mRNA_P-littoralis_Contig86.153.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig86.153.1
Unique NamemRNA_P-littoralis_Contig86.153.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig86.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig86contigP-littoralis_Contig86:549418..551959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categorysignal peptide
Exons2
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791729.072653-CDS-P-littoralis_Contig86:549417..5495851680791729.072653-CDS-P-littoralis_Contig86:549417..549585Pylaiella littoralis U1_48CDSP-littoralis_Contig86 549418..549585 +
1680791729.0845916-CDS-P-littoralis_Contig86:551815..5519591680791729.0845916-CDS-P-littoralis_Contig86:551815..551959Pylaiella littoralis U1_48CDSP-littoralis_Contig86 551816..551959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig86.153.1prot_P-littoralis_Contig86.153.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig86 549418..551959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig86.153.1

>prot_P-littoralis_Contig86.153.1 ID=prot_P-littoralis_Contig86.153.1|Name=mRNA_P-littoralis_Contig86.153.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
LEIAPYSPLAVVMKILVRRTAVGVFVGVNQVLLLVLVSFLWHHRRAAHQT
AYIKNKVGLPQELFRRPLQQQHDNPVSTDCLQGDLLVDTEDREGRFWCGE
TSAG
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mRNA from alignment at P-littoralis_Contig86:549418..551959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig86.153.1 ID=mRNA_P-littoralis_Contig86.153.1|Name=mRNA_P-littoralis_Contig86.153.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2542bp|location=Sequence derived from alignment at P-littoralis_Contig86:549418..551959+ (Pylaiella littoralis U1_48)
CTTGAAATAGCCCCGTACTCTCCCTTGGCTGTAGTTATGAAGATTCTGGT
ACGTCGAACCGCCGTTGGGGTGTTTGTTGGTGTGAATCAAGTTCTTCTAC
TCGTCCTGGTGAGTTTCTTGTGGCATCATCGGCGAGCTGCTCACCAAACA
GCCTATATAAAGAATAAGGTGAGAGGTATTGTGCTGTTCTGCAGGGGCAA
CGGATGGATAACTCTCCTAATTTCCCAACTTTTTGAGTCAAACAGCAATT
TACTCCCATTCTGCATGCAACAGCGTTGTAGTGCCTCAAATGCACGCTAC
TTGAGAGGCCCTGATATTATTATGAACGCACCCGTAATTTTGTTGAGTAG
ATATTCACGTTCTGTGCTCCCGCGATGTCGAAATTAATAAATTGCGCATT
CATGTACTGCAGTGCAGTATTGGAGATCGAGCCCAAAAACGTTCTCATAC
GATCTTTTTGGATCGAGGGAAAAAAAACGCGATACTCGATCTTTTTTCGA
TACTGGAGAAAACGTCCGATACCGATACCGATCCCCGGATCGATCCCAAT
TTCAGTCGCGATCCAGTCGATCTCGATGTCGATACGGCCAATCTCAATGT
CCATACGGCCGTATCGAGAGATCGACATCGGTTTTGAAGGGGGGACGAGG
GAAATAACGGGGGGGGGGTGGATAAAGGGGGTTCCGTGTACGAAAAAGAG
TATCGGAGTATCGCGTTCAAAATTCCCGATGATTCGGCCGGATCGGATAT
