mRNA_P-littoralis_Contig851.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig851.14.1
Unique NamemRNA_P-littoralis_Contig851.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig851.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig851contigP-littoralis_Contig851:104100..105541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size304
Hectar predicted targeting categorysignal peptide
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791721.5559862-CDS-P-littoralis_Contig851:104099..1041971680791721.5559862-CDS-P-littoralis_Contig851:104099..104197Pylaiella littoralis U1_48CDSP-littoralis_Contig851 104100..104197 -
1680791721.5668964-CDS-P-littoralis_Contig851:105335..1054801680791721.5668964-CDS-P-littoralis_Contig851:105335..105480Pylaiella littoralis U1_48CDSP-littoralis_Contig851 105336..105480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791721.5774171-UTR-P-littoralis_Contig851:105480..1055411680791721.5774171-UTR-P-littoralis_Contig851:105480..105541Pylaiella littoralis U1_48UTRP-littoralis_Contig851 105481..105541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig851.14.1prot_P-littoralis_Contig851.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig851 104100..105480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig851.14.1

>prot_P-littoralis_Contig851.14.1 ID=prot_P-littoralis_Contig851.14.1|Name=mRNA_P-littoralis_Contig851.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
MKRHFYVLLTACSFTPFRRAAVLQTYFSPLSSCGPSLEFFSEQDHFHFLS
NSADFLSFTTCHCTGWTRVPYPVCLRAARG*
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mRNA from alignment at P-littoralis_Contig851:104100..105541-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig851.14.1 ID=mRNA_P-littoralis_Contig851.14.1|Name=mRNA_P-littoralis_Contig851.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1442bp|location=Sequence derived from alignment at P-littoralis_Contig851:104100..105541- (Pylaiella littoralis U1_48)
GAAAAAAGGTGTAGAACTAACTGCATAGCACCAAGTGCAGGATGTGCAGA
CGTTTTTTGTTATGAAACGGCATTTCTACGTTTTACTTACAGCTTGCAGT
TTCACGCCATTTCGCAGGGCGGCCGTTTTGCAGACCTACTTTTCACCACT
TTCGAGTTGCGGACCTTCTCTTGAATTTTTTTCCGAGCAAGACCATTTTC
ATTTTCCTCTAAACAGAGAGTTTGCGCAAAAGGATTTATTATCTCAAATA
TCCTTCCTTGGAAAAAACAAACAAAAAGCGTGGTGAATAAGAATTCCTTT
TGAATTAAATTTAAAAAAGAGTTTGCGGAAAAGGAATTCCCTTCTGACAG
AACACCCACACTCTCGTATGGTAGTGCAGGGCAACAATCAGACACACACG
CCCACACACACGGCTGATGATGTGCTGCTGCTGTAGGATAGCCAAGACAA
CGAGTCTTTGGTTCAAGTAGTGGGGAAGGGTGCTGGGTCAAGCAAGTAAA
TGCAAACTCAGGGGTCACGGGCAGCAGGGATGGGGCAAGTTCGGCAGAGA
GGCTGTAGTTGTGCAAGAAGGTATCATTGATTGGTGTGTGTCACCTATAC
TGCTGTACTTTAACTGAGTACAGAGCAGCTGTACTGCTGTATGATACGTT
CTATTTTCAAGTGCAAAAAAAAAAGGTCGTTTGAATTTTCAGCGTGCCAG
GTGTAAACCTCGAGCGATACTTCTCTCCACCGGTTGAATGAACCCACTTC
CAACCCAACCTCCTGCGGACGGAGAGCAGTATACGGAGGATACAGCAAAG
AAGTTTTCGCCTTGATACGTGGTGTAGAGAGCGAGAGCGTGCCTGCTGTG
ACTGCCGGTGTTTTGATGTCTGTGTCGCGCGACTGCTGTATGCCTCTGCT
GCGGACGCACGCCAGCCCACACTCGCTACTAAGAGTCGTTCCTCAGATGC
TATGTTTTGCACGGCTGGCACGCTTCCACCACATGAACCAGCGGCGAAGG
TGTTGGCACAGTGACTGCAGCGTTGTAGGGAACCCTTTTTGAGCTCGCTG
CCTTCAGAAATCACGGCGCAGTGATCGGTGTTTTCAACTGAAACGTAGTG
GTGTATCGTCACCTTCTTCCCTAGAACACTGTTGCGGAGAGGCCGGGCTG
ATTTGGCCAATCACATGATGTGCCGACATGGGCTCGCCTGGCAGATCAAA
TATTCTTTCCAAATATCCGTTCATTCCGGGATTTTCCGGAATTTGAGAAG
ATAAATCCTTTCTGTTGCAGTCACGGAGCCTCTCGGTGAAACCTCGGGGG
AACCAAATAAGGATATTTGAGATAATAAATCATTTTGCGCAAACTCTCTA
ATTCTGCAGACTTTCTCTCGTTTACCACTTGCCATTGTACTGGATGGACC
CGCGTGCCATATCCTGTATGTTTGCGGGCCGCCCGAGGGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig851:104100..105541-

>mRNA_P-littoralis_Contig851.14.1 ID=mRNA_P-littoralis_Contig851.14.1|Name=mRNA_P-littoralis_Contig851.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig851:104100..105541- (Pylaiella littoralis U1_48)
ATGAAACGGCATTTCTACGTTTTACTTACAGCTTGCAGTTTCACGCCATT
TCGCAGGGCGGCCGTTTTGCAGACCTACTTTTCACCACTTTCGAGTTGCG
GACCTTCTCTTGAATTTTTTTCCGAGCAAGACCATTTTCATTTTCTCTCT
AATTCTGCAGACTTTCTCTCGTTTACCACTTGCCATTGTACTGGATGGAC
CCGCGTGCCATATCCTGTATGTTTGCGGGCCGCCCGAGGGTAA
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