mRNA_P-littoralis_Contig10.131.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.131.1
Unique NamemRNA_P-littoralis_Contig10.131.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: D7FQE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE1_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.320e-55
Identity = 103/137 (75.18%), Postives = 112/137 (81.75%), Query Frame = 1
Query:    1 EPVVGVACERSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSEKRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLHLEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVE 411
            EPV+GVACE+SCMSLLATNLTIVFVVQLVVGNLTEVLIP++KYTMR+K+EKR D  HGH+                     IQRTQAEKGL+LEQYDPIMG LMDYAELAVQFGYITLFVV+FPLAPLLALANNYVE
Sbjct:  164 EPVIGVACEKSCMSLLATNLTIVFVVQLVVGNLTEVLIPFIKYTMRVKAEKRGDG-HGHDG------------VPVVSGKNIQRTQAEKGLYLEQYDPIMGALMDYAELAVQFGYITLFVVAFPLAPLLALANNYVE 287          
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: A0A6H5KW18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW18_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 4.420e-52
Identity = 102/137 (74.45%), Postives = 112/137 (81.75%), Query Frame = 1
Query:    1 EPVVGVACERSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSEKRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLHLEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVE 411
            EPV+GVACE+SCMSLLATNLTIVFVVQLVVGNLTEVLIP++KYTMR+K+EKR D  +GH+                     IQRTQAEKGL+LEQYDPIMG LMDYAELAVQFGYITLFVV+FPLAPLLALANNYVE
Sbjct:  684 EPVIGVACEKSCMSLLATNLTIVFVVQLVVGNLTEVLIPFIKYTMRVKTEKRGDG-YGHDG------------VPVVSGKNIQRTQAEKGLYLEQYDPIMGALMDYAELAVQFGYITLFVVAFPLAPLLALANNYVE 807          
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: A0A7S2UW13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW13_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.080e-28
Identity = 64/138 (46.38%), Postives = 87/138 (63.04%), Query Frame = 1
Query:    1 EPVVGVACERSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSE-KRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLHLEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVE 411
            +P VG      CM  LATNL I+++VQL+ GN+TEV++PYVKY M++++E K   DE G                    + + Q TQ E    LE+YD +M T+ DYAE+A+QFGY+TLFV + PLAPLLAL +N+VE
Sbjct:   60 DPDVGTCSGLDCMEALATNLVIIYMVQLISGNMTEVILPYVKYRMKLRAETKEKKDEKG-------------------PRERTQITQEEIDYALEEYDVMMSTISDYAEMAIQFGYLTLFVAAMPLAPLLALISNWVE 178          
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: A0A7S3XWN0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWN0_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 1.930e-18
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   31 SCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSEKRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLH-------LEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVE 411
            SCM  LA NL I+F+VQLVVGN+ ++++PYV+   R++ E   DD                          I+ T   KG         L+ YD IMG + DY  +A+QFGY++LFV +FPLAPL+ALANNYV 
Sbjct:   50 SCMRTLAKNLGIIFLVQLVVGNVQDIVVPYVRVKKRLRDE--LDD--------------------------IRNTGKTKGASPVEYEYTLDTYDNIMGPINDYISVAIQFGYLSLFVAAFPLAPLMALANNYVS 155          
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: A0A7S2RXH3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXH3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.740e-16
