mRNA_P-littoralis_Contig86.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 410 bits (1054), Expect = 6.730e-138 Identity = 212/354 (59.89%), Postives = 255/354 (72.03%), Query Frame = 1
Query: 133 RQRKDGSTCAWAQLLREEELLKDRTNIEAKKFREGFRIPYRFFLRLVEVVKSKDWFATAQHDASGRQGHPVEHKVMACLTILARGNCLGSIYMLSWMSSAVVQTTFHKFCKHFATEMYDEHIFLPTDENGELDRVMG*YEKLGFPGAVGSTDVTHIAWGRCPYKQARSYTGKEGKPTIEYQVTVNHAGRVLTVTEGFTGSTNDKTIICWDAAVDRISHRQAVHGKDI*RLQQGWHHANPEG--LLLDRQQRLPQVADADRALQVPAERRRLALLEEAGERKEGCGVLLRHSEGSLQNPQARDDLPGAGAH*LRVLHVLHPAQHAAYLRRHGRPGGERQLGQQCRAPEHVGAQRG 1188
RQRK CAWA++L +++L ++ + +K+FR FR+P FFLRLV +VKSK+WFATA DA+GRQ HPVEHKV+A LTIL RGNC SIY +SWMS+A VQ FH FCKHFA EMYDEHI+LP+++NGELD VM Y++LGF GA+GS DVTHI W +CPY RSYTGKEG PTI YQVTVNHAGR VTEGFTGSTNDKTI+CWDAAV++I + K + +G LL+D Q+ A QVPAER R L EEAGER EG G+LLRH E LQ+P+AR +P AGAH RVLHVLH AQHAA+LRR+GR GG+ +GQQCR +HVG + G
Sbjct: 53 RQRKYVERCAWARMLEDKDL-EESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMG--AHQVPAERERSPLFEEAGERAEGRGMLLRHPERPLQDPEARHGVPRAGAHRQRVLHVLHLAQHAAHLRRNGRAGGKHAMGQQCRGGDHVGDRAG 403
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 356 bits (914), Expect = 4.680e-116 Identity = 168/212 (79.25%), Postives = 183/212 (86.32%), Query Frame = 1
Query: 145 DGSTCAWAQLLREEELLKDRTNIEAKKFREGFRIPYRFFLRLVEVVKSKDWFATAQHDASGRQGHPVEHKVMACLTILARGNCLGSIYMLSWMSSAVVQTTFHKFCKHFATEMYDEHIFLPTDENGELDRVMG*YEKLGFPGAVGSTDVTHIAWGRCPYKQARSYTGKEGKPTIEYQVTVNHAGRVLTVTEGFTGSTNDKTIICWDAAVDRI 780
D STCAWAQ+L +E+L KD T+I AKKFRE FR+PY FFLRLVE+VK KDWFAT Q DA GR+ HPVEHKV+ACLTIL RGN GSIY LSWMS+ VQ FH+FC+HFATEMYDEHIFLP++ENGELDRVMG YEKLGFPGA+GSTDVTHI W RCPY Q RSYTGKEGKPT+ YQVTVNHAGRVL VTEGFTGSTNDKTIIC D AVDRI
Sbjct: 59 DTSTCAWAQVLEDEDL-KDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRI 269
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 315 bits (807), Expect = 7.720e-101 Identity = 144/218 (66.06%), Postives = 175/218 (80.28%), Query Frame = 1
Query: 127 DDRQRKDGSTCAWAQLLREEELLKDRTNIEAKKFREGFRIPYRFFLRLVEVVKSKDWFATAQHDASGRQGHPVEHKVMACLTILARGNCLGSIYMLSWMSSAVVQTTFHKFCKHFATEMYDEHIFLPTDENGELDRVMG*YEKLGFPGAVGSTDVTHIAWGRCPYKQARSYTGKEGKPTIEYQVTVNHAGRVLTVTEGFTGSTNDKTIICWDAAVDRI 780
D+R+RK+ CAWAQ+L +++L +D +I +K+FR FR+P FFLRLV +VKSKDWF T+ DA+ RQ HPVEHKV+A LTIL RGNC SIY +SWMS+ VQT FHKFCKHFA EMYDEHI+LP+++NGELD VM Y++LGF GA+GS DVTHI W +CPY ARSYTGKEG PT+ YQVTVNHAGR + VTEGFT STNDKT +CWDA V++I
Sbjct: 24 DERKRKEVEKCAWAQMLEDKDL-EDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKI 240
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE) HSP 1 Score: 309 bits (791), Expect = 1.540e-97 Identity = 174/353 (49.29%), Postives = 214/353 (60.62%), Query Frame = 1
Query: 133 RQRKDGSTCAWAQLLREEELLKDRTNIEAKKFREGFRIPYRFFLRLVEVVKSKDWFATAQHDASGRQGHPVEHKVMACLTILARGNCLGSIYMLSWMSSAVVQTTFHKFCKHFATEMYDEHIFLPTDENGELDRVMG*YEKLGFPGAVGSTDVTHIAWGRCPYKQARSYTGKEGKPTIEYQVTVNHAGRVLTVTEGFTGSTNDKTIICWDAAVDRISHRQAVHGKDI*RLQQGWHHANPEG--LLLDR---------QQRLPQVADA-------------DRALQVPAERRRLALLEEAGERKEGCGVLLRHSEGSLQNPQARDDLPGAGAH*LRVLHVLHPAQHAAYLRRHG 1119
