mRNA_P-littoralis_Contig842.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig842.9.1
Unique NamemRNA_P-littoralis_Contig842.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 9.210e-65
Identity = 100/152 (65.79%), Postives = 124/152 (81.58%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNLP 457
            +VD+SYAD  VDRRS +G+A+ VGG VV   + TQP+ + S  E+E+IAAGEGV+EAL+VR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS RSKHIDVRFH IRELF++G  + ++V TEEQHAD+LTK L R    Y+RK+LMNLP
Sbjct:   60 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 211
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BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 8.250e-64
Identity = 110/153 (71.90%), Postives = 127/153 (83.01%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNLPE 460
            YVDASYAD   DRRSVSG+A  VGG V+SH S TQ IVS S  E+E+IAAGEGV+EAL+VR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS RSKHIDVR+H IR LFRSG  S++ V T EQHADVLTKA S+   +Y+R+ LMNLPE
Sbjct:  230 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNLPE 381
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BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.520e-63
Identity = 106/152 (69.74%), Postives = 126/152 (82.89%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNLP 457
            YVDASYAD    RRSV+GIA+ VGG VVSH S TQ IVS S +E+E+IAAGEGV+EAL+VR VLSFIAPETSG+ IKVLEDN+GA++L+QNP SS RSKHIDVRFH IRELF+SG  SVE++ T+EQHAD+LTKAL R     +R +LMN+P
Sbjct:  219 YVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIP 370
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BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 2.120e-62
Identity = 108/153 (70.59%), Postives = 128/153 (83.66%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNLPE 460
            YVDASYAD   D+RSV+G+A  VGG VVSH S TQ I+S S  E+E+IAAGEGV+EAL+VR VLSF+APETSGS+IKVLEDN+GA+AL+QNPLSSGR+KHIDVR+H I  LFRSG  SV+ V T EQHAD+LTKALSR   +Y+R+ LMNLPE
Sbjct:  235 YVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNLPE 386
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BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 3.800e-62
Identity = 110/153 (71.90%), Postives = 128/153 (83.66%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNLPE 460
            YVDASYAD   DRRSVSG+A  VGG V+SH S TQ IVS S  E+E+IAAGEGV+EAL+VR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS RSKHIDVR+H IR LFRSG  S++ V T EQHAD+LTKALS+   +Y+R+ LMNLPE
Sbjct:  445 YVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 596
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BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 4.230e-62
Identity = 100/151 (66.23%), Postives = 124/151 (82.12%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNL 454
            +VD+SYAD  VDRRS +G+A+ VGG VV   + TQP+ + S  E+E+IAAGEGV+EAL+VR VLSFIAPETSG+TI+VLEDNEGA+AL+QNP SS RSKHIDVRFH IRELF++G  + ++V TEEQHAD+LTK L R    Y+RK+LMNL
Sbjct:  261 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVLEDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNL 411
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BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5KCR8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR8_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 4.230e-62
Identity = 97/152 (63.82%), Postives = 122/152 (80.26%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNLP 457
            +VD+SYAD  VDRRS +G+A+ VGG VV   + TQP+ + S  E+E+IAAGEGV+EAL+VR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS RSKHIDVRF  IREL ++G  + +++ TEEQHAD+LTK L R    Y+RK+LMNLP
Sbjct:   33 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSTRSKHIDVRFPFIRELVKAGKITADYISTEEQHADMLTKVLGRGKLEYHRKALMNLP 184
[Close]
BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5JFV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV7_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.200e-61
Identity = 100/152 (65.79%), Postives = 124/152 (81.58%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNLP 457
            +VDASYAD+ VDRRS +G+A+ VGG VV   +  Q + + S +E+E++AAGEGVREAL+VR VLSFIAPETS + IKVLEDN+GA+ALI+NP SS RSKHIDVRFH IRELF+SG  + E+V T EQHAD+LTK L R+ F Y+RK+LMNLP
Sbjct:  111 FVDASYADNEVDRRSTTGLAVTVGGTVVCASTKAQRVSAQSTSEAEYMAAGEGVREALFVRGVLSFIAPETSEAKIKVLEDNKGALALIENPFSSARSKHIDVRFHYIRELFKSGKITAEYVPTGEQHADMLTKVLGREKFEYHRKALMNLP 262
[Close]
BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.690e-61
Identity = 99/152 (65.13%), Postives = 125/152 (82.24%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNLP 457
            +VDASYAD+ VDRRS +G+A+ VGG VV   + TQP+ + S +E+E++AAGEGV+EAL+VR VLSFIAPETSG+ IKVLEDN+GA+A+ +NP SS RSKHIDVRFH IRELF+SG  + E+V T EQHAD+LTK L R+   Y+RK+LMNLP
Sbjct:  221 FVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALAMFENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKSEYHRKALMNLP 372
[Close]
BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Match: A0A6H5KJD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD2_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.320e-61
Identity = 99/152 (65.13%), Postives = 122/152 (80.26%), Query Frame = 2 
Query:    2 YVDASYADDPVDRRSVSGIAIMVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEHVRTEEQHADVLTKALSRDLFRYYRKSLMNLP 457
            +VD+SYAD  VDRRS +G+A+ VGG VV   + TQP+ + S  E+E IAAGEGV+E L+VR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS RSKHIDVRFH IRELF++G  + ++V TEEQHAD+LTK L R    Y+RK+LMNLP
Sbjct:  207 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEDIAAGEGVKETLFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 358
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig842.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR64_9PHAE9.210e-6565.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE8.250e-6471.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE2.520e-6369.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGI0_9PHAE2.120e-6270.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE3.800e-6271.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN6_9PHAE4.230e-6266.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCR8_9PHAE4.230e-6263.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFV7_9PHAE1.200e-6165.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWY8_9PHAE1.690e-6165.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJD2_9PHAE2.320e-6165.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig842contigP-littoralis_Contig842:82700..83198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3641.EOY12702
PFAMsLRR_8,NB-ARC,Pkinase_Tyr
Model size499
Max annot lvl33090|Viridiplantae
KEGG koko:K13459
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944
Exons1
Evalue4.96e-21
EggNOG OGsCOG2801@1|root,KOG4658@1|root,KOG0017@2759|Eukaryota,KOG4658@2759|Eukaryota,37T06@33090|Viridiplantae
DescriptionBelongs to the disease resistance NB-LRR family
Cds size399
COG categoryT
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791709.5301318-UTR-P-littoralis_Contig842:82699..827631680791709.5301318-UTR-P-littoralis_Contig842:82699..82763Pylaiella littoralis U1_48UTRP-littoralis_Contig842 82700..82763 +
1680791709.5608532-UTR-P-littoralis_Contig842:83162..831981680791709.5608532-UTR-P-littoralis_Contig842:83162..83198Pylaiella littoralis U1_48UTRP-littoralis_Contig842 83163..83198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791709.5478952-CDS-P-littoralis_Contig842:82763..831621680791709.5478952-CDS-P-littoralis_Contig842:82763..83162Pylaiella littoralis U1_48CDSP-littoralis_Contig842 82764..83162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig842.9.1prot_P-littoralis_Contig842.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig842 82764..83162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig842.9.1

>prot_P-littoralis_Contig842.9.1 ID=prot_P-littoralis_Contig842.9.1|Name=mRNA_P-littoralis_Contig842.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MVGGAVVSHKSSTQPIVSNSLAESEFIAAGEGVREALYVRHVLSFIAPET
SGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHLIRELFRSGVTSVEH
VRTEEQHADVLTKALSRDLFRYYRKSLMNLPE*
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mRNA from alignment at P-littoralis_Contig842:82700..83198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig842.9.1 ID=mRNA_P-littoralis_Contig842.9.1|Name=mRNA_P-littoralis_Contig842.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=499bp|location=Sequence derived from alignment at P-littoralis_Contig842:82700..83198+ (Pylaiella littoralis U1_48)
GTACGTCGACGCGAGCTACGCCGACGACCCGGTTGATAGACGTTCGGTCT
CCGGGATAGCAATCATGGTCGGTGGGGCTGTTGTCAGCCACAAAAGTTCA
ACGCAGCCGATAGTTTCGAACTCCTTAGCAGAGTCAGAGTTCATTGCGGC
TGGGGAGGGCGTGAGAGAGGCGTTGTATGTGCGGCATGTGCTATCGTTTA
TTGCGCCGGAGACGAGTGGTAGCACAATAAAGGTCCTTGAGGACAACGAG
GGGGCTATGGCGCTGATTCAAAACCCTCTCAGCTCTGGCCGTAGCAAACA
CATAGACGTGCGCTTCCATCTTATTCGGGAGTTGTTCAGATCGGGGGTCA
CCTCGGTCGAGCACGTCAGGACGGAGGAACAGCACGCCGACGTTCTCACC
AAGGCGCTGAGCCGGGACTTGTTCCGGTACTACCGGAAATCATTGATGAA
TTTGCCGGAGTAGGCGACTGTTTTCCCGTCTTTGTTTTGAGCACAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig842:82700..83198+

>mRNA_P-littoralis_Contig842.9.1 ID=mRNA_P-littoralis_Contig842.9.1|Name=mRNA_P-littoralis_Contig842.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig842:82700..83198+ (Pylaiella littoralis U1_48)
ATGGTCGGTGGGGCTGTTGTCAGCCACAAAAGTTCAACGCAGCCGATAGT
TTCGAACTCCTTAGCAGAGTCAGAGTTCATTGCGGCTGGGGAGGGCGTGA
GAGAGGCGTTGTATGTGCGGCATGTGCTATCGTTTATTGCGCCGGAGACG
AGTGGTAGCACAATAAAGGTCCTTGAGGACAACGAGGGGGCTATGGCGCT
GATTCAAAACCCTCTCAGCTCTGGCCGTAGCAAACACATAGACGTGCGCT
TCCATCTTATTCGGGAGTTGTTCAGATCGGGGGTCACCTCGGTCGAGCAC
GTCAGGACGGAGGAACAGCACGCCGACGTTCTCACCAAGGCGCTGAGCCG
GGACTTGTTCCGGTACTACCGGAAATCATTGATGAATTTGCCGGAGTAG
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