mRNA_P-littoralis_Contig85.169.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig85.169.2
Unique NamemRNA_P-littoralis_Contig85.169.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig85.169.2 vs. uniprot
Match: D7G2K9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2K9_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 6.670e-92
Identity = 195/279 (69.89%), Postives = 199/279 (71.33%), Query Frame = 1 
Query:    1 MGHVRKYKKVKAMDSFAKGGGGGRMGMGRKGGSDLDRNLPPDVKNHQAQKQSN----KAKKNKNKRRLPQWAHEELKETAKRVREEHADPSGKGRQPEVQRATMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSSTNKHRKKYLDGKKRKNRLKKQGLWEEVQRRERLDEEQAAAGFGGVERAAGXXXXXXXXXXXXXXXXXXSN--------------WGLLGRADGGEGT-QLPQKERIRFGDVAHAPPDLAKIPKPRGFKGQGQAKPWARQAAA 780
            MG VRKYKKVKAMD FAKGG GGRMGMGRKGGSDLDRNLPPDVKNHQAQ+ +N    K KK KNKRRLPQWAHEELKETAKRVREEHADP GKGRQPE QRA MEGKREDESMRQFNKRVREGTAQLLKDEFKEHSSTNK                   LW                          XXXXXXXXXXXXXXXXXX                WG+LGRAD  EG  QL QKERIRFG+VAHAPPDLAKIPKPRGFK QGQAKPWARQAAA
Sbjct:    1 MGRVRKYKKVKAMDPFAKGGCGGRMGMGRKGGSDLDRNLPPDVKNHQAQRLNNLEEGKDKKKKNKRRLPQWAHEELKETAKRVREEHADPGGKGRQPEPQRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSSTNKXXXXXXXXXXXXXXXXXXXLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAA 279
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BLAST of mRNA_P-littoralis_Contig85.169.2 vs. uniprot
Match: A0A835YUV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV8_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.910e-24
Identity = 97/266 (36.47%), Postives = 132/266 (49.62%), Query Frame = 1 
Query:    1 MGHVRKYKKVKAMDSFAKGGGGGRMGMGRKGGSDLDRNLPPDVKNHQAQK-QSNKAKKNKNKRRLPQWAHEELKETAKRVREEH--------ADP-SGKGRQPEVQRATMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSSTNKHRKKYLDGKKRKNRLKKQGLWEEVQRRERLDEEQAAAGFGGVERAAGXXXXXXXXXXXXXXXXXXSNWGLLGRADGGEGTQLPQKERIRFGDVAHAPPDLAKIPKPRGFKGQGQAKPWAR 768
            MG VR+YKK K +D  +K     R    +K   D++ NLPPD  NHQAQ+ +++   K + K+RLP+WA EEL+ETAKR RE          A P  G+   P+V+   +  KR DES+R+FN+RVR+  A+ LKD  K  SST   RKK+L  K +K +L++QGLWEE  + +   EEQ  A                                        E     + E I+FG+  H PP    +PK +G K     KPW R