R+RKD CAWAQ+L +++L D +I +K+FR FR+PY FFLRL +VKSKDWF T+ DA+GRQ HPVEHKV+A LTIL RGNC SIY +SWMS+ N ELD VM Y++LGF G++GS DVTHI W +CPY ARSYTGKEG P I YQV V+HAGR + VTEGFT STNDKTI+CWDAAV++I + K + +G LL+D + + P + + D QVPAER R +L E AGER +G GVLLRH EGSLQ+P+AR +P GAH RV LH AQHAA+LRR+G
Sbjct: 89 RKRKDVEKCAWAQMLEDKDL-DDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKT---------------------------NDELDHVMEQYDRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVPAIGYQVMVSHAGRAIAVTEGFTCSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKLVNSVESKRPSLGPSPFPLSFFFPVEYPDGTHQVPAERERHSLFEGAGERAQGRGVLLRHPEGSLQDPEARHGVPRVGAHRQRVFRELHLAQHAAHLRRNG 413
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 299 bits (765), Expect = 6.880e-94 Identity = 140/204 (68.63%), Postives = 164/204 (80.39%), Query Frame = 1
Query: 169 QLLREEELLKDRTNIEAKKFREGFRIPYRFFLRLVEVVKSKDWFATAQHDASGRQGHPVEHKVMACLTILARGNCLGSIYMLSWMSSAVVQTTFHKFCKHFATEMYDEHIFLPTDENGELDRVMG*YEKLGFPGAVGSTDVTHIAWGRCPYKQARSYTGKEGKPTIEYQVTVNHAGRVLTVTEGFTGSTNDKTIICWDAAVDRI 780
+LL E++ L+D T+I AK+ R FR+PY FLRLV +VKSK+WF+TA DA G HPVEHKV+A LTIL RGNC SIY +SWMS+ VQ FHKFC+HFA EMYDE I LPT+E+G+LD VM Y++LGF GAVGS DVTHIAW RCPY QARSYTGKEG PTI YQVTV+HAGR + VTEGFTGSTNDKTI+CWD AV++I
Sbjct: 24 ELLLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKI 227
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 285 bits (730), Expect = 4.070e-90 Identity = 139/184 (75.54%), Postives = 152/184 (82.61%), Query Frame = 2
Query: 779 FRTDKQYTEKTFDVYNKDGTTPTLKGCYLIVNNGYHKWRTLIEPSKYPLSVGDLLFSKRLESARKDVECFFGILKVRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQSTW--EHNVDSTSVGTKDVNEKPQIEAGHALLKRQLTTSCLYRKQIKRDIVWLSR 1324
RTDKQYTEKTFD+YN+DGTT TLKGCY + +NGYHKW+ LIEPSKYPLS DLLFSKRLES RKDVECFFGILK RFRILKLAM YQ QERID VFFTCCILHNMLHTFDGMD L EN NWVSSA + +T E D S GTKDVN++PQ+E GH + KRQLTTS YRK+ K+DIVWLSR
Sbjct: 145 IRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGTKDVNDQPQLEIGHTVRKRQLTTSFAYRKKHKKDIVWLSR 328
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 282 bits (722), Expect = 1.960e-89 Identity = 143/201 (71.14%), Postives = 160/201 (79.60%), Query Frame = 2
Query: 719 GSQGPPTTRRSSAGMQRWTGFRTDKQYTEKTFDVYNKDGTTPTLKGCYLIVNNGYHKWRTLIEPSKYPLSVGDLLFSKRLESARKDVECFFGILKVRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQST--WEHNVDSTSVGTKDVNEKPQIEAGHALLKRQLTTSCLYRKQIKRDIVW 1315
GS TT A +++ RTDKQYTEKTFDVYN+DGTT TLKGCY++V+NGYHKW+ LIEPSKYPLS DLLFSKRLES RKDVECFFGILK R RIL LAM +Q QERID VFFTCCILHNMLHTFDGMD L EN NWVSSA + +T E DS SVGTKDVN +PQ+EAGHA+ KRQLTTS YRK+ K+DIV+
Sbjct: 83 GSTNDKTTVCWDAAVEK---IRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVGTKDVNGRPQVEAGHAVRKRQLTTSFAYRKKHKKDIVY 280
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE) HSP 1 Score: 276 bits (707), Expect = 6.980e-88 Identity = 127/189 (67.20%), Postives = 151/189 (79.89%), Query Frame = 1
