mRNA_P-littoralis_Contig847.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig847.19.1
Unique NamemRNA_P-littoralis_Contig847.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.280e-8
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 3 
Query:  294 PLLFSQGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNRAGLL 428
            P L  QGKYD AGPLY+RSLAI EKV+GPDH  VA +LNNRA LL
Sbjct:  411 PFLIFQGKYDQAGPLYDRSLAILEKVHGPDHPDVAQSLNNRAELL 455
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BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.080e-7
Identity = 42/89 (47.19%), Postives = 47/89 (52.81%), Query Frame = 3 
Query:  153 VLLNNRGGVVSFWRAR*EPSEISSFFRGVQISR*IAFVLGGPLPHINPLLFSQGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNRA 419
              LNNR G++S       P  +SSF         I F               QGKY+ AGPLYERSLAIREKV GPDH  VA +LNNRA
Sbjct:  765 TALNNRAGLLS----NVPPHSLSSFHSSNTHHVFITF---------------QGKYEEAGPLYERSLAIREKVLGPDHPDVAQSLNNRA 834
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BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: A0A6H5KWM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.120e-7
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:  291 NPLLFSQGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNRAGLL 428
            +PL   QG YD AG LY+RSLAIREKV GPDH  VA +LNNRAGLL
Sbjct:  123 HPLHHIQGNYDQAGMLYKRSLAIREKVLGPDHPNVAQSLNNRAGLL 168
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BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.650e-7
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 3 
Query:  309 QGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNRAGLL 428
            QGKYD A PLY RSLAIREKVYGPDH  VAT+LNNRA  L
Sbjct:  395 QGKYDAAEPLYVRSLAIREKVYGPDHPEVATSLNNRAEFL 434
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BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.950e-6
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  297 LLFSQGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNR 416
            LL +QGKYD A  LYERSLAIREKV GP+H  VA +LNNR
Sbjct:   12 LLKAQGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLNNR 51
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BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.030e-6
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:  300 LFSQGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNRAGLL 428
            L SQGK++ A PLY RSLAI E+VYGPDH  VAT LNN AGLL
Sbjct:   78 LESQGKHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLAGLL 120
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BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: A7BW16_9GAMM (TPR repeat protein n=1 Tax=Beggiatoa sp. PS TaxID=422289 RepID=A7BW16_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 3.670e-6
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 3 
Query:  306 SQGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNRA 419
            SQG+YD A PLYERSLAI EKV+G +HL+VAT+LNN A
Sbjct:    4 SQGEYDKAKPLYERSLAIWEKVHGKEHLSVATSLNNLA 41
[Close]
BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.170e-6
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:  294 PLLFSQGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNRAGLL 428
            P+ F QGKY+ A PLY  SLAI EKVYGPDHL VA  LNN AGLL
Sbjct:   83 PVTF-QGKYEEAEPLYMLSLAIDEKVYGPDHLEVAEDLNNCAGLL 126
