mRNA_P-littoralis_Contig837.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig837.22.1
Unique NamemRNA_P-littoralis_Contig837.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig837.22.1 vs. uniprot
Match: A0A6H5JLH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH3_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 3.990e-52
Identity = 183/527 (34.72%), Postives = 230/527 (43.64%), Query Frame = 2 
Query:  167 VLGSPAFFVAVTGLLAQ--LPP---TPYPPRRRAP--SIVR--------------------------------------NLAAGGGNGGNRYGGFDASAWKDIDFSIPEAAAAAPPMSSKLASSNESFAVLQQPRDDTQERERGAEAIDVDVEKLPTFVFFGRGSDGQHWREDVVGGGNARVCAAKLQEKMNAFSSRG------GTLNPDDSPRLLRSGREGKGGGGVADI-VDGRAL-RSTCLGKNVAEAVVRSGKSSSSDGAYVDVSTSGANVSNCNVVEVSSKDHLLHILRTQQKGQGPVVVMYHAPWCRKCTYLTPLFRRLAAAQMPVTDGTPAAAGGDAFCGGSILASSEPTFYRADVSNPSWERR--------SPAAAFAE------------------------------------------------------------EKDEEEGAETEMSHSGSPDLESCDVCGRSGFVPCGEXXXXXXXXXXXXXXXXXXXXXXXACVGYKRQXXXXXGGKCYMCD 1384
            VLGS  F VAV+GLL    +PP   +P+ P   AP  S+ R                                      N AA G   G+ +G FDA AWK++  S P   A    ++      + + A+     DD    E   E I V V+KLPTFVFF R  +G+H RE+V GG +AR CA KL+E++ + SS G      G+L+ +DSP       EG  GGGVA    DG A+      G N  +    +G    + G    V  +G   S  N+VE+S K  LL +L  + +GQGPVVVMYHAPWCRKC YL P+FRRLAAAQ      T A  GG +   GS   S  P F R DVS+PSW RR        +PA   +E                                                               E + AETE+ H+GS  +E+CDVCG SGFVPCGE                       +CVGYKR      GGKCYMCD
Sbjct:    7 VLGSATFLVAVSGLLDPPLVPPIGLSPFHPSAPAPPPSLFRSDKRRGSFCGGPLASTARMRKRCLQAGNESPGTGDEGVNAAAAGRRHGSGHGMFDADAWKNMPSSPPLVTAPPTSLNPSAVQLSANGAL-----DDEGGVEGREEPISVYVDKLPTFVFFVR-DNGRHRREEVTGGRDARTCATKLRERLASISSPGSTWTNSGSLDDNDSPLRPSGAGEGGVGGGVARTRSDGAAVVGGAAEGPNRLDNETDTGMGRGNGGMGAIVDGTG---SPTNIVEISDKRELLRVLGARGEGQGPVVVMYHAPWCRKCAYLAPVFRRLAAAQATSVGVTKA--GGSSSDRGS---SGGPLFCRVDVSDPSWGRRRAVRGSSVAPATVASEGTAAXXXXXXXXXXXXXXXXXVRRARNKASIAAGASSQARGLGVGDRAAGLMAADATATPANAEGKIAETELLHAGSQAVENCDVCGGSGFVPCGECGGLGAVSRASPDGKHTMAVTCSSCVGYKRLRCPSCGGKCYMCD 519
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BLAST of mRNA_P-littoralis_Contig837.22.1 vs. uniprot
Match: D7FW10_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW10_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 3.830e-46