Identity = 49/132 (37.12%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   16 VACERSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSEKRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLHLEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVE 411
            + C  +C S L T L I+F+  ++ GNL EV++P VK  ++ K E +                             I+ T  EK    E YD ++GT  DYAE+ +QFGY TLF+ +FPLA +LAL NNY+E
Sbjct:  235 IRCYPNCFSELNTCLGIIFIANIIAGNLAEVVVPIVKARIKEKKESKG------------------------MVLDIKMTDVEKQFIAEPYDQLLGTFKDYAEMIIQFGYCTLFIAAFPLATVLALVNNYIE 342          
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: A0A7S3YMB0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMB0_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 2.570e-14
Identity = 52/135 (38.52%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   13 GVACE--RSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSEKRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLHLEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVE 411
            G  CE    CM LL  NL I+++  ++VGNL EV +P++K   +               +R+A            +  K   + AEK   +E YD +MGTL DY+E+AVQFGY+TLFV ++P+APL  L  N VE
Sbjct:  233 GKDCEGGADCMDLLGYNLMIIYLYYIIVGNLQEVGLPWLKKIWK---------------QRKAAKGGALGALSMGRGHKKFLSPAEKEFLMEPYDVMMGTLTDYSEIAVQFGYLTLFVAAWPMAPLFGLVANLVE 352          
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: A0A835ZD27_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD27_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.520e-14
Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 1
Query:   22 CERSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKY-TMRIKSEKRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLHLEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYV 408
            C  +CM+ LATNL  +F+ +L VGNLT+VL+P +K   ++ +S    D E                            + AEK   LE YD ++G   DYAE+A+QFGY TLFV ++PL+ L+A  NNY+
Sbjct:  442 CVDTCMNELATNLGAIFLTRLAVGNLTQVLLPLLKARALQRRSAAALDPER-------------------------MPSIAEKEYVLEIYDVMLGPFNDYAEMAIQFGYATLFVAAYPLSCLMAFINNYI 546          
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: A0A7S2Y160_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y160_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.050e-13
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   22 CERSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSEKRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLHLEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVE 411
            C  SCMS L+TNL  +F+ + +VGN+TEV +PY+    R K    ++D         A  D+               + AEK     +Y  ++GT  DY E+ +Q+GY TLFV ++PLA L+   NN++E
Sbjct:   58 CVGSCMSQLSTNLGTIFLTRCLVGNITEVGVPYL--AARAKESSESED---------AEPDRTP-------------SMAEKEFFASEYHVMLGTFDDYLEMVIQYGYATLFVAAYPLALLMCFVNNFIE 163          
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: A0A397F6J1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F6J1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.790e-13
Identity = 51/129 (39.53%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   25 ERSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSEKRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLHLEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVE 411