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BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: UPI0010816EB9 (tetratricopeptide repeat protein n=1 Tax=Candidatus Chloroploca sp. M50-1 TaxID=2528176 RepID=UPI0010816EB9)

HSP 1 Score: 60.1 bits (144), Expect = 6.450e-6
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:  297 LLFSQGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNRAGL 425
            LL +QG YD A PLYER+LAIRE+V GP+H   AT+LNN AGL
Sbjct:    4 LLRAQGNYDAARPLYERALAIRERVLGPEHPDTATSLNNLAGL 46
[Close]
BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.140e-6
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:  297 LLFSQGKYDGAGPLYERSLAIREKVYGPDHLAVATALNNRAGLL 428
            LL +QGKYD AG LYERSLAIREK  GPDH  VA +LNN A LL
Sbjct:  827 LLKAQGKYDEAGKLYERSLAIREKALGPDHPDVAQSLNNWAVLL 870
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig847.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KIY6_9PHAE4.280e-873.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE1.080e-747.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWM2_9PHAE1.120e-771.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9V8_9PHAE1.650e-780.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Z8_9PHAE1.950e-672.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G180_ECTSI2.030e-672.09TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A7BW16_9GAMM3.670e-673.68TPR repeat protein n=1 Tax=Beggiatoa sp. PS TaxID=... [more]
A0A6H5K5H9_9PHAE5.170e-671.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0010816EB96.450e-667.44tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A6H5K4D0_9PHAE7.140e-672.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig847contigP-littoralis_Contig847:89561..91741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G180
PFAMsTPR_10,TPR_12
Model size1523
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons4
Evalue1.5e-06
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size168
COG categoryC
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig847.19.1prot_P-littoralis_Contig847.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig847 90392..90955 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791712.1946487-UTR-P-littoralis_Contig847:89560..903911680791712.1946487-UTR-P-littoralis_Contig847:89560..90391Pylaiella littoralis U1_48UTRP-littoralis_Contig847 89561..90391 -
1680791712.246299-UTR-P-littoralis_Contig847:90955..910421680791712.246299-UTR-P-littoralis_Contig847:90955..91042Pylaiella littoralis U1_48UTRP-littoralis_Contig847 90956..91042 -
1680791712.2602563-UTR-P-littoralis_Contig847:91304..917411680791712.2602563-UTR-P-littoralis_Contig847:91304..91741Pylaiella littoralis U1_48UTRP-littoralis_Contig847 91305..91741 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791712.2108903-CDS-P-littoralis_Contig847:90391..903971680791712.2108903-CDS-P-littoralis_Contig847:90391..90397Pylaiella littoralis U1_48CDSP-littoralis_Contig847 90392..90397 -
1680791712.2220008-CDS-P-littoralis_Contig847:90494..906171680791712.2220008-CDS-P-littoralis_Contig847:90494..90617Pylaiella littoralis U1_48CDSP-littoralis_Contig847 90495..90617 -
1680791712.234297-CDS-P-littoralis_Contig847:90916..909551680791712.234297-CDS-P-littoralis_Contig847:90916..90955Pylaiella littoralis U1_48CDSP-littoralis_Contig847 90917..90955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig847.19.1