Sbjct:    1 MGRVRRYKKAKNLDITSK-----RKRADKK---DVEHNLPPDTANHQAQRLKADGTLKRRAKQRLPEWAKEELRETAKREREADKQLLAGAAATPLPGENDTPKVK---ITPKRTDESLREFNERVRKVAAEALKDNAKRASSTVARRKKHLAEKSQKKKLQRQGLWEE-HKMQVAREEQGIA----------------------------------------EERDFSKPEHIQFGETVHEPPRFQSMPKLKGLKPDLAEKPWLR 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig85.169.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2K9_ECTSI6.670e-9269.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUV8_9STRA1.910e-2436.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig85contigP-littoralis_Contig85:575068..579285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1090
Hectar predicted targeting categoryother localisation
Exons6
Cds size1089
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig85.169.2prot_P-littoralis_Contig85.169.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig85 575068..579285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791720.3987594-CDS-P-littoralis_Contig85:575067..5752231680791720.3987594-CDS-P-littoralis_Contig85:575067..575223Pylaiella littoralis U1_48CDSP-littoralis_Contig85 575068..575223 +
1680791720.4281988-CDS-P-littoralis_Contig85:576298..5764301680791720.4281988-CDS-P-littoralis_Contig85:576298..576430Pylaiella littoralis U1_48CDSP-littoralis_Contig85 576299..576430 +
1680791720.4402018-CDS-P-littoralis_Contig85:577004..5771351680791720.4402018-CDS-P-littoralis_Contig85:577004..577135Pylaiella littoralis U1_48CDSP-littoralis_Contig85 577005..577135 +
1680791720.452129-CDS-P-littoralis_Contig85:577866..5781211680791720.452129-CDS-P-littoralis_Contig85:577866..578121Pylaiella littoralis U1_48CDSP-littoralis_Contig85 577867..578121 +
1680791720.4614735-CDS-P-littoralis_Contig85:578829..5790601680791720.4614735-CDS-P-littoralis_Contig85:578829..579060Pylaiella littoralis U1_48CDSP-littoralis_Contig85 578830..579060 +
1680791720.4781137-CDS-P-littoralis_Contig85:579101..5792851680791720.4781137-CDS-P-littoralis_Contig85:579101..579285Pylaiella littoralis U1_48CDSP-littoralis_Contig85 579102..579285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig85.169.2

>prot_P-littoralis_Contig85.169.2 ID=prot_P-littoralis_Contig85.169.2|Name=mRNA_P-littoralis_Contig85.169.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=363bp
