mRNA_P-littoralis_Contig12.200.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.200.1
Unique NamemRNA_P-littoralis_Contig12.200.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig12.200.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.900e-40
Identity = 75/113 (66.37%), Postives = 85/113 (75.22%), Query Frame = 2 
Query:    2 PMKDLAVRLPLLVRLDGSLKEPPLCGTKVNPDHPGLTKQKGRFGLDRAGNLIMGYHKTDKPNMCKRGGTIPVTTAKPPYAVPTFAIPPLCAGKIVSNKTYNDRERKLAEVNKE 340
            P +DLA +L LLV+ DGSLK+ PLC T+VNPDHPGLTK +  FGLDR G LIMG H     N C  GGTIPVTTA PPY VP FAI PL AGKIVSNKT+N RER  A++N+E
Sbjct:  424 PTRDLAAKLRLLVQPDGSLKDAPLCDTEVNPDHPGLTKGRSTFGLDREGALIMGVHNGQSLNRCVGGGTIPVTTAAPPYRVPHFAIAPLLAGKIVSNKTHNKRERTRAKLNEE 536
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8P5_ECTSI1.900e-4066.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:807268..807737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size470
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789511.9758499-UTR-P-littoralis_Contig12:807267..8072711680789511.9758499-UTR-P-littoralis_Contig12:807267..807271Pylaiella littoralis U1_48UTRP-littoralis_Contig12 807268..807271 +
1680789511.994688-UTR-P-littoralis_Contig12:807610..8077371680789511.994688-UTR-P-littoralis_Contig12:807610..807737Pylaiella littoralis U1_48UTRP-littoralis_Contig12 807611..807737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789511.984348-CDS-P-littoralis_Contig12:807271..8076101680789511.984348-CDS-P-littoralis_Contig12:807271..807610Pylaiella littoralis U1_48CDSP-littoralis_Contig12 807272..807610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.200.1prot_P-littoralis_Contig12.200.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 807272..807610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.200.1

>prot_P-littoralis_Contig12.200.1 ID=prot_P-littoralis_Contig12.200.1|Name=mRNA_P-littoralis_Contig12.200.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MKDLAVRLPLLVRLDGSLKEPPLCGTKVNPDHPGLTKQKGRFGLDRAGNL
IMGYHKTDKPNMCKRGGTIPVTTAKPPYAVPTFAIPPLCAGKIVSNKTYN
DRERKLAEVNKE*
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mRNA from alignment at P-littoralis_Contig12:807268..807737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.200.1 ID=mRNA_P-littoralis_Contig12.200.1|Name=mRNA_P-littoralis_Contig12.200.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=470bp|location=Sequence derived from alignment at P-littoralis_Contig12:807268..807737+ (Pylaiella littoralis U1_48)
CCCAATGAAAGATCTCGCCGTGCGACTTCCACTCCTGGTGCGGTTGGATG
GGAGCCTGAAGGAACCCCCGCTCTGTGGCACAAAGGTCAACCCCGATCAC
CCTGGCCTCACCAAGCAGAAAGGGCGATTCGGCCTCGACCGGGCGGGTAA
CCTCATTATGGGATACCATAAGACCGACAAGCCGAACATGTGCAAGAGAG
GGGGAACCATCCCTGTCACCACCGCCAAGCCGCCCTACGCGGTACCAACC
TTCGCGATCCCTCCCCTGTGCGCGGGCAAGATTGTGTCTAACAAGACCTA
CAATGACAGGGAGAGGAAACTCGCGGAGGTGAACAAGGAGTAAACGGTGG
CCGTTTCCCCGAGTCACGCACATCGTGTGGCCCCGGGAACCACCTTCTAC
CCTCGTCCTCGTGGTAGTCGTGTCCGCGCTTCTTCCGCATTTCGACTGTG
TAAAATGTAGCATGTGTTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:807268..807737+

>mRNA_P-littoralis_Contig12.200.1 ID=mRNA_P-littoralis_Contig12.200.1|Name=mRNA_P-littoralis_Contig12.200.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig12:807268..807737+ (Pylaiella littoralis U1_48)
ATGAAAGATCTCGCCGTGCGACTTCCACTCCTGGTGCGGTTGGATGGGAG
CCTGAAGGAACCCCCGCTCTGTGGCACAAAGGTCAACCCCGATCACCCTG
GCCTCACCAAGCAGAAAGGGCGATTCGGCCTCGACCGGGCGGGTAACCTC
ATTATGGGATACCATAAGACCGACAAGCCGAACATGTGCAAGAGAGGGGG
AACCATCCCTGTCACCACCGCCAAGCCGCCCTACGCGGTACCAACCTTCG
CGATCCCTCCCCTGTGCGCGGGCAAGATTGTGTCTAACAAGACCTACAAT
GACAGGGAGAGGAAACTCGCGGAGGTGAACAAGGAGTAA
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