mRNA_P-littoralis_Contig86.179.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.179.1
Unique NamemRNA_P-littoralis_Contig86.179.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig86.179.1 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.380e-5
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:    2 WNKATKTSEKDGC-GHWLLNVSGDFQSACDVCVIKIPL 112
            WNKAT+T E+DG  G W  NV+  F+SACDVCVI++PL
Sbjct:  496 WNKATETCEEDGGRGDWRRNVTDGFKSACDVCVIEMPL 533
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFB9_9PHAE2.380e-563.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:602919..603470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size552
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791729.3235688-UTR-P-littoralis_Contig86:602918..6029241680791729.3235688-UTR-P-littoralis_Contig86:602918..602924Pylaiella littoralis U1_48UTRP-littoralis_Contig86 602919..602924 -
1680791729.3473094-UTR-P-littoralis_Contig86:603278..6034701680791729.3473094-UTR-P-littoralis_Contig86:603278..603470Pylaiella littoralis U1_48UTRP-littoralis_Contig86 603279..603470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791729.3341794-CDS-P-littoralis_Contig86:602924..6032781680791729.3341794-CDS-P-littoralis_Contig86:602924..603278Pylaiella littoralis U1_48CDSP-littoralis_Contig86 602925..603278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.179.1prot_P-littoralis_Contig86.179.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 602925..603278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.179.1

>prot_P-littoralis_Contig86.179.1 ID=prot_P-littoralis_Contig86.179.1|Name=mRNA_P-littoralis_Contig86.179.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MGNVTRLVMTHGHPLIRTYRRVSSREISGPSTCADSRVDQLVDQGHGFAP
RGVIKSRPEVSRGCFQSLPTGCWFTVNVTNSFNIVFSRGFCELYGTGRRI
FPKGVPVFSPSFLGVDR*
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mRNA from alignment at P-littoralis_Contig86:602919..603470-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.179.1 ID=mRNA_P-littoralis_Contig86.179.1|Name=mRNA_P-littoralis_Contig86.179.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig86:602919..603470- (Pylaiella littoralis U1_48)
ATGGAACAAGGCCACCAAGACTAGCGAAAAGGATGGTTGCGGTCATTGGC
TGCTCAACGTAAGTGGCGATTTTCAATCGGCGTGTGATGTATGCGTAATT
AAGATCCCATTGTAATTGAACTGGTTTTTCTGACGTCGCAGCCTCTTCTG
CTGGAAAAGTAGAGTTGTGGAGAGGTTTCTAAACGGCTAGCGATGGGAAA
TGTTACACGGCTCGTAATGACACACGGACACCCACTCATCCGAACGTACC
GTCGAGTTTCATCAAGAGAGATTTCTGGCCCGTCGACTTGTGCGGATTCA
AGAGTAGATCAACTGGTTGATCAAGGCCACGGATTCGCACCACGTGGCGT
AATCAAATCGAGGCCTGAAGTTTCTCGAGGTTGTTTTCAGTCACTTCCTA
CAGGCTGCTGGTTCACGGTGAACGTAACAAATTCCTTCAACATCGTTTTC
TCACGCGGTTTTTGCGAGTTGTATGGTACAGGCAGAAGAATTTTTCCAAA
GGGGGTACCGGTTTTTTCTCCGTCATTTTTGGGAGTTGACAGGTGAAACA
AA
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:602919..603470-

>mRNA_P-littoralis_Contig86.179.1 ID=mRNA_P-littoralis_Contig86.179.1|Name=mRNA_P-littoralis_Contig86.179.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig86:602919..603470- (Pylaiella littoralis U1_48)
ATGGGAAATGTTACACGGCTCGTAATGACACACGGACACCCACTCATCCG
AACGTACCGTCGAGTTTCATCAAGAGAGATTTCTGGCCCGTCGACTTGTG
CGGATTCAAGAGTAGATCAACTGGTTGATCAAGGCCACGGATTCGCACCA
CGTGGCGTAATCAAATCGAGGCCTGAAGTTTCTCGAGGTTGTTTTCAGTC
ACTTCCTACAGGCTGCTGGTTCACGGTGAACGTAACAAATTCCTTCAACA
TCGTTTTCTCACGCGGTTTTTGCGAGTTGTATGGTACAGGCAGAAGAATT
TTTCCAAAGGGGGTACCGGTTTTTTCTCCGTCATTTTTGGGAGTTGACAG
GTGA
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