            +  C+  L  +L I+F ++L  GN  E ++PY+K  +  +  K    E G   +R  +A                   AE+ +HL  YD  MG   DY E+ +QFGYITLFVVSFPLAP LAL NNY E
Sbjct:   60 KGGCLFDLMFSLGIIFGLRLTSGNFFEAVLPYIKRKLAARFRKPDTSEDG--VQRHVSA-------------------AEEQMHLGAYDN-MGIFADYNEMIIQFGYITLFVVSFPLAPFLALLNNYFE 166          
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Match: H3GQ58_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQ58_PHYRM)

HSP 1 Score: 75.5 bits (184), Expect = 3.390e-13
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   25 ERSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSEKRADDEHGHEAERRANADKXXXXXXXXKKAKIQRTQAEKGLHLEQYDPIMGTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVE 411
            E  CM  L   L I+F++++VVGN TEV +PY+KY  ++ SE++A           AN ++        ++AK+   ++ +               DY E+ +Q+G+I LFVV+FPL PLLALANN +E
Sbjct:  660 EDDCMRELRDQLLILFLIRIVVGNTTEVAVPYLKYRYQLFSERKA-----------ANTEEKSGHNYIEEQAKLVPYESNEAFE------------DYNEMVIQYGFINLFVVAFPLTPLLALANNMLE 765          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQE1_ECTSI1.320e-5575.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW18_9PHAE4.420e-5274.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UW13_9STRA5.080e-2846.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3XWN0_HETAK1.930e-1841.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RXH3_9STRA1.740e-1637.12Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3YMB0_HETAK2.570e-1438.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZD27_9STRA9.520e-1438.46Calcium-activated chloride channel-domain-containi... [more]
A0A7S2Y160_9STRA2.050e-1335.38Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A397F6J1_9STRA2.790e-1339.53Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
H3GQ58_PHYRM3.390e-1336.43Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:501655..503769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQE1
PFAMsAnoct_dimer,Anoctamin,ERK-JNK_inhib
Model size416
Max annot lvl2759|Eukaryota
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
Hectar predicted targeting categorysignal peptide
Exons3
Evalue2.17e-56
EggNOG OGsKOG2514@1|root,KOG2514@2759|Eukaryota
Descriptionintracellular chloride channel activity
Cds size414
COG categoryU
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789332.4633546-CDS-P-littoralis_Contig10:501656..5017781680789332.4633546-CDS-P-littoralis_Contig10:501656..501778Pylaiella littoralis U1_48CDSP-littoralis_Contig10 501657..501778 -
1680789332.4820726-CDS-P-littoralis_Contig10:502555..5027601680789332.4820726-CDS-P-littoralis_Contig10:502555..502760Pylaiella littoralis U1_48CDSP-littoralis_Contig10 502556..502760 -
1680789332.4923513-CDS-P-littoralis_Contig10:503682..5037691680789332.4923513-CDS-P-littoralis_Contig10:503682..503769Pylaiella littoralis U1_48CDSP-littoralis_Contig10 503683..503769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.131.1prot_P-littoralis_Contig10.131.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 501657..503769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.131.1

>prot_P-littoralis_Contig10.131.1 ID=prot_P-littoralis_Contig10.131.1|Name=mRNA_P-littoralis_Contig10.131.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
EPVVGVACERSCMSLLATNLTIVFVVQLVVGNLTEVLIPYVKYTMRIKSE
KRADDEHGHEAERRANADKQEKGKGRGKKAKIQRTQAEKGLHLEQYDPIM
GTLMDYAELAVQFGYITLFVVSFPLAPLLALANNYVET