Query: 133 RQRKDGSTCAWAQLLREEELLKDRTNIEAKKFREGFRIPYRFFLRLVEVVKSKDWFATAQHDASGRQGHPVEHKVMACLTILARGNCLGSIYMLSWMSSAVVQTTFHKFCKHFATEMYDEHIFLPTDENGELDRVMG*YEKLGFPGAVGSTDVTHIAWGRCPYKQARSYTGKEGKPTIEYQVTVNHAGR 699
RQRKD TCAWAQ+L +++L +D + +K+FR FR+PY FFLRLV +VKSK+WF TA D +GR HPVEHKV+A LTIL RGNC SIY +SWMS+A VQ FHKFCKHFA EMYDEHI+LP+++NGELD VM Y++LGF GA+GS DVTHI W +CPY ARSYTGKEG PT+ YQVTVNHAGR
Sbjct: 53 RQRKDVKTCAWAQMLEDKDL-EDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGR 240
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 265 bits (678), Expect = 3.530e-80 Identity = 128/216 (59.26%), Postives = 161/216 (74.54%), Query Frame = 1
Query: 139 RKDGSTCAWAQLLRE--EELLKDRTNIEAKKFREGFRIPYRFFLRLVEVVKSKDWFATAQHDASGRQGHPVEHKVMACLTILARGNCLGSIYMLSWMSSAVVQTTFHKFCKHFATEMYDEHIFLPTDENGELDRVMG*YEKLGFPGAVGSTDVTHIAWGRCPYKQARSYTGKEGKPTIEYQVTVNHAGRVLTVTEGFTGSTNDKTIICWDAAVDRI 780
RKD + W Q L E E D T EA++FR FR+PY FF+ LVE+V+ +DWF T + D +GRQ PVE KV+ACL IL+RGN IY +S++S V +TFH+FCK+FA E+YDE+++LPT E +L +VM Y+++GFPGAVGSTDVTHI WG CPY QAR YTGKEGKPT+ +QVTV+H+GRVL VT GFTG+TNDKTII +D AV RI
Sbjct: 101 RKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGE--DLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRI 314
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE) HSP 1 Score: 256 bits (653), Expect = 6.590e-77 Identity = 134/208 (64.42%), Postives = 152/208 (73.08%), Query Frame = 2
Query: 719 GSQGPPTTRRSSAGMQRWTG----FRTDKQYTEKTFDVYNKDGTTPTLKGCYLIVNNGYHKWRTLIEPSKYPLSVGDLLFSKRLESARKDVECFFGILKVRFRILKLAMTYQEQERIDYVFFTCCILHNMLHTFDGMDDLEENVNWVSSAELQSTW--EHNVDSTSVGTKDVNEKPQIEAGHALLKRQLTTSCLYRKQIKRDIVWLSR 1324
G +G PT + W RTDKQYTEKTFDVYN+DGTT TLKG YL+V+NGYHKW+ LIEPSKYPLS DLLFSKRL+S R+D GILK RFRILKLAM YQ QERID VFFTCCI+HNMLHTFDGMD L EN VSSA + +T E D SVG +DVN++PQ+E G + KRQLTTS YRK+ K+DIVWLSR
Sbjct: 252 GKEGFPTIAYQVVTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMDQLVENTIRVSSAGVGATLATELEADCGSVGRRDVNDQPQLEIGRTVRKRQLTTSFAYRKKHKKDIVWLSR 459 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig86.2.1 >prot_P-littoralis_Contig86.2.1 ID=prot_P-littoralis_Contig86.2.1|Name=mRNA_P-littoralis_Contig86.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=189bp MQRWTGFRTDKQYTEKTFDVYNKDGTTPTLKGCYLIVNNGYHKWRTLIEPback to top mRNA from alignment at P-littoralis_Contig86:741..4243- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig86.2.1 ID=mRNA_P-littoralis_Contig86.2.1|Name=mRNA_P-littoralis_Contig86.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3503bp|location=Sequence derived from alignment at P-littoralis_Contig86:741..4243- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig86:741..4243- >mRNA_P-littoralis_Contig86.2.1 ID=mRNA_P-littoralis_Contig86.2.1|Name=mRNA_P-littoralis_Contig86.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig86:741..4243- (Pylaiella littoralis U1_48)back to top |