Identity = 186/446 (41.70%), Postives = 229/446 (51.35%), Query Frame = 2 
Query:  269 NLAAGGGNGGNRYGGFDASAWKDIDFSIPEAAAAAPPMSSKLA----SSNESFAVLQQPRDDTQERERGAEAIDVDVEKLPTFVFFGRGSDGQHWREDVVGGGNARVCAAKLQEKMNAFSSRG------GTLNPDDSP-RLLRSGREGKGGGGVADIVDGRAL-RSTCLGKNVAEAVVRSGKSSSSDGAYVDVSTSGANVSNCNVVEVSSKDHLLHILRTQQKGQGPVVVMYHAPWCRKCTYLTPLFRRLAAAQMP---VTDGTPAAAGGDAFCGGSILASSEPTFYRADVSNPSWERR---------------------------------SPAAAFAEEKDEEEG--------------------------AETEMSHSGSPDLESCDVCGRSGFVPCGEXXXXXXXXXXXXXXXXXXXXXXXACVGYKRQXXXXXGGKCYMCD 1384
            N AAGG   G+ +  FDA AWK++  S P   A  PP S   +    SSN++         D +  E   E  +VDVEKLPTFVFF R   G+H RE+V+GG +AR CA +L E++ + SS G      G+L+ +DSP R   +G  G GGG      DG A+      G +  +    +G    S     +V  +G   +  N+VE+S K  LL +L    +GQGPVVVMYHAPWCRKC YLTP+FRRLAAAQ P   V +G     GG +   GS   S  P F R DVS+PSW RR                                 + AA  A    + +G                          AETE+ H+GS  +E+CDVCG SGFVP   XXXXXXXXXXXXXXXXXXXXXXX        XXXXXGGKCYMCD
Sbjct:   86 NAAAGGRRHGSGHSMFDADAWKNMPSSPPPVTA--PPTSLNPSAVQLSSNDAL--------DGEGEEEREEPTNVDVEKLPTFVFFVR-DKGRHRREEVIGGRDARTCATELSERLASISSPGSTWTNSGSLDDNDSPLRPSGAGEGGVGGGAARTSSDGAAVVGGAAEGPDRLDYETDTGMGRGSGDMVANVDGTG---NPTNIVEISDKRDLLRVLGALGEGQGPVVVMYHAPWCRKCAYLTPVFRRLAAAQAPSAGVREG-----GGSSIERGS---SEGPLFCRVDVSHPSWGRRRAVRGASVAPSTVASAGTAAXXXXXXXXXXXXPNTAAIAAGASSQAQGLGFGDRAAGWVAADATTATAEAEGTIAETELLHAGSQAVENCDVCGGSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 509
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig837.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLH3_9PHAE3.990e-5234.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW10_ECTSI3.830e-4641.70Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig837contigP-littoralis_Contig837:95057..98099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog57918.XP_004303341.1
PFAMsThioredoxin
Model size2626
Max annot lvl35493|Streptophyta
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004791,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019725,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0045454,GO:0047134,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748
Exons2
Evalue0.000672
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota,37TYB@33090|Viridiplantae,3GIET@35493|Streptophyta,4JNUF@91835|fabids
