mRNA_P-littoralis_Contig835.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig835.6.1
Unique NamemRNA_P-littoralis_Contig835.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig835.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig835contigP-littoralis_Contig835:20394..20982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size589
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791699.0279849-UTR-P-littoralis_Contig835:20393..206161680791699.0279849-UTR-P-littoralis_Contig835:20393..20616Pylaiella littoralis U1_48UTRP-littoralis_Contig835 20394..20616 -
1680791699.0575204-UTR-P-littoralis_Contig835:20931..209821680791699.0575204-UTR-P-littoralis_Contig835:20931..20982Pylaiella littoralis U1_48UTRP-littoralis_Contig835 20932..20982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791699.038223-CDS-P-littoralis_Contig835:20616..209311680791699.038223-CDS-P-littoralis_Contig835:20616..20931Pylaiella littoralis U1_48CDSP-littoralis_Contig835 20617..20931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig835.6.1prot_P-littoralis_Contig835.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig835 20617..20931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig835.6.1

>prot_P-littoralis_Contig835.6.1 ID=prot_P-littoralis_Contig835.6.1|Name=mRNA_P-littoralis_Contig835.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MQSLGKLDIAWSNYGEYPACTIIDLLDNLDYCIDYAPYKRHQGLIRPVTL
LIAALFYGARKEEVPLKSRIHTKPYVRHRNTPKQHAAHCNKGGTRREKRP
VMVS*
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mRNA from alignment at P-littoralis_Contig835:20394..20982-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig835.6.1 ID=mRNA_P-littoralis_Contig835.6.1|Name=mRNA_P-littoralis_Contig835.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=589bp|location=Sequence derived from alignment at P-littoralis_Contig835:20394..20982- (Pylaiella littoralis U1_48)
CTTTCATGGACAAGAATTGGTCTTGGGTGATGCGGAATCAAATAGGGGTA
GATGCAAAGCTTGGGAAAATTAGATATTGCGTGGAGCAACTACGGTGAGT
ACCCAGCCTGCACCATCATAGATCTTCTGGACAACCTCGATTATTGCATA
GATTATGCGCCTTACAAACGTCATCAAGGTTTGATTCGCCCGGTCACTTT
ATTGATCGCTGCGCTTTTTTACGGAGCACGGAAGGAGGAAGTGCCTTTGA
AGTCGAGGATTCACACGAAACCGTACGTAAGACACCGAAATACCCCAAAG
CAGCATGCGGCGCATTGCAACAAAGGAGGGACAAGGAGAGAGAAAAGACC
CGTGATGGTCTCGTAAAGGGCAGCGTTATCAACAGCGGTGCATTCATGCT
CGGTGCGCAGTCAATCAACCCTTGCCTGTTGAGTGTGCGCCTGAGCTCTC
TCTAGCAGCCTCCGACACGGCGCCATGAACCCGAACATTTCTTGGCCAGA
GGAACAACCCGGCCTGCCTCTGTTCACGTCATCATAGCGAATTTTCCTGG
AATCTCCATCGCTGACCGTCTGACCGTCCGGAGGCCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig835:20394..20982-

>mRNA_P-littoralis_Contig835.6.1 ID=mRNA_P-littoralis_Contig835.6.1|Name=mRNA_P-littoralis_Contig835.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig835:20394..20982- (Pylaiella littoralis U1_48)
ATGCAAAGCTTGGGAAAATTAGATATTGCGTGGAGCAACTACGGTGAGTA
CCCAGCCTGCACCATCATAGATCTTCTGGACAACCTCGATTATTGCATAG
ATTATGCGCCTTACAAACGTCATCAAGGTTTGATTCGCCCGGTCACTTTA
TTGATCGCTGCGCTTTTTTACGGAGCACGGAAGGAGGAAGTGCCTTTGAA
GTCGAGGATTCACACGAAACCGTACGTAAGACACCGAAATACCCCAAAGC
AGCATGCGGCGCATTGCAACAAAGGAGGGACAAGGAGAGAGAAAAGACCC
GTGATGGTCTCGTAA
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