mRNA_P-littoralis_Contig10.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.130.1
Unique NamemRNA_P-littoralis_Contig10.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: D7FQE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE1_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 3.100e-43
Identity = 78/100 (78.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    4 ICLIYEDLVGEYSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRGIDEADLKNVSVTISPAMSPTGQRLQR 303
            ICLIYEDLVGEYSLATRLWLFILFQWVAFIFMA LGATVPD PEDVTIQ QRT FLSSK+VD+++DE+D+D++ ID+A L  V VTISPAMSP G+ L R
Sbjct:  332 ICLIYEDLVGEYSLATRLWLFILFQWVAFIFMAGLGATVPDVPEDVTIQQQRTMFLSSKMVDKIADEMDEDMQNIDQAALDGVKVTISPAMSPKGEELHR 431
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BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A6H5KW18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW18_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.120e-40
Identity = 78/100 (78.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    4 ICLIYEDLVGEYSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRGIDEADLKNVSVTISPAMSPTGQRLQR 303
            ICLIYEDLVGEYSLATRLWLFILFQW+AFIFMA LGATVPD PEDVTIQ QRT FLSSK+VD+V+DE+DDD++ ID+A L  V VTISPAMS  G+ L R
Sbjct:  852 ICLIYEDLVGEYSLATRLWLFILFQWLAFIFMAGLGATVPDVPEDVTIQQQRTMFLSSKIVDKVADEMDDDMQKIDQAALDGVKVTISPAMSSKGEELHR 951
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BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A7S3HR83_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HR83_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.160e-12
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   31 GEYSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRG 225
             +YS   R W+FI FQWV F     +   +PD PE++ IQLQR AF+  K++D+V DE++DDV G
Sbjct:  118 NDYSTTVRFWIFIAFQWVCFSLQYIIMEAIPDVPEEIDIQLQRAAFIERKLIDKVGDELNDDVLG 182
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BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A482SKA7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKA7_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 1.520e-10
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   22 DLVGEYSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRGIDE 234
            D++  YSL  R+W+FI FQWV  +      A VPD PEDVTIQL+RT F + KVV++V DE  D+    DE
Sbjct:  441 DVLWGYSLQGRVWIFIGFQWVLIMCQFVAQAIVPDIPEDVTIQLERTHFYNEKVVEKVEDEDYDETEADDE 511
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BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A7S3GYD5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYD5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.570e-10
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   49 TRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDE 204
            TR W FI FQW+ F   A +   +PD PE++ IQLQRTAF+  K++DR+ DE
Sbjct:  109 TRYWCFIGFQWICFALQAFIMVAIPDVPEEINIQLQRTAFIQRKLIDRIPDE 160
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BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A7S2G4I0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4I0_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.910e-8
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   37 YSLATRLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVD 189
            Y L+TR+W+FILFQ+V    M  L A++PDTPEDV +Q++RTAF    +V+
Sbjct:  666 YKLSTRIWMFILFQYVLVALMTGLDASIPDTPEDVEMQVERTAFFEKFIVE 716
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BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Match: A0A7S4E8J5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8J5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.440e-5
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   52 RLWLFILFQWVAFIFMAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDD 216
            R + F   Q+  F  M  +   VPDTPEDV IQL+R AF+ SK++DR  DE  DD
Sbjct:  690 RAFAFFACQYFVFALMLGIAVAVPDTPEDVEIQLKRKAFICSKLLDRTPDEESDD 744
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FQE1_ECTSI3.100e-4378.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW18_9PHAE1.120e-4078.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3HR83_9STRA1.160e-1247.69Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SKA7_9ARCH1.520e-1050.70Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3GYD5_9STRA9.570e-1051.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2G4I0_9STRA3.910e-852.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4E8J5_9STRA2.440e-549.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:499210..501010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQE1