MGHVRKYKKVKAMDSFAKGGGGGRMGMGRKGGSDLDRNLPPDVKNHQAQK
QSNKAKKNKNKRRLPQWAHEELKETAKRVREEHADPSGKGRQPEVQRATM
EGKREDESMRQFNKRVREGTAQLLKDEFKEHSSTNKHRKKYLDGKKRKNR
LKKQGLWEEVQRRERLDEEQAAAGFGGVERAAGATGGGGRHRGGGEGDGG
GSNWGLLGRADGGEGTQLPQKERIRFGDVAHAPPDLAKIPKPRGFKGQGQ
AKPWARQAAANASANAGSGRGGGRGGGGDPMGNAAGSSGKQSQKHKPAAE
EGRAEMGGGGGGQSQERRKMEVEAKKAQKRQIDGGNAAEGPGGVQRAQEE
ETRGPDAVRRQRP
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mRNA from alignment at P-littoralis_Contig85:575068..579285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig85.169.2 ID=mRNA_P-littoralis_Contig85.169.2|Name=mRNA_P-littoralis_Contig85.169.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4218bp|location=Sequence derived from alignment at P-littoralis_Contig85:575068..579285+ (Pylaiella littoralis U1_48)
ATGGGTCACGTAAGGAAATACAAGAAAGTGAAGGCGATGGACTCTTTCGC
CAAGGGTGGCGGTGGTGGCAGGATGGGGATGGGGCGGAAGGGTGGCAGCG
ACCTGGACCGAAATCTGCCTCCGGACGTCAAGAACCATCAGGCACAAAAG
CAGTCAGTACGTACGATAAAGCAGCGTAGCAGTACCAGCTACTGCAGGGT
GTGTAGAGATGGTGTCGTGGCGTGGTCAAATTATATCCTGCGGTTTTAGG
CATGCACGAGATGGGTCTGCAAGAGCACTCCTGTCAGCGTTCTCACATAC
AAGTAAGTGTGGTCATCCTGACTGTTTCTTCGGGACACAGGGAGTGTTTT
CCTGTGTTTCGATTTTTTTTCGCGCGACATGCGGCGGGTTGATAATGTTA
GTTGGGGTGGACACCACGAGCCTCCTGTTCCCGTGTATGAAAGGGGGAGG
GGCGATAGCAGCAGTGTAGCAGCACAGCAGCAGGTTTTCGGGACGGCGAG
CGATTAGTACCGTATGGCTACTGCTGCAAGAGGGAAGTAATCCTGCCGCC
GTCTCACCTACTTGCAGTTGAGCCAGCGATATCTACGCTGGAAGCGGATG
GGCGGCCCGGCATGCTAATCTGCAAGGGCAACTGCTCACGCCGCAGAGTT
AACCTCCGCTGCTGCTAGTGTCGGGCGAGAGTTCAAGAGCTGCAAGACCA
AGAATAGCAGAACTACCCGCGGGGCTCGCGCAGTAATTTTGTTTATTCTT
GGCCTTGTGCCTCTTGATCTCTCCCCTATACGGCAGGTTGTTTCTTTTTA
CCGCAGGCCCGGACTTGCCCACTATGTATGTGACGAAAATGCCCCAGAGA
TTGCCTCCATTTACATCCGCCGTCAGCACGGCAGTGATACCCGTATACAC
GCCACGTGTTTTGTGCGCTGTTCTCACAATCACGGATGTAATTGACCACA
CCCACACATCCCTCACAAGCGGTACCCTCACAGTCATAGGTGCCGTCGAC
CAGTAGCAGTAGCGCGTCGCATCTCGTGATATGATAGCCCACGGATGCCC
ACGAATGATACATACACACGGGTATATCACAAGCATTACCATATGATAAG
TGATACCTTCTTCTCTAACGCCCGCTGGCCTCACGCACACCATTGTTTGG
CTTGCAGCACCCGCTGCTGAAAAAAAAGCACGTGTCAAATTGATCCGTTT
GCCAATACCCTTTCCGCGAACGACCGCAGAGAACAAAGCCAAGAAAAACA
AGAACAAGCGCCGGCTGCCCCAGTGGGCGCACGAAGAGCTCAAGGAGACG
GCCAAGAGGGTCCGAGAGGAGCACGCCGATCCCTCGGGCAAAGGACGACA
