mRNA_P-littoralis_Contig86.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.18.1
Unique NamemRNA_P-littoralis_Contig86.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig86.18.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.260e-27
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    4 VYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRLLQSL 345
            VYVYANDSDLIVLGVR+LL++    +   L+GV I +  IF+PPE AF  +   +AFLR LHGLP+ + P L A+PL +A AR RL L+A + GND+A F++IGP  A ++   L
Sbjct:  175 VYVYANDSDLIVLGVRSLLWDVRGTDAGNLTGVCIRSRLIFQPPEWAFAIDAEGYAFLRQLHGLPRGHTPNLRASPLTEAAARRRLSLFATLAGNDFADFKNIGPVRAAKVAFEL 289          
BLAST of mRNA_P-littoralis_Contig86.18.1 vs. uniprot
Match: D7G0K2_ECTSI (Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G0K2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.810e-26
Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 333
            NVYVYANDSDL VLGVR LL E  +  R +L G  +    +F+P   +F R+  AH +LR LHG+ +  D  L   PLP+ TAR RLLL+AI+VGND+AKF+++GP  A RL
Sbjct:  135 NVYVYANDSDLTVLGVRDLLVEVVKNARGELVGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTARRRLLLFAIIVGNDFAKFKNVGPVTAARL 246          
BLAST of mRNA_P-littoralis_Contig86.18.1 vs. uniprot
Match: A0A6H5KVY6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.180e-25
Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 333
            NVYVYANDSDL VLGVR LL E  +  R +L G  +    +F+P   +F R+  AH +LR LHG+    D  L   PLP+ TAR RL+L+A++VGND+AKF+++GP  A RL
Sbjct:  380 NVYVYANDSDLTVLGVRDLLVEVVKNTRGELIGRCVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHTPVDEGLDYTPLPEPTARRRLVLFAMIVGNDFAKFKNVGPVTAARL 491          
BLAST of mRNA_P-littoralis_Contig86.18.1 vs. uniprot
Match: D7G4G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G5_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.220e-25
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 333
            NVYVYANDSDL VLGVR  L E  +  R +L G  +    +F+P   +F R+  AH +LR LHG+ +  D  L   PLP+ T R RLLL+A++VGND+AKF+++GP  A RL
Sbjct:  108 NVYVYANDSDLTVLGVRDRLVEVVKNARGELVGRSVRQRLLFQPTAWSFLRSGDAHGWLRQLHGIHQPVDEGLDYTPLPEPTGRRRLLLFAVIVGNDFAKFKNVGPVTAARL 219          
BLAST of mRNA_P-littoralis_Contig86.18.1 vs. uniprot
Match: D7FZU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU5_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.570e-21
Identity = 53/112 (47.32%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 NVYVYANDSDLIVLGVRALLYEASERNR-QLSGVYINTDFIFKPPEMAFRRNTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKFEHIGPAAAGRL 333
            NVYVYANDSD  VLGV  LL E  +  R +L G  +    +F+P   +F R+      LR LHG+ +  D      PLP+ TAR RLLL+AI+VG D+AKF+++GP  A RL
Sbjct:  108 NVYVYANDSDFTVLGVLDLLVEVVKNARGELVGRCVRQRLLFQPTTWSFLRSGDVRGRLRQLHGIHQPVDEGFDYTPLPEPTARRRLLLFAIIVGKDFAKFKNVGPVTAARL 219          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE5.260e-2752.17Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G0K2_ECTSI1.810e-2652.68Exonuclease 1 n=3 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A6H5KVY6_9PHAE1.180e-2550.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G4G5_ECTSI4.220e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZU5_ECTSI1.570e-2147.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:51154..51504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.97e-27
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size351
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791730.0093303-CDS-P-littoralis_Contig86:51153..515041680791730.0093303-CDS-P-littoralis_Contig86:51153..51504Pylaiella littoralis U1_48CDSP-littoralis_Contig86 51154..51504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.18.1prot_P-littoralis_Contig86.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 51154..51504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.18.1

>prot_P-littoralis_Contig86.18.1 ID=prot_P-littoralis_Contig86.18.1|Name=mRNA_P-littoralis_Contig86.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
NVYVYANDSDLIVLGVRALLYEASERNRQLSGVYINTDFIFKPPEMAFRR
NTTAHAFLRLLHGLPKEYDPALVANPLPDATARDRLLLYAIVVGNDYAKF
EHIGPAAAGRLLQSLPP
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mRNA from alignment at P-littoralis_Contig86:51154..51504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.18.1 ID=mRNA_P-littoralis_Contig86.18.1|Name=mRNA_P-littoralis_Contig86.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig86:51154..51504- (Pylaiella littoralis U1_48)
AACGTGTATGTTTACGCGAACGACTCTGATCTCATCGTCTTGGGCGTAAG GGCGTTGCTATATGAAGCGTCCGAGCGCAACCGCCAGCTGAGCGGAGTGT ACATCAACACTGACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGA AACACTACAGCTCATGCGTTCCTTCGCCTGCTGCACGGCCTGCCTAAAGA GTACGACCCGGCATTGGTAGCCAACCCTCTGCCCGACGCGACTGCTCGAG ATCGCCTACTTCTTTATGCCATTGTCGTGGGTAACGACTACGCAAAATTC GAGCACATTGGGCCGGCTGCGGCGGGGAGATTACTACAGTCCCTGCCTCC G
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:51154..51504-

>mRNA_P-littoralis_Contig86.18.1 ID=mRNA_P-littoralis_Contig86.18.1|Name=mRNA_P-littoralis_Contig86.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig86:51154..51504- (Pylaiella littoralis U1_48)
AACGTGTATGTTTACGCGAACGACTCTGATCTCATCGTCTTGGGCGTAAG
GGCGTTGCTATATGAAGCGTCCGAGCGCAACCGCCAGCTGAGCGGAGTGT
ACATCAACACTGACTTCATTTTCAAACCTCCAGAGATGGCATTCAGAAGA
AACACTACAGCTCATGCGTTCCTTCGCCTGCTGCACGGCCTGCCTAAAGA
GTACGACCCGGCATTGGTAGCCAACCCTCTGCCCGACGCGACTGCTCGAG
ATCGCCTACTTCTTTATGCCATTGTCGTGGGTAACGACTACGCAAAATTC
GAGCACATTGGGCCGGCTGCGGCGGGGAGATTACTACAGTCCCTGCCTCC
G
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