>prot_P-littoralis_Contig847.19.1 ID=prot_P-littoralis_Contig847.19.1|Name=mRNA_P-littoralis_Contig847.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
MWLNNRAVLLHNQEKYTEAISLLKRALSIRTKKLGEDHPYTVGTRNSLEI
MRKEV*
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mRNA from alignment at P-littoralis_Contig847:89561..91741-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig847.19.1 ID=mRNA_P-littoralis_Contig847.19.1|Name=mRNA_P-littoralis_Contig847.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2181bp|location=Sequence derived from alignment at P-littoralis_Contig847:89561..91741- (Pylaiella littoralis U1_48)
GCCGTGAGAAATTTCCAGGAACTTTCTAGTGGTGGGATGTGACTGTAGCG
TTGTTGAACGTGCAGGTGAGGACCATCAGAATTTTCTGCGGAAAATCTTG
TGGACAGAGAGAGGCGGACGTAAATTTCGAAGAATATTCTTGTGGTGGGT
ATGTCTTGCTCAACAACCGGGGCGGGGTTGTGAGTTTTTGGAGAGCCAGG
TGAGAGCCGTCAGAAATATCCAGTTTTTTTCGTGGGGTCCAAATTAGTCG
GTGAATCGCGTTTGTTCTTGGTGGGCCACTGCCTCACATCAACCCACTAC
TTTTTTCGCAGGGCAAGTACGACGGAGCCGGGCCCTTGTATGAACGTTCC
CTTGCGATCCGCGAGAAAGTATACGGGCCTGATCATCTTGCGGTAGCAAC
AGCGCTCAACAACCGGGCTGGGTTGTTGGAGAGCCAGGTGAGAGCCGCCA
GAATTTTCCAGGAATTTTCTAGTGGTGGGATGTGACTGTAGTGTTGTTGA
ACGTGCAGGTGAGGGCCATCAGAATTTTCTGGGAAACATCTTGTGGACAG
AGAGGCGGACGTAAATTTCGAAGAATATTCTTGTGGTGGGTATGTCTTGC
TCAACAACCGGGCGGCGCGATTGTTGAGGAATTGTTCCTCCGCAATAAAA
GCGTACTCTTCCTGACCACACCCGCATGGCGTTGTCTTTTCGCCTCCAGG
GTAAGTATGCTGAAGCAGACCCTCTATATCTTCGAGCCATTGAGATCGGG
GAGAAGACGCTGGGTCCTGACCACCCAGCCCTTGCCATGTGGCTCAACAA
TCGGGCGGTGTTATTACACAACCAGGTGAGAGCCGTCAGAAACTTCCAGA
AAACCTCCTGTGGTGCTCTGTGGGGTCTTGCAGTGCTCAAGAGAGAGACT
TCGTTGTTTCGCAATAGAATTCGCTCCAGTCCGCGGACTTCTTGAAGGCA
AAACAGCAGCCGTCAGGTTTATCGACAGCATATTTGTGATGCCCTGTTCT
TGTTGAATTCCTCGATGTTGTGTACATGCTTCCAAAGAACTGTTGTTTTC
ACCCCAATTCTTCACACACGCGCGGCTTGCGCACTGGATTAAGTTTCTCA
ATCCTGCATCTCAAACGTCCACAGGAGAAGTACACGGAGGCAATTTCACT
ATTGAAGCGGGCCCTCTCAATCCGTACGAAGAAGCTTGGGGAAGACCACC
CCTACACGGTCGGCACTCGGAACAGCCTGGAAATTATGCGAAAAGAGGTT
CGTGCACAGTTAAGCCGTCTTGTAGGCAAGCGTCTTGCACAACCCATCGC
GCGAAGGCCTGGCATTTACTGAAATACTTCGTTCTGTATTGCAGGTGTGA
GACAAGATCGAAGAAGCTGCATGCGATAGTGGTCACTGCAAACGCGATGA
ACACGACAGGGGAAAGGGTCCCATGGGCATATGGCGTCAAGTGCAACGAG
ACGTCGCTTATATCGCTTATCTAGCTCACGTCCACGGCGAGTGTGGTGTC
GAACAATTCTTGCAATTGTCGTCGTTGGTATTGATGATCCGTCGATGGTT
CTTTTTCGCTACTCTTTTTGTTCCCAGCGCTTGGCTTGCATTGTACCGGG
CGTGACGTTGCTCTTACGTACTTCGTGTATTTTTCGTACATCTAATGACC
ATCCTTCTCTTAGAAAGAGCGGGCGATGTGTCTCGTAGTCGTGAGGCAAG
GTGGTAAAAACACAGCGACGTGTAACATATGAGTTGTGTCCAGTTGTATG
CTACGCCGCTTGAAACCAAACGCCTTATTTTGATCTTGCGTGTTACTGAT
AATCTTCGCTATCGAATCATTTCTAGCCAGACAGCTACGGTCGGCGATAA
AACCCAACATAAAACCCGCGGGCATAGTACGTGGGTGGGAGAAGCCTTGT
GGCCTCCGTTTTCTCCCCTTCCTTGCCTGCCTGGTATGGTAGCTGGTTTC
CTACTTGAATTTTTTTCCGCGTTGATTGTATCCTATGGTTTTGTTTTGTG
CGCGGAGGACGGTGGTCCCTAGGGGTCCCGTGCCTGTCATATGTGCATGT
TTTTTATTTTTGTTTTTATTTTTTCCGGTGCGGCGCTTTTCGCGCGTGTC
ATATTTTGTGACCATAGGCCCTAGCTTCTTGGAAAAGAGCAAATGTGAGA
AACAACACCAACGAATAGCGGATTGACACGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig847:89561..91741-

>mRNA_P-littoralis_Contig847.19.1 ID=mRNA_P-littoralis_Contig847.19.1|Name=mRNA_P-littoralis_Contig847.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig847:89561..91741- (Pylaiella littoralis U1_48)
ATGTGGCTCAACAATCGGGCGGTGTTATTACACAACCAGGAGAAGTACAC
GGAGGCAATTTCACTATTGAAGCGGGCCCTCTCAATCCGTACGAAGAAGC
TTGGGGAAGACCACCCCTACACGGTCGGCACTCGGAACAGCCTGGAAATT
ATGCGAAAAGAGGTGTGA
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