ACCCGAGGTTCAGGTTTGTGCTTTTCATCTGTAGGTTGGATTGTGGACGT
ATACATACGATACTTCGAAGTAATACGAGTATCTCGTAAGGCATCTGAGG
AGTCTATGCACCCCTCGCTTGTTTTTAGCACTGAAGTGCTTTGTAGTTGA
TCAGGCTGCGTGACTTGCCTACCTTCTCCTCGTATCATGACATTTTTTTT
GTCTATCTAGCCGCATCGACCCTTGCCTTCGTCAATATAGTGTTGCGAGC
ACGCCGACCCAGAGGTAGGTCGCGCTAGCCTCTCGGGAACTCTACTGTAG
CCTGGGTTTGGTTTCTAGCTCGGCTCTTTGGCGCCTTTTCATCGTCAAGC
CCGCCGTCGAGAAAGCAGCAGTAGCCTTCTTTCGTGAACCCATGCGAAGA
ACTCTGCGCGACCTGTGGATGCATATGGATGCACCACATGCGTCAGTCCA
AATGGCGTGTACGAACCGCTCAAAAGAACTGCTTACCCACGCACCATGTC
GTATGCCGCGTTCGTTCCTGTGGGATATGCCACCGCCACGTATTCATGTG
GTGTGCATCCGTTGTTGTGATGTTTGTGTTTTTTCAGCGGGCAACTATGG
AGGGCAAGCGCGAGGACGAGAGCATGCGGCAGTTCAACAAGCGGGTGCGG
GAGGGCACGGCACAGCTGCTCAAAGACGAGTTCAAGGAGCACAGCTCCAC
CAATAAGCACAGGAAAAAGTGAGAACAGTTTGAGTGATTCGTTTTGCTCG
AGGATACTATGATACCAACGCCGACCGTTCGAATCTACGTGGAATCTTCC
ATTTTTCTGTGTCACGAACAGCTAGAGGGTCGCCTCGGGTGGTGCGCCGT
TATGTTCTTCTCCCAGCAACCTCAGGAGCAAAGAACTTGTACTTTTTTTC
GTTCATGCAGGACATCGGTACCCGTTGTGTACATATTTTCGGCTCATGAT
CATCATCCACGAACGGCCCAGGATACAACAAGTGCCAGTGGTTTGATTCA
TGCTCGAGGTCAATGTTCTGTTGATCTTCCAAAAATGGTGCGTTTGTTTC
TTTCTGCCCATCAGTTAGTGACGGAAAAGCTTCGACTGTCTCGAGGCGGT
TGGTGCTATCGCTGCCGAAGGACCTTCGCCTATGTCATGGTAGCACCAAT
GCGATGCCGGTATTATCGCTGACCAAATGGTCGTATTATCGATGGTGACC
TACACATCCGTGTAGTATCCACCGTTGTGTACGTGGTTTCAGCGTGTCTC
TCAATTGGTTTCAACAGTGTAGAGGTTACCTGAAGAATTGAGCACATGGC
CACCCCCCATGGAAATATTGAAATTATTGAAATATTGCGCACAAGGTGCT
TACCAGCAAACAAGATACTTGTAGAATTCCTGACACTCTATTTCTCTCTC
TCGCTCTTTCTCGTGACTGTATGCACACGAACTCGCACACAACGAAAAGA
TACCTAGACGGCAAGAAGCGCAAGAACAGGCTGAAGAAGCAGGGGCTGTG
GGAAGAGGTGCAGCGGCGCGAGCGCCTCGACGAAGAACAGGCAGCAGCAG
GGTTCGGCGGGGTAGAGAGGGCCGCGGGGGCAACAGGTGGCGGCGGCAGG
CATCGCGGTGGCGGCGAAGGTGATGGTGGCGGAAGCAACTGGGGACTGTT
GGGACGGGCGGATGGTGGCGAGGGCACCCAGCTCCCTCAAAAGGAACGCA
TCAGGTACGTTATTATTCGGCCAGGTGACATGAACCCGTACTTCCCTAGT
CCAGCATTGCGTACGTAGCCCAAATCTGTTACTGCTGTTGACTCAAGCAC
TCAATTTTTAGTCTATCGTACCCGTAGTAGTGTTAGCTCACAACATGGAC
CTGACAGGTTGTTCCTTTCAGAACTACCAGCAGCTGTTGTACGGGCAGAC
TCGGTGGTGGACCTTTTTCGAAGGTGCGAAACGCTTGCACCGAGGGTGTG
TCAACCCTGCTCCCGCGGCACACCCTGTCGCCGTCATCATGTCATCATGA
CAAAAAATATCGTGGCGCGTCCTTCTTCTCCGGTACTATTCATTTTTTTG
CGCTAGAAATGCTCTACCAGGTAGCTTTGAGCAGACCTGAATGCTTGTCA
TGTTTGTTCGGCCGCCCTATTGGAGGCAGGCAGTCTTAGGCCGTCCAGCT
GTCTTATCTTTTTCAATGCGTACTACTGTACACGCCGGCACCTGATTTTA