ATCGATACCGCGATCCTTTTTCAAATTCAATCTCGATCTCCATCACTGAT
GTACTGTCTTCGTACTGTTTACAGGAGGTCTTTATGTGCATACCAGGTAC
AACACAGACAGGTGTCTGTCTAACTCCTCCTCCTCCCCTCCCCCTAACAT
TTCGGCTGAAGAACAAAAGGCATACCGGGAACGTACATGTATATCACTCC
GGCAAGGGGCCGTGTCAAGTACAAACCTTGAACATCGTCACACGCTACGT
AACAGTTCTCTGTCGATGGTGTGGGACTGGTTTGATACGAGCTGCGTAAA
ACGCTTGCGTCGGAAGGTTCGGAGCCAAACAAGTTTTTCGAAATTGTTTC
CTTAGAGGAGACCCTCTGGATCGCCACTTGACTGATTTCCAAAATGGCTC
GTGTACGCGACGACGGGGAGGTCTCCTGGCTTACGTAGCCCATCGTGTGC
CCAACTCACTTCCCACCCGCGTGCAGTCAGTAATCCACATGGGACATCGC
CGAAATTGAACTTGCCTTTACTAGCATACGGGATACCACCATAATTGGGA
ATTCTGCTGGTGTAGAGCCACGAATCACGCATCATTGCCTTCTCCAAGTA
CAAGAGAGAGAGACCGAACTGTTTTCCCTCTCCAACGGCGGAGAAGCTAC
ATGATGCGGCCAAGTATCGATGCTGTACTCCAAGGCTTCGAAAGAGAGCC
GTTAACGAGTACGCTGCGTTTGTCGTCGGGGTAAAGGTGATGATTCCATT
GGCCAAGGCAGATACGAGGGTATGCTCATTATCGTGTATAAATAATCGGC
CGTAGTCTCGATGGTTAGAATCGCTTGTGAGGCGAACTTCGGTACATCGT
GCGTACTTTCTCGCCCATGGGTGGTAGCTTTCGATGTCTCGGTCTGTATT
CCGGTGTGAACACCCCCAGAGACAGACATGCGTCGTTACCATGTACGCAG
CTGAGATGGATGCAGGCCTCGTGGCTGACTGACCGTCCACACACCGCGTG
ATGCGATCACTCTCCTTTCGCGGAGTGGGGGTTCTCCACCCCGCACAACA
TGGCAAAACTCGGAAGCCGCGCATTCCCACCTCCTTCCTCATTATCATGC
AAAAAGGCGGTGGACTTGACTACCTTTCTCACTCATTCTATAACGGCCGG
GTGTGAATGCAAGACGTGGCGTCTCACAGCACCGCGCCAAAAGTCTGCCA
GCCACAGAATAATTCAGATGGGGGGGGGGGCGGGGGGTTCCGACATGATT
TGGAGACACGATTTAGAGACACTTGTTGGCCCAAACATTTGATTCGGAGA
GAGAGCGACTAGACAAGAAGCAGATGATATCAAGGTTTCATCGAGAGTAA
TTTGACTCCATACGGACTATACACAAATGTAATATGAAACGATTTTCATA
ACTTTTGCCTCTCCATCCAACAACCTGAGCATGGGAACGTCGCCTTCGTC
TTGTAGCCCGTACATCTTTCTGGCTGTACGACTCATCTATCTGTTCACTC
TGCCTTCTGCTGTCTCATATCTATTCGTATCACTTTTCACGAATCTTTCT
TTTTGTTTCCCTGTCCTTTCTTTTTGTCGCTCTCCGTTCGTCCCCTTCTC
CGCTTCGGTTCCCACACACCGTAACGGTGATGGAAACGACGGTTACAGGT
CGGATTACCCCAGGAGTTGTTTCGACGGCCGCTCCAACAACAGCATGACA
ATCCTGTCTCCACCGACTGCCTCCAGGGAGACTTATTAGTTGACACCGAG
GACAGAGAAGGGCGCTTTTGGTGTGGAGAGACGAGTGCTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig86:549418..551959+

>mRNA_P-littoralis_Contig86.153.1 ID=mRNA_P-littoralis_Contig86.153.1|Name=mRNA_P-littoralis_Contig86.153.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig86:549418..551959+ (Pylaiella littoralis U1_48)
CTTGAAATAGCCCCGTACTCTCCCTTGGCTGTAGTTATGAAGATTCTGGT
ACGTCGAACCGCCGTTGGGGTGTTTGTTGGTGTGAATCAAGTTCTTCTAC
TCGTCCTGGTGAGTTTCTTGTGGCATCATCGGCGAGCTGCTCACCAAACA
GCCTATATAAAGAATAAGGTCGGATTACCCCAGGAGTTGTTTCGACGGCC
GCTCCAACAACAGCATGACAATCCTGTCTCCACCGACTGCCTCCAGGGAG
ACTTATTAGTTGACACCGAGGACAGAGAAGGGCGCTTTTGGTGTGGAGAG
ACGAGTGCTGGG
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