Ec32 ortholog descriptionThioredoxin-like fold and cysteine-rich domain protein
Ec32 orthologEc-01_002920.1
DescriptionThioredoxin-like 3-1
Cds size1236
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791701.333183-UTR-P-littoralis_Contig837:95056..962951680791701.333183-UTR-P-littoralis_Contig837:95056..96295Pylaiella littoralis U1_48UTRP-littoralis_Contig837 95057..96295 -
1680791701.3615801-UTR-P-littoralis_Contig837:97531..975761680791701.3615801-UTR-P-littoralis_Contig837:97531..97576Pylaiella littoralis U1_48UTRP-littoralis_Contig837 97532..97576 -
1680791701.3770928-UTR-P-littoralis_Contig837:97993..980991680791701.3770928-UTR-P-littoralis_Contig837:97993..98099Pylaiella littoralis U1_48UTRP-littoralis_Contig837 97994..98099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791701.3496938-CDS-P-littoralis_Contig837:96295..975311680791701.3496938-CDS-P-littoralis_Contig837:96295..97531Pylaiella littoralis U1_48CDSP-littoralis_Contig837 96296..97531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig837.22.1prot_P-littoralis_Contig837.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig837 96296..97531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig837.22.1

>prot_P-littoralis_Contig837.22.1 ID=prot_P-littoralis_Contig837.22.1|Name=mRNA_P-littoralis_Contig837.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=412bp
MVRNAVLGSPAFFVAVTGLLAQLPPTPYPPRRRAPSIVRNLAAGGGNGGN
RYGGFDASAWKDIDFSIPEAAAAAPPMSSKLASSNESFAVLQQPRDDTQE
RERGAEAIDVDVEKLPTFVFFGRGSDGQHWREDVVGGGNARVCAAKLQEK
MNAFSSRGGTLNPDDSPRLLRSGREGKGGGGVADIVDGRALRSTCLGKNV
AEAVVRSGKSSSSDGAYVDVSTSGANVSNCNVVEVSSKDHLLHILRTQQK
GQGPVVVMYHAPWCRKCTYLTPLFRRLAAAQMPVTDGTPAAAGGDAFCGG
SILASSEPTFYRADVSNPSWERRSPAAAFAEEKDEEEGAETEMSHSGSPD
LESCDVCGRSGFVPCGECEGKGAVARSSPDGKHTLAVTCPACVGYKRQRC
PSCGGKCYMCD*
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mRNA from alignment at P-littoralis_Contig837:95057..98099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig837.22.1 ID=mRNA_P-littoralis_Contig837.22.1|Name=mRNA_P-littoralis_Contig837.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3043bp|location=Sequence derived from alignment at P-littoralis_Contig837:95057..98099- (Pylaiella littoralis U1_48)
GTCGGAGCGGTCGCTGCCCTCAGCAGGAGGGGTGGAGGTGCCCATCATTG
CTTCGCTCTTCACTTTTCTTTCCCATTTCTTGCAGGCCCGGCTTCTGTGG
CATCAGGCAAGGAAACATATGCTCTGAACAAAAGTGCAATGGTTTATCTC