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mRNA from alignment at P-littoralis_Contig10:501655..503769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.131.1 ID=mRNA_P-littoralis_Contig10.131.1|Name=mRNA_P-littoralis_Contig10.131.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2115bp|location=Sequence derived from alignment at P-littoralis_Contig10:501655..503769- (Pylaiella littoralis U1_48)
GAGCCCGTGGTGGGCGTGGCCTGCGAGAGGAGCTGCATGAGCCTCCTGGC GACTAACCTTACCATCGTCTTCGTGGTGCAGCTGGTGGTGAGTTTGCTTC ATTCTCTTCCGGTATTAATCGACAAGTTCGTAGTGTTTCCATCTTTCATT TGTTATTTTTTCTCTGTCTCTTGGTATTTTGATCGAGCTCTACGTATGCC TTTTTTTTTCTCTCACCTCTTCCTGTGTTACTCACTCTCTCTCTCTCTGC CTCTCTCCCTCTCTTCTACTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCCAACTGTTGTTTCTACTGTACCGTGTATG AATAACATCTTGAAACCTACAGGAAATACTACTCTTGAGACGAGACCCGT TGGGGGGTATGATAAACCAGTATAATAATTGTATTCATCTGTCTAGACTC ACACACATTCATATCTTTATATATGCATACATTTAGATGAAGAGTATCGT ATTCTTTGTTCAAAATAATATCGTGTGGGCGGGCATGAGTATGAGCGGAG GTGGCTGCGTGACCTGCCTCCCGACCCACCACTGCTGTCAGCCGTGGTTT TGGAGACATCATAGCGTGCACAGCGCAGTATTAGTTTGTTCCCGTGTTTT TTTTTGTCGTTTTTCTGCAACAAAGATTAAGGTTGCTTCGTAGATCTTAA ACTCCAAGAAACGCTCAATCGTCGCTGCATCATCATCATCATCATCTCTT ATCCCCGGCTGGCTTACTGTTGACCCTCTTTTTTTTTATTTATATTTTTC ATAGTAGATGCTATCATACCGTACGTACATCACCTTGGCAGGACAAACTC GCTGGCGTATCCGCGTGCTCACTCTCACCGCCTACACCAATCAATGTACG CTCGCTTCCAGGTGCTCCAGGTGCCGTCCCGCTCTCATCTGACGTTTATT TTCGCTGAAGTAATACGTGTGTCTTGTGTTTGATTTCTGGTGTAACGTAC ACATGATAGGTTGGCAATCTGACGGAGGTGCTGATCCCGTATGTGAAGTA CACCATGCGAATCAAGTCCGAGAAGCGTGCGGACGACGAGCACGGACACG AAGCAGAGAGGAGAGCCAACGCCGACAAACAAGAAAAAGGGAAAGGCAGA GGCAAGAAAGCCAAAATCCAGAGGACGCAAGCCGAGAAAGGGCTGCACCT CGAGCAGTACGACCGTGAGTGCTATACAACACCACCCACTTCTGTGCTTG TATCTCCAGGGCCCCAACCCTAGCAACCCTAACCCTAACCCGAAGTTTTG AGTCTGGCCCTGCACATGCAATACCGTCGATACAACTGTCTACCAGGTAT TTGTTATTGGTAGGTTATATTCGTTGGTTTCATGTGCTTGTGTATCATCC CCGAATCAGAACAAACAGCGATCTAGTATCGTAGGTGGGCACACAAGATG AGTTACAATTCCGGGACCTCCTCAAGTGACTCGGTCAACATGAACGAAGC GACAACAAGCGCCTACCCTTTCTTCTCTCATCCCTCAAACACTTGAAAAA TTAGGTCAGGTATGTACCCTCACCACCATCCTGGCCCTGAGATGTCTCGG TCTGGAAAAAATATTGTGATTGAGTGTAGTTGCCCCCCCTTCTCCCCCTC CTCCTCCCCCCCCTCCCTCCCTCCCTCCTCCTTCCCCCCTCCCCCTCCCC CCCCCCCTAATGCCTCCCCGGGTCATAAGGTATCCCCCCGCTTCGCCCAT GCTGCTTGACCGAAGTCCTATGTCCCACCCAAACATTGGGGGGCAGACGG GACAGGGCGACACAGACGGACTATCGGACACCACGGCGTCTCGGTCCTCG TTTTTTGTTGTACCATACTAGTACGTTTTATCCTGCTGCCCGTCCCGTCA ATTCTTTTGATCTTGTCGCGTGTGATGGAACATTCCGGTACGTACGATAT GTATGTATGAATGTATGTGTGTCTTATGTGTGTGTGAACAGCGATCATGG GCACCCTCATGGACTACGCCGAGCTAGCCGTCCAGTTCGGCTACATCACT CTGTTCGTGGTTTCCTTTCCGCTGGCCCCCCTCCTCGCCCTGGCCAACAA CTACGTGGAGACCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:501655..503769-

>mRNA_P-littoralis_Contig10.131.1 ID=mRNA_P-littoralis_Contig10.131.1|Name=mRNA_P-littoralis_Contig10.131.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig10:501655..503769- (Pylaiella littoralis U1_48)
GAGCCCGTGGTGGGCGTGGCCTGCGAGAGGAGCTGCATGAGCCTCCTGGC
GACTAACCTTACCATCGTCTTCGTGGTGCAGCTGGTGGTTGGCAATCTGA
CGGAGGTGCTGATCCCGTATGTGAAGTACACCATGCGAATCAAGTCCGAG
AAGCGTGCGGACGACGAGCACGGACACGAAGCAGAGAGGAGAGCCAACGC
CGACAAACAAGAAAAAGGGAAAGGCAGAGGCAAGAAAGCCAAAATCCAGA
GGACGCAAGCCGAGAAAGGGCTGCACCTCGAGCAGTACGACCCGATCATG
GGCACCCTCATGGACTACGCCGAGCTAGCCGTCCAGTTCGGCTACATCAC
TCTGTTCGTGGTTTCCTTTCCGCTGGCCCCCCTCCTCGCCCTGGCCAACA
ACTACGTGGAGACC
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