mRNA_P-littoralis_Contig10.116.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.116.1
Unique NamemRNA_P-littoralis_Contig10.116.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig10.116.1 vs. uniprot
Match: D7FQE0_ECTSI (Polynucleotide adenylyltransferase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE0_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 7.390e-14
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 MPRSAPAQHHFGAVISDREPEKKDEEASKELEKFLKAMGLYENEEGSRRRQV 156
            MPR AP Q HFGAVISDREPE KD  AS+ELEKFLKAMGLYEN EGS+RR+ 
Sbjct:    1 MPRLAPMQQHFGAVISDREPESKDLAASQELEKFLKAMGLYENAEGSKRRKA 52
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BLAST of mRNA_P-littoralis_Contig10.116.1 vs. uniprot
Match: A0A6H5KWQ1_9PHAE (Polynucleotide adenylyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.020e-13
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 MPRSAPAQHHFGAVISDREPEKKDEEASKELEKFLKAMGLYENEEGSRRRQVKIK 165
            MPR AP Q HFGAVISDREPE KD  ASKEL+KFLKAMGLYEN EG  RRQ  ++
Sbjct:    1 MPRLAPMQQHFGAVISDREPESKDLVASKELKKFLKAMGLYENAEGRTRRQAVLR 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQE0_ECTSI7.390e-1478.85Polynucleotide adenylyltransferase (Fragment) n=1 ... [more]
A0A6H5KWQ1_9PHAE3.020e-1374.55Polynucleotide adenylyltransferase (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:477357..482180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQE0
PFAMs2_5_RNA_ligase2,DUF504,Exo_endo_phos,NTP_transf_2,PAP_RNA-bind,PAP_central
Model size740
Max annot lvl2759|Eukaryota
KEGG koko:K14376
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004652,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0019219,GO:0019222,GO:0030145,GO:0030554,GO:0031123,GO:0031124,GO:0031323,GO:0031440,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0070566,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1903311
Exons2
Evalue3.18e-17
EggNOG OGsCOG5186@1|root,KOG2245@2759|Eukaryota
EC2.7.7.19
Descriptionpolynucleotide adenylyltransferase activity
Cds size174
COG categoryA
BRITEko00000,ko00001,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789332.3351865-CDS-P-littoralis_Contig10:477356..4775091680789332.3351865-CDS-P-littoralis_Contig10:477356..477509Pylaiella littoralis U1_48CDSP-littoralis_Contig10 477357..477509 +
1680789332.349455-CDS-P-littoralis_Contig10:481593..4816141680789332.349455-CDS-P-littoralis_Contig10:481593..481614Pylaiella littoralis U1_48CDSP-littoralis_Contig10 481594..481614 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789332.3601255-UTR-P-littoralis_Contig10:481614..4821801680789332.3601255-UTR-P-littoralis_Contig10:481614..482180Pylaiella littoralis U1_48UTRP-littoralis_Contig10 481615..482180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.116.1prot_P-littoralis_Contig10.116.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 477357..481614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.116.1