TGTATCCTTATGTGCCTTCGCCAAATATTTCCGTCTCACGAGAGCACAGT
TAGCACTGCGTTGACACTGCATTCGCGAGTACAGCATCGATATAGTATAC
GTTTGTTTGCAGCAGCAATGGAACAGGATGAAACATCACCTGCGTAGTGT
ACTGTACAGCAGTAACGATGTCACTTGTGCCGCTTGGCGATGCATGCAGC
TTACCATAGTGCGGTCATCAGGGTTCGGCAGAAAAAGCAGTTTGTTCCAT
CAAACGAACAACACAACTCACTTGTAAACCGACCGCTATGCATACCCCAG
GGTAAAGTCTACACCTGAATACCTGGTGCAATCCAACCTCCATCCGTCGT
GCCCTTTCCTGCTATCGGCGCAGCTCAACAGGTAATGCATTAACGAAGCC
AAGCTGTGCACGCACAAGATGGTACGTAACGCCGTTCTGGGCTCCCCCGC
CTTCTTCGTTGCGGTGACCGGCCTGCTTGCCCAGCTGCCGCCGACGCCGT
ACCCGCCACGCCGACGCGCACCTTCCATTGTGAGAAACCTCGCTGCGGGG
GGGGGCAACGGAGGCAATAGATACGGCGGGTTCGATGCCAGCGCATGGAA
AGACATCGATTTTTCTATTCCAGAGGCGGCGGCGGCGGCACCACCTATGA
GCTCAAAACTCGCGAGCTCAAATGAGAGTTTTGCTGTCCTTCAACAACCC
CGAGATGATACACAAGAACGGGAACGGGGAGCAGAGGCTATTGACGTCGA
TGTAGAAAAATTGCCGACCTTTGTGTTCTTTGGGCGAGGAAGTGACGGGC
AGCATTGGCGGGAGGATGTTGTTGGTGGAGGGAACGCACGGGTCTGTGCG
GCCAAGCTGCAAGAAAAAATGAACGCATTTTCATCGCGGGGAGGAACTTT
GAACCCTGACGACAGCCCGCGCTTACTACGATCAGGAAGAGAAGGAAAAG
GAGGAGGCGGAGTAGCCGATATTGTTGACGGGAGGGCTTTACGAAGTACT
TGCCTTGGAAAAAACGTGGCTGAGGCCGTCGTTCGCAGCGGTAAAAGTAG
TAGTTCCGATGGCGCGTACGTAGACGTGAGCACCAGCGGCGCCAACGTGA
GCAACTGCAACGTCGTGGAGGTTTCCTCCAAGGACCACTTGCTTCACATT
CTTCGCACCCAGCAAAAAGGGCAGGGCCCCGTCGTGGTGATGTACCACGC
GCCTTGGTGTCGCAAATGCACCTACCTCACTCCGTTGTTTCGCCGACTCG
CTGCTGCCCAAATGCCGGTGACAGACGGCACCCCAGCTGCAGCGGGCGGC
GATGCCTTCTGCGGTGGCAGCATTCTGGCATCATCAGAACCGACGTTCTA
TCGAGCAGATGTTTCAAACCCATCATGGGAGCGAAGGAGTCCTGCTGCTG
CTTTCGCGGAGGAGAAGGACGAGGAGGAGGGGGCGGAAACAGAGATGTCG
CACTCCGGGTCACCTGACCTCGAGAGTTGCGATGTGTGCGGGAGGTCCGG
GTTCGTGCCGTGCGGAGAGTGCGAGGGGAAGGGCGCTGTGGCTCGATCAA
GCCCCGATGGGAAGCACACCTTGGCGGTCACGTGTCCCGCGTGCGTCGGT
TACAAGCGCCAGCGCTGCCCGTCGTGCGGCGGGAAATGTTACATGTGTGA
CTGACTGAGAGGTATCACAATGGTTGGAATGTAACAAAGTGAGCAGCGAA
ACGTTGGTGGATACTGTACACGTGTCTCTGTCCGTGTTTGTTTTTTCTCA
GTCCCGGGCCCTAGTACATGTGCAGCAGGGCTGTTCACATTTCTGAGACT
GTTGCGAAAATAGACATTTCGGGCGCAGGCCTTGGTGTGAGTACTTTCAG
GAGGTTCTTTGTGTCGTTTTCACTGTGATGCCATGGTATTGTGGGGCTAA
CACTAGATTCAGTACAAAGGACGGGTACATCCTGTTTATGATTCAGTAGA
GGCATCATGATAGACTTGAAGCAGGTACTGCCGCGTATGTTAAGGAATGA
TACACGGGGCCCTGAGGCTGCTCCTGTATAGTATGGAATGATACACGGGG
CTCCAACGCATTCAGAGCCCTGGCTTTCACTCGCGTGGGGTACGAGCAGG
GCGAAGGAAAGAGACAGCAGCAACTAAAGGACAGCTCAGCCTCCGCACGC
AGTGGTACAGTATCATAGCAGTGAACTATTTCCATGTGTATCAGTCATGC
CAAGCATATTTTACCTTGGATCGTGGTGAAGTCATTTCCAGGGTTGCTTA