PFAMsAnoct_dimer,Anoctamin,ERK-JNK_inhib
Model size538
Max annot lvl2759|Eukaryota
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.99e-22
EggNOG OGsKOG2514@1|root,KOG2514@2759|Eukaryota
Descriptionintracellular chloride channel activity
Cds size222
COG categoryU
BRITEko00000,ko00001,ko04040
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789332.4033856-UTR-P-littoralis_Contig10:499209..4994291680789332.4033856-UTR-P-littoralis_Contig10:499209..499429Pylaiella littoralis U1_48UTRP-littoralis_Contig10 499210..499429 -
1680789332.4316196-UTR-P-littoralis_Contig10:500914..5010101680789332.4316196-UTR-P-littoralis_Contig10:500914..501010Pylaiella littoralis U1_48UTRP-littoralis_Contig10 500915..501010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789332.413381-CDS-P-littoralis_Contig10:499429..4995671680789332.413381-CDS-P-littoralis_Contig10:499429..499567Pylaiella littoralis U1_48CDSP-littoralis_Contig10 499430..499567 -
1680789332.4237564-CDS-P-littoralis_Contig10:500830..5009141680789332.4237564-CDS-P-littoralis_Contig10:500830..500914Pylaiella littoralis U1_48CDSP-littoralis_Contig10 500831..500914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.130.1prot_P-littoralis_Contig10.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 499430..500914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.130.1

>prot_P-littoralis_Contig10.130.1 ID=prot_P-littoralis_Contig10.130.1|Name=mRNA_P-littoralis_Contig10.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MAALGATVPDTPEDVTIQLQRTAFLSSKVVDRVSDEIDDDVRGIDEADLK
NVSVTISPAMSPTGQRLQRASCD*
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mRNA from alignment at P-littoralis_Contig10:499210..501010-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.130.1 ID=mRNA_P-littoralis_Contig10.130.1|Name=mRNA_P-littoralis_Contig10.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1801bp|location=Sequence derived from alignment at P-littoralis_Contig10:499210..501010- (Pylaiella littoralis U1_48)
CAGATCTGCCTGATCTACGAAGATCTGGTGGGGGAGTACAGCCTGGCCAC
GAGGCTGTGGCTCTTCATCCTCTTCCAGTGGGTGGCGTTTATTTTTATGG
CGGCCCTGGGCGCCACGGTGCCGGATACCCCTGAGGACGTAACCATCCAG
CTCCAGCGCACGGCGTTCTTATCTTCAAAGGTGAATACCCCCCACCCCCC
CACCCCCCTACCAGTTCCCTCATATTCAGGCACCTACATACCTGTGCACA
CAAAATAAGTGATTCCATTCCGCCGCCCCCCATTGTACCGCCCCCCCCTT
TGTACGTATGTTTGTATGTATTTGTGATGTATGTATGTATGTATGTATGT
ATGTATGCATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTATATATGTATGCATGCATGTATGTAGTATATGTATA
CGAAGTATGTATGTACAGATTTTTGTATGTGCACATGTATACATGCATTT
GTATGTGTAAATATCTGTATCTTTATACGTCGTGTACATACTACCCAGAC
AAAACACGCCGTCGCTCACTTTGACCATTTTTGCTGCCCGTGTGTACTTG
ATTTCAAGAGTCACCACGCGCTATCATAAGCTTGTTAAAAAAGAACCGCG
TGTACCTCACAGCAATTTCCGTTCGTCGCGATCTAGCATAACTATGGACA
TTTTTTTCACTGTTTCCATCAAGCAAGCAAGTGGTTGTCGCCAACTATGA
CATGTGCTGTGTAAAAAGCAAGAGCACGAGCCACGGACAGCAGTCATCTT
ATATACGTACGTAGCTTTGAAGCGGGGCTAGCAGCACATCGTGCTTGCAG
TAGTAGTAGTAGCGGTTTCTTCACTTTCCGGAGATACTGGTTCATTACTA
GAGGCTGCGGTAATCGTACGTGTTGTGTGTATGCTGTGGCAGGAGAAACG
TTCCGTCTATGGTATGTAGGTGGCGAGAATAGGGGCCGACCCTTCCAGAT
CAAAACGGGAAATAAATCTCGATCCTGGCTGACGACACCCGAGGATTTTC
GGCCGTTCAGCAACAACTGCCGATCGATGTTGAGCAACAGGAAAACTGCG
GGCACCTTCACTGTCGTTGTGTATCTGTCGGGGGAAAAGGTATACAGTAG
CCGCCGTCGCCAAGGTCTTCGCGTTAACCCTGCCACCCCTCCTCCAAACG
TCACAATTTAGAGGATAAATGTGCAGGCCAAGACAAACGGACGTAACTGA
CAGACAGGACTCATCTCCACATCATCCATGACTAACTCGTGCCAAGCTAG
GCGTATGCATGTGGCACATACACACACACGCATACACGACGCATACACGC
ACAAACGCACACTTTCACAAAACCCTCTCACCTACCTATCATACCTTCCT
GCCACCCCCCTCTTCCCCCCACACACTTTGGACTGCATAATAGGTGGTGG
ACAGGGTTAGTGATGAAATTGACGATGACGTGCGAGGAATCGATGAGGCG
GATCTGAAGAACGTTAGTGTCACCATCAGCCCCGCCATGTCGCCCACGGG
GCAGAGGCTGCAGCGGGCGAGCTGTGATTGATGAGCAGACAGACTGTAGA
AGAGTAAATAAACGAGAGCAACAAACAAATCAGGAGCGGTGCGTGTGTAT
TTTTTTGGTATGAAATGACCAACATTTTTATTTGTTGTCTGCAAGAGCAG
CAAGCACAAAAAAAACGCGACCGATTGTTGTAGTGACATCACTCAACAAG
ACTGAGGTTGTTTTCCCGTTTTTTTTTGTCGCAAATAAAACGATCTGTAA
T
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:499210..501010-

>mRNA_P-littoralis_Contig10.130.1 ID=mRNA_P-littoralis_Contig10.130.1|Name=mRNA_P-littoralis_Contig10.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig10:499210..501010- (Pylaiella littoralis U1_48)
ATGGCGGCCCTGGGCGCCACGGTGCCGGATACCCCTGAGGACGTAACCAT
CCAGCTCCAGCGCACGGCGTTCTTATCTTCAAAGGTGGTGGACAGGGTTA
GTGATGAAATTGACGATGACGTGCGAGGAATCGATGAGGCGGATCTGAAG
AACGTTAGTGTCACCATCAGCCCCGCCATGTCGCCCACGGGGCAGAGGCT
GCAGCGGGCGAGCTGTGATTGA
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