TTGCACGGACGATGACGGTCTTGCTGCCACCAGTATAGGAAAACATGGAT
GCCTTCAGTTTAGCTACCCTCTTGGCTTTTATTACGAAGTACTCCGGAGT
ATTATACTATTGTACTTCACTCCCGCCACTGCTGCCGTAGCTAACAACAG
CAACCAAGCTTGATAACCGCGACATACAGGTCCACGCGTTTGCCCGCCCG
TTGCCCAAATAGATTCGGAGACGTCGCGCACGCGCCCCCAGACCTCGCTA
AGATTCCTAAGCCGCGGGGTTTCAAGGGTCAGGGGCAAGCCAAGCCGTGG
GCGAGACAAGCGGCCGCCAATGCTAGCGCTAACGCCGGGAGCGGCCGCGG
TGGCGGCAGAGGCGGCGGCGGTGACCCGATGGGCAACGCTGCGGGTTCTA
GCGGAAAGCAAAGTCAAAAACACAAACCAGCAGCAGAAGAGGGGTAAGAA
CAACAATACCGGCGGGTCTAAAGAGGGAGGGGAGACGGGCGGAGATGGGG
GGGGGAGGGGGGGGGCAAAGCCAGGAGCGGAGGAAGATGGAGGTCGAGGC
GAAAAAGGCGCAAAAGCGCCAGATAGATGGAGGAAATGCGGCAGAGGGTC
CAGGAGGCGTACAGCGGGCTCAAGAAGAAGAGACGCGCGGGCCAGACGCA
GTTCGTAGGCAGCGACCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig85:575068..579285+

>mRNA_P-littoralis_Contig85.169.2 ID=mRNA_P-littoralis_Contig85.169.2|Name=mRNA_P-littoralis_Contig85.169.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1089bp|location=Sequence derived from alignment at P-littoralis_Contig85:575068..579285+ (Pylaiella littoralis U1_48)
ATGGGTCACGTAAGGAAATACAAGAAAGTGAAGGCGATGGACTCTTTCGC
CAAGGGTGGCGGTGGTGGCAGGATGGGGATGGGGCGGAAGGGTGGCAGCG
ACCTGGACCGAAATCTGCCTCCGGACGTCAAGAACCATCAGGCACAAAAG
CAGTCAAACAAAGCCAAGAAAAACAAGAACAAGCGCCGGCTGCCCCAGTG
GGCGCACGAAGAGCTCAAGGAGACGGCCAAGAGGGTCCGAGAGGAGCACG
CCGATCCCTCGGGCAAAGGACGACAACCCGAGGTTCAGCGGGCAACTATG
GAGGGCAAGCGCGAGGACGAGAGCATGCGGCAGTTCAACAAGCGGGTGCG
GGAGGGCACGGCACAGCTGCTCAAAGACGAGTTCAAGGAGCACAGCTCCA
CCAATAAGCACAGGAAAAAATACCTAGACGGCAAGAAGCGCAAGAACAGG
CTGAAGAAGCAGGGGCTGTGGGAAGAGGTGCAGCGGCGCGAGCGCCTCGA
CGAAGAACAGGCAGCAGCAGGGTTCGGCGGGGTAGAGAGGGCCGCGGGGG
CAACAGGTGGCGGCGGCAGGCATCGCGGTGGCGGCGAAGGTGATGGTGGC
GGAAGCAACTGGGGACTGTTGGGACGGGCGGATGGTGGCGAGGGCACCCA
GCTCCCTCAAAAGGAACGCATCAGATTCGGAGACGTCGCGCACGCGCCCC
CAGACCTCGCTAAGATTCCTAAGCCGCGGGGTTTCAAGGGTCAGGGGCAA
GCCAAGCCGTGGGCGAGACAAGCGGCCGCCAATGCTAGCGCTAACGCCGG
GAGCGGCCGCGGTGGCGGCAGAGGCGGCGGCGGTGACCCGATGGGCAACG
CTGCGGGTTCTAGCGGAAAGCAAAGTCAAAAACACAAACCAGCAGCAGAA
GAGGGACGGGCGGAGATGGGGGGGGGAGGGGGGGGGCAAAGCCAGGAGCG
GAGGAAGATGGAGGTCGAGGCGAAAAAGGCGCAAAAGCGCCAGATAGATG
GAGGAAATGCGGCAGAGGGTCCAGGAGGCGTACAGCGGGCTCAAGAAGAA
GAGACGCGCGGGCCAGACGCAGTTCGTAGGCAGCGACCT
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