CGGGGCGTTGCTTTGCTACGGTAGATGCAAAAGTAGGGCTAAAAATCGTA
GCCGACTCACCTTATTAATTGGTCCGATTCAAGCCTCAATTGTAATCGGA
AAATTTAACTGATGCCCACCGATGTGTTTTTTGTACCTAATGGCGTTCGT
CTGCTGTATTTAGAGAGCAGTTGTATTCCCGGCCTGCAGATAGGCTCTTC
GGGTGTACATCAGACCTTGTGCACATTGCAAGCAGAGCACAGGAAAGTTT
GGAAGCGTGGGGGGCGCGAATGCATCCCACGCACACACTCACTTAGCAGG
GGGTCAGGTCTCACCGTTTTGTAATTGGAAGATGGCAATGGTATAGCATC
GCCTGCTTTGCTTTGTGTTTTCTTTTTATCCTTTCGCTTCCGTTTTTTGG
TGTTGAACTTTGAGGTGGGTACATGAGAAGTACCAAAGCACCTTAGCAAA
GTTGTTTCCTGCCGGTGGTGACGCGCGTGCGTGGACATTGATGTTACCCG
CTCTTGATTTTGCTTTGGATGCTGTAACCGAAAAGAGATGTCACACTTCG
CACGGCTGTGTTCCCAGCATTCATGCACACGGGTTGAAATACTTTATTTC
ATTCTATTCATTTAGTTGTTAGTTCATACGACGTATATTGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig837:95057..98099-

>mRNA_P-littoralis_Contig837.22.1 ID=mRNA_P-littoralis_Contig837.22.1|Name=mRNA_P-littoralis_Contig837.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1236bp|location=Sequence derived from alignment at P-littoralis_Contig837:95057..98099- (Pylaiella littoralis U1_48)
ATGGTACGTAACGCCGTTCTGGGCTCCCCCGCCTTCTTCGTTGCGGTGAC
CGGCCTGCTTGCCCAGCTGCCGCCGACGCCGTACCCGCCACGCCGACGCG
CACCTTCCATTGTGAGAAACCTCGCTGCGGGGGGGGGCAACGGAGGCAAT
AGATACGGCGGGTTCGATGCCAGCGCATGGAAAGACATCGATTTTTCTAT
TCCAGAGGCGGCGGCGGCGGCACCACCTATGAGCTCAAAACTCGCGAGCT
CAAATGAGAGTTTTGCTGTCCTTCAACAACCCCGAGATGATACACAAGAA
CGGGAACGGGGAGCAGAGGCTATTGACGTCGATGTAGAAAAATTGCCGAC
CTTTGTGTTCTTTGGGCGAGGAAGTGACGGGCAGCATTGGCGGGAGGATG
TTGTTGGTGGAGGGAACGCACGGGTCTGTGCGGCCAAGCTGCAAGAAAAA
ATGAACGCATTTTCATCGCGGGGAGGAACTTTGAACCCTGACGACAGCCC
GCGCTTACTACGATCAGGAAGAGAAGGAAAAGGAGGAGGCGGAGTAGCCG
ATATTGTTGACGGGAGGGCTTTACGAAGTACTTGCCTTGGAAAAAACGTG
GCTGAGGCCGTCGTTCGCAGCGGTAAAAGTAGTAGTTCCGATGGCGCGTA
CGTAGACGTGAGCACCAGCGGCGCCAACGTGAGCAACTGCAACGTCGTGG
AGGTTTCCTCCAAGGACCACTTGCTTCACATTCTTCGCACCCAGCAAAAA
GGGCAGGGCCCCGTCGTGGTGATGTACCACGCGCCTTGGTGTCGCAAATG
CACCTACCTCACTCCGTTGTTTCGCCGACTCGCTGCTGCCCAAATGCCGG
TGACAGACGGCACCCCAGCTGCAGCGGGCGGCGATGCCTTCTGCGGTGGC
AGCATTCTGGCATCATCAGAACCGACGTTCTATCGAGCAGATGTTTCAAA
CCCATCATGGGAGCGAAGGAGTCCTGCTGCTGCTTTCGCGGAGGAGAAGG
ACGAGGAGGAGGGGGCGGAAACAGAGATGTCGCACTCCGGGTCACCTGAC
CTCGAGAGTTGCGATGTGTGCGGGAGGTCCGGGTTCGTGCCGTGCGGAGA
GTGCGAGGGGAAGGGCGCTGTGGCTCGATCAAGCCCCGATGGGAAGCACA
CCTTGGCGGTCACGTGTCCCGCGTGCGTCGGTTACAAGCGCCAGCGCTGC
CCGTCGTGCGGCGGGAAATGTTACATGTGTGACTGA
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