPLVKECAAEVSRFESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGR-LTEINKKAS 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.19.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE6.920e-1554.32Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.1010coord: 3..83
e-value: 4.0E-9
score: 38.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..83
IPR029060PIN-like domain superfamilySUPERFAMILY88723PIN domain-likecoord: 20..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:51643..51891 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.19.1mRNA_P-littoralis_Contig86.19.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig86 51642..51891 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig86.19.1 ID=prot_P-littoralis_Contig86.19.1|Name=mRNA_P-littoralis_Contig86.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
SASRLLLHDDIEPLATQQAKEVNMFERRGYKVTVVFDGATPPAKQDTSQG
RMKRREESASAARRLAVQGGASASEVNRMASAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029060PIN-like_dom_sf