mRNA_P-littoralis_Contig86.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.17.1
Unique NamemRNA_P-littoralis_Contig86.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:46591..47135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size545
Hectar predicted targeting categoryother localisation
Exons1
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791729.9522812-UTR-P-littoralis_Contig86:46590..466251680791729.9522812-UTR-P-littoralis_Contig86:46590..46625Pylaiella littoralis U1_48UTRP-littoralis_Contig86 46591..46625 +
1680791729.9742167-UTR-P-littoralis_Contig86:46841..471351680791729.9742167-UTR-P-littoralis_Contig86:46841..47135Pylaiella littoralis U1_48UTRP-littoralis_Contig86 46842..47135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791729.9626431-CDS-P-littoralis_Contig86:46625..468411680791729.9626431-CDS-P-littoralis_Contig86:46625..46841Pylaiella littoralis U1_48CDSP-littoralis_Contig86 46626..46841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.17.1prot_P-littoralis_Contig86.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 46626..46841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.17.1

>prot_P-littoralis_Contig86.17.1 ID=prot_P-littoralis_Contig86.17.1|Name=mRNA_P-littoralis_Contig86.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
MVLKISELETELGEIKDSLGGKADKAHPAAPGIARIDHSILIGKDSTQVR
SLVGVSSHYSLEVRFMPLLYK*
back to top

mRNA from alignment at P-littoralis_Contig86:46591..47135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.17.1 ID=mRNA_P-littoralis_Contig86.17.1|Name=mRNA_P-littoralis_Contig86.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=545bp|location=Sequence derived from alignment at P-littoralis_Contig86:46591..47135+ (Pylaiella littoralis U1_48)
CCGAGCGGCTGCACCTCCAACACAAAATCCAGCTAATGGTGCTCAAAATC
TCGGAGCTGGAGACGGAGTTGGGCGAGATCAAGGATAGTTTGGGGGGTAA
GGCAGACAAAGCGCATCCCGCAGCACCTGGTATCGCGAGGATCGATCACT
CCATCCTTATCGGCAAGGATTCAACACAAGTTCGTAGTCTTGTGGGAGTG
AGCTCCCACTACTCTCTGGAGGTGAGGTTCATGCCACTGCTGTACAAGTA
GCTGCAGCAGGAGCGTCGAACTGCGATGGTAGGCATGCACAGCTCAGAGA
ACAGGAGAAGTCCTTACCTCAACCAAAATGGGGCTTGTTCGCCCTTGTTC
GCCCTTGATTCGTGCTGCCGGTAACATTTCAGGAAAGTCACATTCATAAA
CTCGCCCCATTTTTGAAGTAAGACATCGCGTGAACATCCTCCCTCGTGTA
TAAAGGGAACGTGTACAATCGTGTTTGAAAGGGTAAGATAATGGGGAAAG
GCTTGGCTCTCACTAGTGTAGAGTGCCTCGCATGACACATGAATA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig86:46591..47135+

>mRNA_P-littoralis_Contig86.17.1 ID=mRNA_P-littoralis_Contig86.17.1|Name=mRNA_P-littoralis_Contig86.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig86:46591..47135+ (Pylaiella littoralis U1_48)
ATGGTGCTCAAAATCTCGGAGCTGGAGACGGAGTTGGGCGAGATCAAGGA
TAGTTTGGGGGGTAAGGCAGACAAAGCGCATCCCGCAGCACCTGGTATCG
CGAGGATCGATCACTCCATCCTTATCGGCAAGGATTCAACACAAGTTCGT
AGTCTTGTGGGAGTGAGCTCCCACTACTCTCTGGAGGTGAGGTTCATGCC
ACTGCTGTACAAGTAG
back to top