>prot_P-littoralis_Contig10.116.1 ID=prot_P-littoralis_Contig10.116.1|Name=mRNA_P-littoralis_Contig10.116.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MPRSAPAQHHFGAVISDREPEKKDEEASKELEKFLKAMGLYENEEGSRRR
QVKIKGN*
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mRNA from alignment at P-littoralis_Contig10:477357..482180+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.116.1 ID=mRNA_P-littoralis_Contig10.116.1|Name=mRNA_P-littoralis_Contig10.116.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4824bp|location=Sequence derived from alignment at P-littoralis_Contig10:477357..482180+ (Pylaiella littoralis U1_48)
ATGCCGCGATCGGCCCCGGCGCAGCATCACTTCGGGGCGGTCATATCGGA
CCGCGAGCCGGAGAAGAAGGATGAGGAAGCGTCAAAAGAGCTCGAGAAGT
TTCTGAAAGCGATGGGGCTGTACGAGAACGAAGAGGGCTCACGAAGGCGG
CAGGTGTGAGAGGCGTTTCGCGTGTGATGTTGGTGTTTTGGAATGTTATA
CGTATGGTGTGTGTGTTTTGTGTGTGTGCGGTTGTGTTTTGAGTTTGCAG
AGGAGTGAGACAGATTGTAGAGAAAGAAGAGGACAGAGAAGAAGAGAGCT
CGCGGTGCAGCCTACGATACAAGCACAAGCACACACAATCCTCTCGGAGT
GAAGTACCGACAGCCTTCGAGTTGTTCCGGATTTTTTCGCGAACGTGAGC
CCGAACGTTGGCGATTTTTGATCGGGGTATTTTATTTTATTTTCTGTGGA
GTTGCACCTTTCCCGATAAGTGCAGTATTACTCCGAGTCATCCTACAGAA
TCATATGTATGATTCTACTTCGTACTACCGGTAGTGCTCCGTAAACGGAG
TACCGGAGTGCACAGTCAGCAGTGCTGCTCTACCTGCTGCTGTACTCGTA
CCGGTATTACTTTTCTGAAGGATATTCCACCACAGCAGCAATACTGCTGT
CTGTAGTAGTAGCGTGGAGCACACGACGCACACACATCGCAATCATGTGC
TCTAGGTGGTGTGTCGTTGTCGTCCTACTGGGAGCGCGTGCGCTCGTCTA
TTTTGGTACGTACCGTAATTGTGCGGGTCATCGCACCCCTCGGGGTTTTG
GCACCCATCGGGGTTATGGCACCGGGGTGCGAAAAAAAACACGAGAAAAA
AATATTTAATTCTATTTTCGCACCCCCGTCGGGGTTATCGCACCCGGGTG
CGATAACCCCGACAAAAATTCAAAATTGAGTGCTGCGGTGACGCGCCACG
CCAACATCGTATGTATGTACCGTATGCAAACCTACCGTATGTTTCTTCCA
GGTAGTTGCGATCGGTGAAAGATCAATCCATCACGTATCATTATCGCGCC
GACGCACGCGTTCAAATACCGCAAGTCATCGTATTAAAACTAGGTACCGG
TACCTGCCAACCTGACAAACACCGTTCCGACAACGAGGAGCGATTGGTTC
AACACACACCGATACAAAACCGATATTGCACGGGACATTTACCTAAGGCA
AACAACACTCCGCACCATCAGTGTTCATCCTTGTGCCACACGCCGCACCC
AACTCGCTTTCGGCCCCGTAACCTTCCTTCCAGCCAGCAACAATTAGTGT
ACCTAGAACGATCCCCGCATCTATCTAGGTACTTTGTCCTCAACTACCGG
CTGATAGCTTCACAGCTCAATCTCTCCCTCTCCTTCCTCGCCCCCATCGC
CCAAGAACTCTATATCGCTATCATCTTCCAGCAGCTCCACATCGCTGTCG
CCACCCTCCGGTGTCTGAAGGTGTGCGTTACTACGCCGTTCATTTACAAC
AGAGCGGGTGGTAGCTGGGGGCCAGTGAGCCGCTGTGGTGGTATTCAGTA
TCGCACCCATCGGGGTTATCGCACCGGGGTGCATGTGTGTAGCACCCATG
CCCCAGTAGGGCCGGAATATTTGATTCAGCTCCGCACCCATCGGGGTCAT
CGCACCGGGGTGCGCAAAAACCACCAAGAACGAAACATTTAATTGTATTA
TCGCACCCCTGCCGGGGTTATCGCACCCATCGGGGTTATCGCACCGGGGT
GCGAAAAAAAAATCAAGAAAGAAACATTTAAAATCGCGATCGCACCCGGT
GCGATGACCCGCACAATTACGGTAATTGCAGTCGAAGCACTTCGTGCTCT
CACAGCAGTTAGTTCTTGTATTTGGATGGACTAAAATACACCGGTGTACA
CGTATCTTTTTTCATCCCATATACACCGGGACACGAGAAATACGAAGTAT
TGGACATTACAGAGAAGTACTCGAACGACATCCGTACAAGTATAACATCA
TACATATCATATCATGTGATTTTTTTTCCCCCTAGCACGATATGTGCCTG
GTTTTTGACCACGGGCTAGACTGCGGCGGTAGTGAACTAATGTGAGAATG
AACAACAACGATGCGATGCTTCGAATTGCTGGAATTATTGCATTATTCAG
CAACTCTCCGCACTTCGAAGCACTTAAATATTACTCCGGAGTAATACTTA
AAGTGTGTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCTGCACCCT
GCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAG
GTCTACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGA
GATTTTTTCTCGCGAGCAGGGGTCCGCGATCCCTACCCTCGTCGGCGAAG
