mRNA_P-littoralis_Contig835.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig835.25.1
Unique NamemRNA_P-littoralis_Contig835.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig835.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig835contigP-littoralis_Contig835:99350..100336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size181
Hectar predicted targeting categoryother localisation
Exons3
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791698.9194677-CDS-P-littoralis_Contig835:99351..993741680791698.9194677-CDS-P-littoralis_Contig835:99351..99374Pylaiella littoralis U1_48CDSP-littoralis_Contig835 99352..99374 -
1680791698.9341266-CDS-P-littoralis_Contig835:99633..997081680791698.9341266-CDS-P-littoralis_Contig835:99633..99708Pylaiella littoralis U1_48CDSP-littoralis_Contig835 99634..99708 -
1680791698.9485536-CDS-P-littoralis_Contig835:100257..1003361680791698.9485536-CDS-P-littoralis_Contig835:100257..100336Pylaiella littoralis U1_48CDSP-littoralis_Contig835 100258..100336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig835.25.1prot_P-littoralis_Contig835.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig835 99352..100336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig835.25.1

>prot_P-littoralis_Contig835.25.1 ID=prot_P-littoralis_Contig835.25.1|Name=mRNA_P-littoralis_Contig835.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
EDSGACPVTDGGPEEGCWPLHRDDDGGGKDVGLPCVWIRCWVSTNALKDE
AAIVKPHFL
back to top

mRNA from alignment at P-littoralis_Contig835:99350..100336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig835.25.1 ID=mRNA_P-littoralis_Contig835.25.1|Name=mRNA_P-littoralis_Contig835.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig835:99350..100336- (Pylaiella littoralis U1_48)
GAAGATTCTGGTGCCTGCCCAGTTACAGACGGAGGTCCAGAGGAAGGCTG
CTGGCCGCTTCACCGCGATGACGATGGAGGTGTGTTGTGTTGTGGTGTGC
TGTGTTGGCTGTTTGATCTTGTCATCTGGTATCCCTGCTGCTTGTCATGT
GTGCGTGTGCCGTGCTGTGCTCGTCACCCGCGGCAGGGCAATGAACTGCC
TTACTCGATTGTTGTGTAGATTGCACAGCGTCACGAAGGGCTATAGCGAG
GATGGATTTTATTCTACATACTTCGAAGTATGTGTATAGATATCTTGTTG
TCCAGCAGGACGTGTTTGATAAATCTCTCCGCACCAACACACATGAACAT
GATGATGCAATACACCTGTTTAGTCTGTAGCACAGCAGACAGCTGTATTC
ATATTCTACACAGCAGTATACTAGTGCTGTACCAGCACCCACCTGTGTAT
GGCCCGTACAGCAGTACCTCTCTACACAGCAGTATACCAGTTATCTACTT
ATATTTGTCGAAAGAAACACGCACGTGCAAATCATCGTCCTTGGTGATGT
ACGAGTACTCAGCCAAATTCGAAGAAAGGAAGAAATACTGAACGAGCGTC
AATCTGTATGCTGAATGAATGTTGGCAGGTGGGAAGGATGTTGGTCTGCC
GTGTGTTTGGATCCGGTGCTGGGTGTCTACAAACGCGTTGAAGGACGAAG
CAGGTGAGATGGATGGGTTCAAACCGTTGTTGCCTGATGCTCCGTGCCGG
GCCGGATTGTGGGAATATCGTGCCCTGTTGTCGAATTCTTGCGGCCACGA
TCGATGTTCAGGGAGTCTTTCCCTCGTCAGATATGTCGGTATTTTCGTTA
GGTTGCTCAGTTGACTTACTTTATATGCCTGGTACGTGTTTTTCAGCCGT
TTATGCGGAGCACTTTTGGATCAACATTGCTGTTACTTTGTCCTGCCCCC
CGCCGCGAACAGCAATCGTGAAGCCTCATTTTCTCCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig835:99350..100336-

>mRNA_P-littoralis_Contig835.25.1 ID=mRNA_P-littoralis_Contig835.25.1|Name=mRNA_P-littoralis_Contig835.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig835:99350..100336- (Pylaiella littoralis U1_48)
GAAGATTCTGGTGCCTGCCCAGTTACAGACGGAGGTCCAGAGGAAGGCTG
CTGGCCGCTTCACCGCGATGACGATGGAGGTGGGAAGGATGTTGGTCTGC
CGTGTGTTTGGATCCGGTGCTGGGTGTCTACAAACGCGTTGAAGGACGAA
GCAGCAATCGTGAAGCCTCATTTTCTC
back to top