CCGAATCTGCTTTTACTAACAGCATAGCCGCTTTCAAAGTAGCAAAGGAA
CACATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTTGTTAACG
AGGGGACCACTAGTCCACCGGGGCGACCGGTGTGTGTTTGTGAACGAAAA
TGGCAACCTTTTTCGTTTATACCAGCTATCACGCAGCAGGTATCATACGT
CCTGTAGCAGAGAAAGTGCGGACATGGCGGTAATTTCAATTTTGCCGTCT
GATGAAAGGGCGTCCAAATGAGACTCGAACTCACACTGCTGTGAGCAAAA
AACTGCTGTGCTTGCTTGTGACTCGTGACGCCTGCGTGGAATATCTGTAC
GTGACGCTATACTGTATATCTATGCGGAATGGTTGCATTGGTACTGATTG
TAGACTAGACTTCAAAAACTGACCAATCGTATGTATGCTGAGAGAAAGCG
AGCGAGTGTTAGAACCGCCTCCCTTTCTTTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCG
ACCCCTTCCTTCTCTCCAACTGTCTCGACGGGTCTGTAGACCTGAGCACC
TGGCACCACTGCCGCACGCCAGGCCGGCGGGAGTGCCATCTTGAAACGAC
GCTCTGTTGCAGTAACTTCTGCTGTCAAGATTTTTAGGGTACACTTCGTA
CAACTGCTATACTTGTACTGCTGTAGCGGAATTTCTATGTACTCCGTATG
ATACGAAGTACATCGCCGCCGTATTCTTCGGTCTTCGGGTCCACGCTGCT
TATGCCGTGCTTCACGCCGGTCTATTTCCCCCCCTTTTTTTTTCCTCTGC
GAATTCTCCTCCCTCGACCACCACACGCATGTGAACGCGACCAACGTGCG
CCATGCTAACGAAGGATTTTTCATGTATCATGCAGCAGCATTGCCACTGC
TGCTGTACTGGTGTAATCATAAGAGTTCCATTCTCGCCGTAGCGTCGATC
GAAAGGCCACGGAAGTGCAACAAGTAGCTCAACCTTGGCACATCAGATCA
TGCCTCTGGAGATTCTGTCATGACTCTCGCTTGGTGTATGTGTATTTTTC
CTGACGCGGGATAGGTAAGGTGTGTGTGTGTCATCCCATTGATTCTGGGC
ACCAGTCTACACCTTTGGTTATGATGTGGGTGCTTCAGCCGGGGTCACAC
TGGAGGAAGGTCACCCACGAGCTTTTTCACTTTTTTTTATTTCGTTTTGT
GCCCACACCTTTCCTGCTGCGGTACTTGCCCTTGGTTTTTGGTGCGAGTC
GGGTTCAGCGAACCCTTCCCTCTGTTTACTCACAAGTGAATCGCTGAGGT
ATTGCGACGCCACAACAGTACAGCCTTTATGTATTTGAAATGTTGGCGCC
GAGGAGCGCGCCTCAACGCTCGCGGTATGAGTTGTCGCCGGTGCAGATGT
TCATGATACTCTTTGCGGGGAGGCAACTTATAAACAGCTAGTCCTGCGAG
CGGCTGCTCCGGCACGTTGAAAATACGAATGAAGTTCCGCAGCCCACAAG
CACTCTATATCATATAATATCATAACGCGGCTTCATACACGTTTCTTTTT
CTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCCCGA
CAGCCGTAGGTGTCTATTTTGACAACTTGCGACATTTTGTTCGCTGATGC
CTTTTGGTTGACGTGCAGCTTTTTTTTCTCAATGCCGCAGTACGAAAGTT
TGTTGCTCCGAACTCCGTAGACATGTAGCCCCCACAAGCGCTCTCCCTcC
CCCCCCCCCCGCGTCCATTTACAAACGGTACCCTGAGGTCAAGATTAAAG
GAAATTAAAGAGTGGATGCATCCGTTCCCAGGGCTCAATGCGGTGCGCGC
TTGAAAACTGAAGGAAGACGTGGTAGGCGCAGACGGGAATGGCGGATCGA
TCTCCGACACGATTGATCCATGCGCAAGCAAGACAGCTCACACAAGCAGT
TGCATCGAGTCGAAAGCACTCTGTGTTAACCTTGTACCTGTAGAGAGGGA
TGGTGTGCGAACGCTGCTGCCGACATTTGTACAGTATGCAGCAGCAAGAG
TAGGCTGTCGTGAAAGATTACCACGCCGCGGCTTGGGTAAACCTGACAAT
CCGCTCCTTCTGATTGATGTGAACATTGTGTTTTCCTCACTTACACACAC
CTCCTTCGCATGCCGTCGTAAACGACAACATGTTCAACGAGAGAAGAGCG
AAACAGCCCTGACGTTTACCGGTGTGCGTGCTGCTCAGCTGCGATCCTCT
CATGCTGGGGAGAAGAACATTGAATTGCCGCAGGGAAGAAAAAATGAGCA
GCACGACGACCCCAGACTCATGAAACACAGCAAGCGAGCAGCAGCAGGCA
CACGCACACCCGAATGGAGAGGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:477357..482180+

>mRNA_P-littoralis_Contig10.116.1 ID=mRNA_P-littoralis_Contig10.116.1|Name=mRNA_P-littoralis_Contig10.116.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig10:477357..482180+ (Pylaiella littoralis U1_48)
ATGCCGCGATCGGCCCCGGCGCAGCATCACTTCGGGGCGGTCATATCGGA
CCGCGAGCCGGAGAAGAAGGATGAGGAAGCGTCAAAAGAGCTCGAGAAGT
TTCTGAAAGCGATGGGGCTGTACGAGAACGAAGAGGGCTCACGAAGGCGG
CAGGTCAAGATTAAAGGAAATTAA
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